mRNA_A-nodosum_M_contig10801.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10801.2.1
Unique NamemRNA_A-nodosum_M_contig10801.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10801.2.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.090e-18
Identity = 48/110 (43.64%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:   22 TRPFQLCYGDLMGPFTPEAYGVFKYISKITDHFTRWTAVYLLENKSCAFDAFRLFVTSIVIPCGSRVIRWRADKGGECTSEAFKQYRLETGVTQEFAATNTPQQNGVSER 351
            T P QL Y D MG  TP A G F Y+SK TD ++    +YLL+  S    A   +   +  P G R+   R + GGE  +  F +Y +++ +T E+AATNTPQQNGVSER
Sbjct:  365 TAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQQNGVSER 474
[Close]
BLAST of mRNA_A-nodosum_M_contig10801.2.1 vs. uniprot
Match: A0A2K3PLM3_TRIPR (Putative CC-NBS-LRR resistance protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PLM3_TRIPR)

HSP 1 Score: 88.6 bits (218), Expect = 4.250e-18
Identity = 44/117 (37.61%), Postives = 68/117 (58.12%), Query Frame = 1 
Query:    1 KSQHAGITRPFQLCYGDLMGPFTPEAYGVFKYISKITDHFTRWTAVYLLENKSCAFDAFRLFVTSIVIPCGSRVIRWRADKGGECTSEAFKQYRLETGVTQEFAATNTPQQNGVSER 351
            K  +   T   +L + D+ GP TP++ G  +Y   +TD F+R T +Y+L+ KS AF++F+ F   +    G  +   R ++GGE TS AF  +  + G+ ++  A  TPQQNGVSER
Sbjct:  239 KQSNWRATTRLELVHSDICGPITPQSNGGSRYFMTLTDDFSRKTWIYVLKEKSSAFESFKFFKALVEKESGCAIQCLRTERGGEYTSNAFNDFCSKEGIKRQLTAAYTPQQNGVSER 355
[Close]
BLAST of mRNA_A-nodosum_M_contig10801.2.1 vs. uniprot
Match: A0A2Z6NJS7_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NJS7_TRISU)

HSP 1 Score: 88.6 bits (218), Expect = 4.330e-18
Identity = 41/106 (38.68%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:   34 QLCYGDLMGPFTPEAYGVFKYISKITDHFTRWTAVYLLENKSCAFDAFRLFVTSIVIPCGSRVIRWRADKGGECTSEAFKQYRLETGVTQEFAATNTPQQNGVSER 351
            +L + D+ GP  P + G  +Y    TD ++R T VY+++ KS AF+ F++F   +    G+ ++  R+D+GGE TS  F ++  E G+ ++  A  TPQQNGVSER
Sbjct:  488 ELIHSDICGPINPSSNGGNRYFITFTDDYSRMTWVYVMKEKSSAFEVFKVFKAMVEKETGTSIVCLRSDRGGEYTSNVFNEFCREEGIKRQLTAAYTPQQNGVSER 593
[Close]
BLAST of mRNA_A-nodosum_M_contig10801.2.1 vs. uniprot
Match: A0A2K3KBM9_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KBM9_TRIPR)

HSP 1 Score: 83.2 bits (204), Expect = 6.820e-18
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:   22 TRPFQLCYGDLMGPFTPEAYGVFKYISKITDHFTRWTAVYLLENKSCAFDAFRLFVTSIVIPCGSRVIRWRADKGGECTSEAFKQYRLETGVTQEFAATNTPQQNG 339
            T   +L + D+ GP TP++ G  +Y    TD F+R T +Y+L+ KS AF+ F +F   +    G  +  +R D+GGE TS AF  +  + G+ ++  AT TPQQNG
Sbjct:   47 TTRLELVHSDICGPITPQSNGGSRYFMTFTDDFSRKTWIYVLKEKSSAFENFIIFKALVEKEAGCAIQCFRTDRGGEYTSNAFNDFCSKEGIKRQLTATYTPQQNG 152
[Close]
BLAST of mRNA_A-nodosum_M_contig10801.2.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.800e-18
Identity = 47/110 (42.73%), Postives = 63/110 (57.27%), Query Frame = 1 
Query:   22 TRPFQLCYGDLMGPFTPEAYGVFKYISKITDHFTRWTAVYLLENKSCAFDAFRLFVTSIVIPCGSRVIRWRADKGGECTSEAFKQYRLETGVTQEFAATNTPQQNGVSER 351
            T P  L Y D+MG  TP A G F Y+S   D ++R   +YLL+ KS    A   +   +  P G  +   R D+G E  +  F  Y +++G+T E+AATNTPQQNGVSER
Sbjct:  163 TAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYCMDSGITIEYAATNTPQQNGVSER 272
[Close]
BLAST of mRNA_A-nodosum_M_contig10801.2.1 vs. uniprot
Match: A0A2Z6NJ75_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NJ75_TRISU)

