mRNA_A-nodosum_M_contig1081.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1081.3.1
Unique NamemRNA_A-nodosum_M_contig1081.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: UPI001C988E4D (hypothetical protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001C988E4D)

HSP 1 Score: 140 bits (353), Expect = 1.600e-37
Identity = 68/156 (43.59%), Postives = 102/156 (65.38%), Query Frame = 1
Query:   28 PDEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDS--PNQVGRLQKAMYGL 489
            PD+PTT   A +  +  +W+ A+K EMD   + GVW +VD P G   +G K ++KRK+G DG+VETYK R VAK + Q +G+ Y+E+ SP     SIR+ LA+ A  D+E  Q+DV+ AFL   + E+LY+E P G+  S   ++V +L++++YGL
Sbjct:   86 PDDPTTYEGAMLDIDSSRWQEAMKSEMDSMYSNGVWTLVDPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEETFSPVAMLKSIRILLAIAAYYDYEICQMDVKTAFLNGNIEEDLYMEQPKGFISSGEDHKVCKLKRSIYGL 241          
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: A0A2I0J8X0_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J8X0_PUNGR)

HSP 1 Score: 138 bits (347), Expect = 9.790e-37
Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRD--SPNQVGRLQKAMYGL 489
            DEPTT  EA + P+  +W  A++ EM+      VW +VD P G  ++G K VFK+K   DG V T+K R VAK FRQV G+ Y E+ SP     SIR+ LA+ A  D+E WQ+DV+ AFL   + E++Y+  P+G+ D  S  +V +LQ+++YGL
Sbjct:   70 DEPTTYAEAVIGPDSEKWLVAMRSEMESMYTNQVWTLVDPPEGAKLIGYKWVFKKKTDMDGNVITFKRRLVAKGFRQVHGVDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPHSAEKVCKLQRSIYGL 224          
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: A0A2I0IJP3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IJP3_PUNGR)

HSP 1 Score: 137 bits (345), Expect = 8.120e-36
Identity = 66/154 (42.86%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDSP-NQVGRLQKAMYGL 489
            D+PTT  EA    +  +W  A+K EMD      VW +VD P G   +G K VFKRK+G DG+VETYK R VAK +RQ +G+ Y+E+ SP     S+R+ LA+ A  D+E WQ+DV+ AFL   + E+++++ P G+     ++V +L++++YGL
Sbjct:   74 DDPTTYEEAISDIDSSKWLEAMKSEMDSMSKNQVWDLVDPPEGIVPIGNKWVFKRKIGADGKVETYKARLVAKGYRQKQGVDYEETFSPVAMLKSLRIMLAIAAHYDYEVWQMDVKTAFLNVSIEEDIFMDQPKGFESKDKSKVCKLKRSIYGL 227          
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: UPI000D464853 (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI000D464853)

HSP 1 Score: 134 bits (337), Expect = 1.040e-35
Identity = 67/154 (43.51%), Postives = 97/154 (62.99%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDSP-NQVGRLQKAMYGL 489
            D+P T  EA    +  +W  A+K E+D      VW +VD P G   +G K VFK+K+G DG+VETYK R VAK FRQ +GI Y+E+ SP     SIR+ LA+ A  D+E WQ+DV+ AFL   + E +++E P G+     ++V +L++++YGL
Sbjct:   58 DDPLTYEEAISDIDSSKWIDAMKSEIDSMYKNQVWDLVDPPEGIVPIGNKWVFKKKIGSDGKVETYKARLVAKGFRQRQGIDYEETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGYIEENIFMEQPRGFESQDGSKVCKLKRSIYGL 211          
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: UPI0015BA71EC (hypothetical protein n=1 Tax=Pseudomonas reactans TaxID=117680 RepID=UPI0015BA71EC)

HSP 1 Score: 133 bits (334), Expect = 1.800e-35
Identity = 64/155 (41.29%), Postives = 95/155 (61.29%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDS--PNQVGRLQKAMYGL 489
            DEP    EA   PE  +W+ A+  E+       VW +VD   G+  +G K +FK+K   DG+V T+K R VAK F Q  G+ Y E+ SP     SIR+ LA+ A  D+E WQ+DV+ AFL   +TE++Y+  P+G+ D+  PN+V +L++++YGL
Sbjct:   71 DEPANYQEAVAGPESAKWKEAMDSEIKSMYDNQVWNLVDNVPGRKTVGCKWIFKKKTDMDGKVHTFKARLVAKGFTQTPGVDYDETFSPVAKIKSIRIMLAIAAFHDYEIWQMDVKTAFLNGKLTEDVYMNQPEGFVDAKYPNKVCKLERSIYGL 225          
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: A0A8J5YBS1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YBS1_9ROSI)

