mRNA_A-nodosum_M_contig1081.10.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 4.830e-16 Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 10 TPHQALQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGDSTNEPYSSNCCN*TGSKKGRGRGCI 351
TP LQQLQ F VP T+F +L +L++ V +V+ V +D T+QVAVKAGV DQ+ATL A +F GRN A+P+ S+E L+++L D T+ ++ T S + RG G +
Sbjct: 115 TPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFA--EDGTLQVAVKAGVTDQYATLTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTA-----TASVRLRGVGSV 221
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5KZQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ9_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 7.110e-15 Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 10 TPHQALQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGDSTNEPYSSNCCN*TGSKKGRGRGCI 351
TP LQQLQ F VP T+F +L +L++ V +V+ V +D T+QVAVKAGV DQ+AT A +F GRN A+P+ S+E L+++L D T+ ++ T S RG G +
Sbjct: 1166 TPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFA--EDGTLQVAVKAGVTDQYATCTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTA-----TASVHVRGVGSV 1272
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5JI85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI85_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 2.250e-14 Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 25 LQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGDSTNEPYSSNCCN*TGSKKGRGRG 345
LQQLQ F VP T+F +L EL++ V +V+ V +D T+QVAVKAGV DQFATL A +F GRN A+P+ ++++L+ +L E N T S + RG G
Sbjct: 160 LQQLQNFAVPAGTTFKAYLEELKVLVESVQLVGFA--EDGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDNLDDLMAAL-----EDMIENTTTATSSTRVRGIG 259
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5JVS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS0_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 3.590e-14 Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 25 LQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGDSTNEPYSSNCCN*TGSKKGRGRG 345
LQQLQ F VP T+F +L EL++ V +V+ V +D T+QVAVKAGV DQFATL A +F GRN A+P+ +++L+ +L E N T S + RG G
Sbjct: 19 LQQLQKFAVPVGTTFKAYLEELKVLVESVQLVGFA--EDGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDKLDDLMAAL-----EYMIENTTTATSSTRVRGVG 118
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5KFF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF1_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 3.580e-13 Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 25 LQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGD---STNEPYSSNCCN*TGSKKGRG 339
LQQLQ F VP T+F +L EL++ V +V+ V +D T+QVAVKAGV DQFATL A +F GRN A+P+ +++L+ + D +T SS GS RG
Sbjct: 450 LQQLQNFAVPVDTTFKAYLEELKVLVESVQLVGFA--EDGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDKLDDLMVAFEDMIENTTTATSSTRVRGVGSAVSRG 555
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 1.320e-8 Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 1 SPSTPHQALQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAG----RNRSAVPFG 243
S S+P + + LQTF VP T ++++L+ L+ V NV+++A+V P D+T+Q+AV+ V DQ++ L AS+F G RN AV G
Sbjct: 475 SSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGRNFKAVKGG 559
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 6.890e-7 Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 7 STPHQALQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPF 240
S+P + + LQTF VP T + ++L+ L+ NV+++ALV P D+T+Q+AV+ V DQ++ L AS+ G+ V F
Sbjct: 48 SSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQF 125 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1081.10.1 >prot_A-nodosum_M_contig1081.10.1 ID=prot_A-nodosum_M_contig1081.10.1|Name=mRNA_A-nodosum_M_contig1081.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=56bp MQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGDSTNEPYSback to top mRNA from alignment at A-nodosum_M_contig1081:134784..135237- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1081.10.1 ID=mRNA_A-nodosum_M_contig1081.10.1|Name=mRNA_A-nodosum_M_contig1081.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=454bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:134784..135237- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1081:134784..135237- >mRNA_A-nodosum_M_contig1081.10.1 ID=mRNA_A-nodosum_M_contig1081.10.1|Name=mRNA_A-nodosum_M_contig1081.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=168bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:134784..135237- (Ascophyllum nodosum dioecious)back to top |