mRNA_A-nodosum_M_contig1081.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1081.10.1
Unique NamemRNA_A-nodosum_M_contig1081.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.830e-16
Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   10 TPHQALQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGDSTNEPYSSNCCN*TGSKKGRGRGCI 351
            TP   LQQLQ F VP  T+F  +L +L++ V +V+ V     +D T+QVAVKAGV DQ+ATL A +F GRN  A+P+ S+E L+++L D T+   ++     T S + RG G +
Sbjct:  115 TPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFA--EDGTLQVAVKAGVTDQYATLTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTA-----TASVRLRGVGSV 221          
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5KZQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 7.110e-15
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   10 TPHQALQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGDSTNEPYSSNCCN*TGSKKGRGRGCI 351
            TP   LQQLQ F VP  T+F  +L +L++ V +V+ V     +D T+QVAVKAGV DQ+AT  A +F GRN  A+P+ S+E L+++L D T+   ++     T S   RG G +
Sbjct: 1166 TPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFA--EDGTLQVAVKAGVTDQYATCTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTA-----TASVHVRGVGSV 1272          
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5JI85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI85_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.250e-14
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   25 LQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGDSTNEPYSSNCCN*TGSKKGRGRG 345
            LQQLQ F VP  T+F  +L EL++ V +V+ V     +D T+QVAVKAGV DQFATL A +F GRN  A+P+ ++++L+ +L     E    N    T S + RG G
Sbjct:  160 LQQLQNFAVPAGTTFKAYLEELKVLVESVQLVGFA--EDGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDNLDDLMAAL-----EDMIENTTTATSSTRVRGIG 259          
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5JVS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.590e-14
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   25 LQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGDSTNEPYSSNCCN*TGSKKGRGRG 345
            LQQLQ F VP  T+F  +L EL++ V +V+ V     +D T+QVAVKAGV DQFATL A +F GRN  A+P+  +++L+ +L     E    N    T S + RG G
Sbjct:   19 LQQLQKFAVPVGTTFKAYLEELKVLVESVQLVGFA--EDGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDKLDDLMAAL-----EYMIENTTTATSSTRVRGVG 118          
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5KFF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.580e-13
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   25 LQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGD---STNEPYSSNCCN*TGSKKGRG 339
            LQQLQ F VP  T+F  +L EL++ V +V+ V     +D T+QVAVKAGV DQFATL A +F GRN  A+P+  +++L+ +  D   +T    SS      GS   RG
Sbjct:  450 LQQLQNFAVPVDTTFKAYLEELKVLVESVQLVGFA--EDGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDKLDDLMVAFEDMIENTTTATSSTRVRGVGSAVSRG 555          
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.320e-8
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 SPSTPHQALQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAG----RNRSAVPFG 243
            S S+P + +  LQTF VP  T ++++L+ L+  V NV+++A+V P D+T+Q+AV+  V DQ++ L AS+F G    RN  AV  G
Sbjct:  475 SSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGRNFKAVKGG 559          
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 6.890e-7
Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    7 STPHQALQQLQTFQVPEKTSFADFLSELRIAVVNVKDVALVLPDDSTMQVAVKAGVDDQFATLAASIFAGRNRSAVPF 240
            S+P + +  LQTF VP  T + ++L+ L+    NV+++ALV P D+T+Q+AV+  V DQ++ L AS+  G+    V F
Sbjct:   48 SSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQF 125          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1081.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KNG1_9PHAE4.830e-1643.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZQ9_9PHAE7.110e-1542.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI85_9PHAE2.250e-1444.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS0_9PHAE3.590e-1444.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFF1_9PHAE3.580e-1344.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K255_9PHAE1.320e-842.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0Q4_9PHAE6.890e-739.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1081contigA-nodosum_M_contig1081:134784..135237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size454
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866468.3691442-UTR-A-nodosum_M_contig1081:134783..1349221680866468.3691442-UTR-A-nodosum_M_contig1081:134783..134922Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1081 134784..134922 -
1680866468.3926764-UTR-A-nodosum_M_contig1081:135090..1352371680866468.3926764-UTR-A-nodosum_M_contig1081:135090..135237Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1081 135091..135237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866468.3807023-CDS-A-nodosum_M_contig1081:134922..1350901680866468.3807023-CDS-A-nodosum_M_contig1081:134922..135090Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1081 134923..135090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1081.10.1prot_A-nodosum_M_contig1081.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1081 134923..135090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1081.10.1

>prot_A-nodosum_M_contig1081.10.1 ID=prot_A-nodosum_M_contig1081.10.1|Name=mRNA_A-nodosum_M_contig1081.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=56bp
MQVAVKAGVDDQFATLAASIFAGRNRSAVPFGSVEELLDSLGDSTNEPYS
SNCCN*
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mRNA from alignment at A-nodosum_M_contig1081:134784..135237-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1081.10.1 ID=mRNA_A-nodosum_M_contig1081.10.1|Name=mRNA_A-nodosum_M_contig1081.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=454bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:134784..135237- (Ascophyllum nodosum dioecious)
AGCCCTTCTACGCCGCACCAAGCACTGCAGCAGTTGCAGACCTTCCAAGT ACCCGAGAAGACCTCGTTCGCGGACTTCCTATCCGAGTTGCGCATAGCAG TGGTGAATGTTAAGGATGTAGCTCTCGTCCTTCCCGATGATAGCACGATG CAAGTTGCGGTGAAGGCTGGCGTCGATGATCAGTTCGCGACTTTGGCTGC CTCAATCTTCGCGGGTAGGAACCGGTCAGCAGTTCCTTTTGGTAGTGTTG AAGAACTGCTAGATTCTCTGGGGGACTCGACGAATGAACCGTACTCCAGC AACTGCTGCAACTAGACTGGGTCCAAGAAAGGCAGGGGGCGGGGCTGTAT CTGGATCTGCTCGTAGTGGAAATGTGTTCCCGGTTGGTGGTTAAGAGAAG AAGTCGAAGCTAGATGATGCATGGTACTGGAAACATGATGAGATGGAATA CGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1081:134784..135237-

>mRNA_A-nodosum_M_contig1081.10.1 ID=mRNA_A-nodosum_M_contig1081.10.1|Name=mRNA_A-nodosum_M_contig1081.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=168bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:134784..135237- (Ascophyllum nodosum dioecious)
ATGCAAGTTGCGGTGAAGGCTGGCGTCGATGATCAGTTCGCGACTTTGGC
TGCCTCAATCTTCGCGGGTAGGAACCGGTCAGCAGTTCCTTTTGGTAGTG
TTGAAGAACTGCTAGATTCTCTGGGGGACTCGACGAATGAACCGTACTCC
AGCAACTGCTGCAACTAG
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