HSP 1 Score: 139 bits (351), Expect = 2.740e-35
Identity = 71/156 (45.51%), Postives = 99/156 (63.46%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDSPNQVGR---LQKAMYGL 489
            DEP T  EA  SPE  +W  AL+ EMD      VW +VD P G   +G K VFK+K+  DG V+TYK R VAK FRQ+ G++Y E+ SP     SIR++LA+ A  D+E WQ+DV+ AFL   + E++Y+  P+G+ + P   G+   LQ+++YGL
Sbjct:  444 DEPRTYQEAVASPESEKWLEALRSEMDSMYENQVWTLVDPPKGVKPIGCKWVFKKKIDMDGNVQTYKGRLVAKGFRQIHGVNYDETFSPVAMFKSIRISLAIAAFHDYEIWQMDVKTAFLNGKLEEDVYMTQPEGFVN-PKDAGKICKLQRSIYGL 598          
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: Q7XLR4_ORYSJ (OSJNBb0093G06.7 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XLR4_ORYSJ)

HSP 1 Score: 139 bits (349), Expect = 5.200e-35
Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRD--SPNQVGRLQKAMYGL 489
            DEPTT  E  V P+  +W GA+K E++      VW +VD P+G   +  K VFK+K+  DG V  YK + VAK FRQ++G+ Y E+ SP     SIR+ LA+ A  D+E WQ+DV++AFL   + E++Y+  P G+ D  S  ++ +LQK++YGL
Sbjct:  676 DEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKIDIDGNVHMYKAQLVAKGFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDYEIWQMDVKIAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGL 830          
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: UPI00136360C9 (hypothetical protein n=1 Tax=Ligilactobacillus murinus TaxID=1622 RepID=UPI00136360C9)

HSP 1 Score: 131 bits (330), Expect = 7.500e-35
Identity = 66/155 (42.58%), Postives = 96/155 (61.94%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGY--RDSPNQVGRLQKAMYGL 489
            DEPTT  +A   P+  +W  A+K EM+      VW +VD P G   +G K VFK+K   DG V T+K R VAK F+Q+ GI Y E+ SP     SIR+  A+ A  D+E WQ+DV+ AFL   + E++Y+  P+G+   ++ N+V +LQ+++YGL
Sbjct:    4 DEPTTYQQAMSGPDSEKWLMAMKSEMESMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVITFKGRLVAKGFKQIHGIDYDETFSPVAMLKSIRILFAIAAHYDYEIWQMDVKTAFLNGKLLEDVYMTQPEGFVTPENANKVCKLQRSIYGL 158          
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: UPI000FADDC45 (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI000FADDC45)

HSP 1 Score: 128 bits (321), Expect = 3.210e-34
Identity = 65/155 (41.94%), Postives = 94/155 (60.65%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRD--SPNQVGRLQKAMYGL 489
            +EP +  EA    E  QW+ A+K EM       VW++ D P     +G K VFK+K   DG V T+K R VAK F Q  GI Y E+ SP     SIR+ +A+ A  ++E WQ+DV+ AFL   +TE++Y++ P+G+ D  +PN+V +L K++YGL
Sbjct:   32 NEPVSYGEAVSGNESEQWQEAMKAEMQSMYDNQVWELTDLPQHCKAVGRKWVFKKKTDMDGNVHTFKARLVAKGFTQTHGIDYDETFSPVAMLKSIRILMAISAYFNYEIWQMDVKTAFLNGKLTEDVYMQQPEGFVDPKNPNKVCKLLKSIYGL 186          
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: A0A2I0K9M6_PUNGR (CCHC-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K9M6_PUNGR)

