mRNA_A-nodosum_M_contig1081.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: UPI001C988E4D (hypothetical protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001C988E4D) HSP 1 Score: 140 bits (353), Expect = 1.600e-37 Identity = 68/156 (43.59%), Postives = 102/156 (65.38%), Query Frame = 1
Query: 28 PDEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDS--PNQVGRLQKAMYGL 489
PD+PTT A + + +W+ A+K EMD + GVW +VD P G +G K ++KRK+G DG+VETYK R VAK + Q +G+ Y+E+ SP SIR+ LA+ A D+E Q+DV+ AFL + E+LY+E P G+ S ++V +L++++YGL
Sbjct: 86 PDDPTTYEGAMLDIDSSRWQEAMKSEMDSMYSNGVWTLVDPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEETFSPVAMLKSIRILLAIAAYYDYEICQMDVKTAFLNGNIEEDLYMEQPKGFISSGEDHKVCKLKRSIYGL 241
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: A0A2I0J8X0_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J8X0_PUNGR) HSP 1 Score: 138 bits (347), Expect = 9.790e-37 Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRD--SPNQVGRLQKAMYGL 489
DEPTT EA + P+ +W A++ EM+ VW +VD P G ++G K VFK+K DG V T+K R VAK FRQV G+ Y E+ SP SIR+ LA+ A D+E WQ+DV+ AFL + E++Y+ P+G+ D S +V +LQ+++YGL
Sbjct: 70 DEPTTYAEAVIGPDSEKWLVAMRSEMESMYTNQVWTLVDPPEGAKLIGYKWVFKKKTDMDGNVITFKRRLVAKGFRQVHGVDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPHSAEKVCKLQRSIYGL 224
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: A0A2I0IJP3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IJP3_PUNGR) HSP 1 Score: 137 bits (345), Expect = 8.120e-36 Identity = 66/154 (42.86%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDSP-NQVGRLQKAMYGL 489
D+PTT EA + +W A+K EMD VW +VD P G +G K VFKRK+G DG+VETYK R VAK +RQ +G+ Y+E+ SP S+R+ LA+ A D+E WQ+DV+ AFL + E+++++ P G+ ++V +L++++YGL
Sbjct: 74 DDPTTYEEAISDIDSSKWLEAMKSEMDSMSKNQVWDLVDPPEGIVPIGNKWVFKRKIGADGKVETYKARLVAKGYRQKQGVDYEETFSPVAMLKSLRIMLAIAAHYDYEVWQMDVKTAFLNVSIEEDIFMDQPKGFESKDKSKVCKLKRSIYGL 227
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: UPI000D464853 (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI000D464853) HSP 1 Score: 134 bits (337), Expect = 1.040e-35 Identity = 67/154 (43.51%), Postives = 97/154 (62.99%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDSP-NQVGRLQKAMYGL 489
D+P T EA + +W A+K E+D VW +VD P G +G K VFK+K+G DG+VETYK R VAK FRQ +GI Y+E+ SP SIR+ LA+ A D+E WQ+DV+ AFL + E +++E P G+ ++V +L++++YGL
Sbjct: 58 DDPLTYEEAISDIDSSKWIDAMKSEIDSMYKNQVWDLVDPPEGIVPIGNKWVFKKKIGSDGKVETYKARLVAKGFRQRQGIDYEETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGYIEENIFMEQPRGFESQDGSKVCKLKRSIYGL 211
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: UPI0015BA71EC (hypothetical protein n=1 Tax=Pseudomonas reactans TaxID=117680 RepID=UPI0015BA71EC) HSP 1 Score: 133 bits (334), Expect = 1.800e-35 Identity = 64/155 (41.29%), Postives = 95/155 (61.29%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDS--PNQVGRLQKAMYGL 489
DEP EA PE +W+ A+ E+ VW +VD G+ +G K +FK+K DG+V T+K R VAK F Q G+ Y E+ SP SIR+ LA+ A D+E WQ+DV+ AFL +TE++Y+ P+G+ D+ PN+V +L++++YGL
Sbjct: 71 DEPANYQEAVAGPESAKWKEAMDSEIKSMYDNQVWNLVDNVPGRKTVGCKWIFKKKTDMDGKVHTFKARLVAKGFTQTPGVDYDETFSPVAKIKSIRIMLAIAAFHDYEIWQMDVKTAFLNGKLTEDVYMNQPEGFVDAKYPNKVCKLERSIYGL 225
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: A0A8J5YBS1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YBS1_9ROSI) HSP 1 Score: 139 bits (351), Expect = 2.740e-35 Identity = 71/156 (45.51%), Postives = 99/156 (63.46%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDSPNQVGR---LQKAMYGL 489
DEP T EA SPE +W AL+ EMD VW +VD P G +G K VFK+K+ DG V+TYK R VAK FRQ+ G++Y E+ SP SIR++LA+ A D+E WQ+DV+ AFL + E++Y+ P+G+ + P G+ LQ+++YGL
Sbjct: 444 DEPRTYQEAVASPESEKWLEALRSEMDSMYENQVWTLVDPPKGVKPIGCKWVFKKKIDMDGNVQTYKGRLVAKGFRQIHGVNYDETFSPVAMFKSIRISLAIAAFHDYEIWQMDVKTAFLNGKLEEDVYMTQPEGFVN-PKDAGKICKLQRSIYGL 598