HSP 1 Score: 86.7 bits (213), Expect = 2.040e-17
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 1 
Query:   22 TRPFQLCYGDLMGPFTPEAYGVFKYISKITDHFTRWTAVYLLENKSCAFDAFRLFVTSIVIPCGSRVIRWRADKGGECTSEAFKQYRLETGVTQEFAATNTPQQNGVSER 351
            T   QL + D+ GP  P + G  +Y   +TD F+R T VY+L+ KS AF+ FR F   + +  G  +   R D+GGE TS AF ++    G+ ++     TPQQNGVSER
Sbjct:  479 TTKLQLIHSDICGPINPCSNGGKRYFLTLTDDFSRKTWVYILKEKSEAFETFRNFKAMVELKSGCVIQMLRTDRGGEFTSNAFNEFCKSKGIKRQLTTAYTPQQNGVSER 588
[Close]
BLAST of mRNA_A-nodosum_M_contig10801.2.1 vs. uniprot
Match: A0A392LYK8_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LYK8_9FABA)

HSP 1 Score: 86.7 bits (213), Expect = 2.050e-17
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:   34 QLCYGDLMGPFTPEAYGVFKYISKITDHFTRWTAVYLLENKSCAFDAFRLFVTSIVIPCGSRVIRWRADKGGECTSEAFKQYRLETGVTQEFAATNTPQQNGVSER 351
            +L + D+ GP  P++ G  +Y    TD F+R T +YLL++KS AF+ F+ F   +    G  +   R+D+GGE TS AF +Y    G+ ++  A  TPQQNGVSER
Sbjct:  489 ELIHSDICGPINPQSNGGNRYFMTFTDDFSRKTWLYLLKDKSSAFEVFKNFKALVEKESGCAIQCLRSDRGGEYTSNAFNEYCSVEGIKRQLTAAYTPQQNGVSER 594
[Close]
BLAST of mRNA_A-nodosum_M_contig10801.2.1 vs. uniprot
Match: A0A2Z6N0M9_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N0M9_TRISU)

HSP 1 Score: 86.3 bits (212), Expect = 2.790e-17
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 1 
Query:   22 TRPFQLCYGDLMGPFTPEAYGVFKYISKITDHFTRWTAVYLLENKSCAFDAFRLFVTSIVIPCGSRVIRWRADKGGECTSEAFKQYRLETGVTQEFAATNTPQQNGVSER 351
            T   QL + D+ GP  P + G  +Y    TD F+R T VY+L+ KS AF+ F++F   + +  G  +   R D+GGE TS  F ++    G+ ++     TPQQNGVSER
Sbjct:  482 TTKLQLIHSDICGPINPSSNGGKRYFLTFTDDFSRKTWVYVLKEKSEAFEIFKIFKAMVELESGCMIQALRTDRGGEFTSSVFNEFCNSKGIKRQLTTAYTPQQNGVSER 591
[Close]
BLAST of mRNA_A-nodosum_M_contig10801.2.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.770e-17
Identity = 49/113 (43.36%), Postives = 61/113 (53.98%), Query Frame = 1 
Query:   19 ITRPFQLCYGDLMGPFTPEAY---GVFKYISKITDHFTRWTAVYLLENKSCAFDAFRLFVTSIVIPCGSRVIRWRADKGGECTSEAFKQYRLETGVTQEFAATNTPQQNGVSE 348
            ++RP QL   D MGP  P A    G F Y  KITD +T+   VYLL  KS   +A   +   +    G R+   R DKGGE T   F+ Y   + +  E+AATNTPQQ GVSE
Sbjct:   98 LSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSE 210
[Close]
BLAST of mRNA_A-nodosum_M_contig10801.2.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.860e-17
Identity = 50/114 (43.86%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:   19 ITRPFQLCYGDLMGPFTPEAY---GVFKYISKITDHFTRWTAVYLLENKSCAFDAFRLFVTSIVIPCGSRVIRWRADKGGECTSEAFKQYRLETGVTQEFAATNTPQQNGVSER 351
            ++RP QL   D MGP  P A    G F Y  KITD +T+   VYLL  KS   +A   +   +    G R+   R DKGGE T   F+ Y   + +  E+AATNTPQQ GVSER
Sbjct:   98 LSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSER 211
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10801.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYD3_9PHAE3.090e-1843.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2K3PLM3_TRIPR4.250e-1837.61Putative CC-NBS-LRR resistance protein n=1 Tax=Tri... [more]
A0A2Z6NJS7_TRISU4.330e-1838.68Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A2K3KBM9_TRIPR6.820e-1838.68Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A6H5JT61_9PHAE7.800e-1842.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A2Z6NJ75_TRISU2.040e-1740.91Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A392LYK8_9FABA2.050e-1741.51Copia-type polyprotein n=1 Tax=Trifolium medium Ta... [more]
A0A2Z6N0M9_TRISU2.790e-1739.09Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A6H5KZ34_9PHAE3.770e-1743.36Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K500_9PHAE6.860e-1743.86Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10801contigA-nodosum_M_contig10801:10525..10875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3711.Bra002340.1-P
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size351
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.91e-19
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta
DescriptionMitochondrial protein
Cds size351
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866467.5162961-CDS-A-nodosum_M_contig10801:10524..108751680866467.5162961-CDS-A-nodosum_M_contig10801:10524..10875Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10801 10525..10875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10801.2.1prot_A-nodosum_M_contig10801.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10801 10525..10875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10801.2.1