HSP 1 Score: 136 bits (342), Expect = 3.810e-34
Identity = 66/154 (42.86%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDSP-NQVGRLQKAMYGL 489
            D+PTT  EA +  +  +W  A+K EMD      VW +VD P G   +G K +FKRK+G DG+VETYK R VAK +RQ +G+ Y+E+ SP     SIR+ L V A  D+E WQ+DV+ AFL   + E+++++ P G+     ++V +L++++YGL
Sbjct:  389 DDPTTYEEAILDIDSSKWLEAMKSEMDSMSKNQVWDLVDPPKGIVPIGNKWIFKRKIGADGKVETYKARLVAKGYRQKQGVDYEETFSPVAMLKSIRIMLVVAAHYDYEVWQMDVKTAFLNEYIEEDIFMDQPKGFESKDKSKVCKLKRSIYGL 542          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C988E4D1.600e-3743.59hypothetical protein n=3 Tax=Bacteria TaxID=2 RepI... [more]
A0A2I0J8X0_PUNGR9.790e-3744.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0IJP3_PUNGR8.120e-3642.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000D4648531.040e-3543.51hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
UPI0015BA71EC1.800e-3541.29hypothetical protein n=1 Tax=Pseudomonas reactans ... [more]
A0A8J5YBS1_9ROSI2.740e-3545.51Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
Q7XLR4_ORYSJ5.200e-3543.23OSJNBb0093G06.7 protein n=1 Tax=Oryza sativa subsp... [more]
UPI00136360C97.500e-3542.58hypothetical protein n=1 Tax=Ligilactobacillus mur... [more]
UPI000FADDC453.210e-3441.94hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
A0A2I0K9M6_PUNGR3.810e-3442.86CCHC-type domain-containing protein n=1 Tax=Punica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1081contigA-nodosum_M_contig1081:18610..19098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog102107.XP_008223780.1
PFAMsUDPGT
Model size489
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.35e-29
EggNOG OGsCOG2801@1|root,KOG1192@1|root,KOG0017@2759|Eukaryota,KOG1192@2759|Eukaryota
Descriptiontransferase activity, transferring hexosyl groups
Cds size489
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866468.3358302-CDS-A-nodosum_M_contig1081:18609..190981680866468.3358302-CDS-A-nodosum_M_contig1081:18609..19098Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1081 18610..19098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1081.3.1prot_A-nodosum_M_contig1081.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1081 18610..19098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1081.3.1

>prot_A-nodosum_M_contig1081.3.1 ID=prot_A-nodosum_M_contig1081.3.1|Name=mRNA_A-nodosum_M_contig1081.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=163bp
MPTGLASYLPDEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDR
PNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPT
PTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDSP
NQVGRLQKAMYGL
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mRNA from alignment at A-nodosum_M_contig1081:18610..19098-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1081.3.1 ID=mRNA_A-nodosum_M_contig1081.3.1|Name=mRNA_A-nodosum_M_contig1081.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=489bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:18610..19098- (Ascophyllum nodosum dioecious)
ATGCCGACTGGTCTCGCGAGCTACCTACCGGACGAGCCTACCACCCTGCA CGAGGCAAAGGTGTCTCCCGAGTGGCCGCAATGGCGCGGCGCGCTCAAGC GCGAGATGGACGGCCAGATTGCGCGTGGTGTGTGGAAGGTCGTTGATCGA CCCAACGGAAAAACCGTGCTCGGCACTAAGACCGTTTTTAAACGGAAGGT CGGCCAGGATGGCCGTGTAGAAACGTACAAATGCCGCTTCGTGGCCAAGA GTTTCCGCCAGGTCAAGGGGATTCATTACCAAGAGTCATCGTCACCAACA CCTACACAGTCGAGCATCCGGATGGCGCTGGCGGTGATGGCCCTGTTGGA CTGGGAGGGGTGGCAGCTTGACGTAGAAATGGCGTTTCTCGAGGCGGGTG TTACGGAGGAGCTCTACGTTGAGCTCCCCGACGGGTATCGCGACTCGCCG AACCAGGTTGGACGACTGCAGAAGGCCATGTACGGCCTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1081:18610..19098-

>mRNA_A-nodosum_M_contig1081.3.1 ID=mRNA_A-nodosum_M_contig1081.3.1|Name=mRNA_A-nodosum_M_contig1081.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=489bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:18610..19098- (Ascophyllum nodosum dioecious)
ATGCCGACTGGTCTCGCGAGCTACCTACCGGACGAGCCTACCACCCTGCA
CGAGGCAAAGGTGTCTCCCGAGTGGCCGCAATGGCGCGGCGCGCTCAAGC
GCGAGATGGACGGCCAGATTGCGCGTGGTGTGTGGAAGGTCGTTGATCGA
CCCAACGGAAAAACCGTGCTCGGCACTAAGACCGTTTTTAAACGGAAGGT
CGGCCAGGATGGCCGTGTAGAAACGTACAAATGCCGCTTCGTGGCCAAGA
GTTTCCGCCAGGTCAAGGGGATTCATTACCAAGAGTCATCGTCACCAACA
CCTACACAGTCGAGCATCCGGATGGCGCTGGCGGTGATGGCCCTGTTGGA
CTGGGAGGGGTGGCAGCTTGACGTAGAAATGGCGTTTCTCGAGGCGGGTG
TTACGGAGGAGCTCTACGTTGAGCTCCCCGACGGGTATCGCGACTCGCCG
AACCAGGTTGGACGACTGCAGAAGGCCATGTACGGCCTA
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