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: Q7XLR4_ORYSJ (OSJNBb0093G06.7 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XLR4_ORYSJ) HSP 1 Score: 139 bits (349), Expect = 5.200e-35 Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRD--SPNQVGRLQKAMYGL 489
DEPTT E V P+ +W GA+K E++ VW +VD P+G + K VFK+K+ DG V YK + VAK FRQ++G+ Y E+ SP SIR+ LA+ A D+E WQ+DV++AFL + E++Y+ P G+ D S ++ +LQK++YGL
Sbjct: 676 DEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKIDIDGNVHMYKAQLVAKGFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDYEIWQMDVKIAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGL 830
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: UPI00136360C9 (hypothetical protein n=1 Tax=Ligilactobacillus murinus TaxID=1622 RepID=UPI00136360C9) HSP 1 Score: 131 bits (330), Expect = 7.500e-35 Identity = 66/155 (42.58%), Postives = 96/155 (61.94%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGY--RDSPNQVGRLQKAMYGL 489
DEPTT +A P+ +W A+K EM+ VW +VD P G +G K VFK+K DG V T+K R VAK F+Q+ GI Y E+ SP SIR+ A+ A D+E WQ+DV+ AFL + E++Y+ P+G+ ++ N+V +LQ+++YGL
Sbjct: 4 DEPTTYQQAMSGPDSEKWLMAMKSEMESMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVITFKGRLVAKGFKQIHGIDYDETFSPVAMLKSIRILFAIAAHYDYEIWQMDVKTAFLNGKLLEDVYMTQPEGFVTPENANKVCKLQRSIYGL 158
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: UPI000FADDC45 (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI000FADDC45) HSP 1 Score: 128 bits (321), Expect = 3.210e-34 Identity = 65/155 (41.94%), Postives = 94/155 (60.65%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRD--SPNQVGRLQKAMYGL 489
+EP + EA E QW+ A+K EM VW++ D P +G K VFK+K DG V T+K R VAK F Q GI Y E+ SP SIR+ +A+ A ++E WQ+DV+ AFL +TE++Y++ P+G+ D +PN+V +L K++YGL
Sbjct: 32 NEPVSYGEAVSGNESEQWQEAMKAEMQSMYDNQVWELTDLPQHCKAVGRKWVFKKKTDMDGNVHTFKARLVAKGFTQTHGIDYDETFSPVAMLKSIRILMAISAYFNYEIWQMDVKTAFLNGKLTEDVYMQQPEGFVDPKNPNKVCKLLKSIYGL 186
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Match: A0A2I0K9M6_PUNGR (CCHC-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K9M6_PUNGR) HSP 1 Score: 136 bits (342), Expect = 3.810e-34 Identity = 66/154 (42.86%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPNGKTVLGTKTVFKRKVGQDGRVETYKCRFVAKSFRQVKGIHYQESSSPTPTQSSIRMALAVMALLDWEGWQLDVEMAFLEAGVTEELYVELPDGYRDSP-NQVGRLQKAMYGL 489
D+PTT EA + + +W A+K EMD VW +VD P G +G K +FKRK+G DG+VETYK R VAK +RQ +G+ Y+E+ SP SIR+ L V A D+E WQ+DV+ AFL + E+++++ P G+ ++V +L++++YGL
Sbjct: 389 DDPTTYEEAILDIDSSKWLEAMKSEMDSMSKNQVWDLVDPPKGIVPIGNKWIFKRKIGADGKVETYKARLVAKGYRQKQGVDYEETFSPVAMLKSIRIMLVVAAHYDYEVWQMDVKTAFLNEYIEEDIFMDQPKGFESKDKSKVCKLKRSIYGL 542 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1081.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1081.3.1 >prot_A-nodosum_M_contig1081.3.1 ID=prot_A-nodosum_M_contig1081.3.1|Name=mRNA_A-nodosum_M_contig1081.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=163bp MPTGLASYLPDEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRback to top mRNA from alignment at A-nodosum_M_contig1081:18610..19098- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1081.3.1 ID=mRNA_A-nodosum_M_contig1081.3.1|Name=mRNA_A-nodosum_M_contig1081.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=489bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:18610..19098- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1081:18610..19098- >mRNA_A-nodosum_M_contig1081.3.1 ID=mRNA_A-nodosum_M_contig1081.3.1|Name=mRNA_A-nodosum_M_contig1081.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=489bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:18610..19098- (Ascophyllum nodosum dioecious)back to top |