>prot_A-nodosum_M_contig10801.2.1 ID=prot_A-nodosum_M_contig10801.2.1|Name=mRNA_A-nodosum_M_contig10801.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
KSQHAGITRPFQLCYGDLMGPFTPEAYGVFKYISKITDHFTRWTAVYLLE
NKSCAFDAFRLFVTSIVIPCGSRVIRWRADKGGECTSEAFKQYRLETGVT
QEFAATNTPQQNGVSER
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mRNA from alignment at A-nodosum_M_contig10801:10525..10875-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10801.2.1 ID=mRNA_A-nodosum_M_contig10801.2.1|Name=mRNA_A-nodosum_M_contig10801.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig10801:10525..10875- (Ascophyllum nodosum dioecious)
AAATCTCAGCATGCCGGCATCACCCGGCCTTTCCAGCTTTGCTACGGCGA
CCTCATGGGTCCTTTCACCCCCGAGGCCTACGGGGTTTTCAAATACATCA
GCAAGATAACAGACCACTTCACAAGGTGGACCGCCGTCTACTTGCTGGAG
AACAAGAGCTGCGCATTCGACGCCTTTCGCCTGTTCGTCACATCGATTGT
CATCCCTTGCGGTAGCCGAGTCATTCGCTGGCGTGCCGACAAAGGAGGGG
AATGCACGAGTGAAGCGTTCAAGCAGTATCGCTTGGAAACGGGCGTCACC
CAGGAGTTTGCGGCCACCAACACGCCTCAGCAAAATGGGGTGTCCGAGCG
C
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10801:10525..10875-

>mRNA_A-nodosum_M_contig10801.2.1 ID=mRNA_A-nodosum_M_contig10801.2.1|Name=mRNA_A-nodosum_M_contig10801.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig10801:10525..10875- (Ascophyllum nodosum dioecious)
AAATCTCAGCATGCCGGCATCACCCGGCCTTTCCAGCTTTGCTACGGCGA
CCTCATGGGTCCTTTCACCCCCGAGGCCTACGGGGTTTTCAAATACATCA
GCAAGATAACAGACCACTTCACAAGGTGGACCGCCGTCTACTTGCTGGAG
AACAAGAGCTGCGCATTCGACGCCTTTCGCCTGTTCGTCACATCGATTGT
CATCCCTTGCGGTAGCCGAGTCATTCGCTGGCGTGCCGACAAAGGAGGGG
AATGCACGAGTGAAGCGTTCAAGCAGTATCGCTTGGAAACGGGCGTCACC
CAGGAGTTTGCGGCCACCAACACGCCTCAGCAAAATGGGGTGTCCGAGCG
C
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