mRNA_A-nodosum_M_contig1080.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1080.5.1
Unique NamemRNA_A-nodosum_M_contig1080.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1080.5.1 vs. uniprot
Match: D7FRU4_ECTSI (BZIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRU4_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 3.460e-9
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 RTALLSNSLVVSREENDSRKQEMASLREQNSFLRGMLSAKGVAHELPPLLP 153
            R   LS SL  SR+E  S KQE+ASLREQNSFLRGMLSA G A +LPP++P
Sbjct:  340 RADTLSKSLAASRDETASLKQEIASLREQNSFLRGMLSAHGSAIDLPPIMP 390
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1080.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRU4_ECTSI3.460e-966.67BZIP domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1080contigA-nodosum_M_contig1080:193708..193937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size231
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866467.4012604-CDS-A-nodosum_M_contig1080:193709..1939371680866467.4012604-CDS-A-nodosum_M_contig1080:193709..193937Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1080 193710..193937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1080.5.1prot_A-nodosum_M_contig1080.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1080 193710..193937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1080.5.1

>prot_A-nodosum_M_contig1080.5.1 ID=prot_A-nodosum_M_contig1080.5.1|Name=mRNA_A-nodosum_M_contig1080.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=76bp
RTALLSNSLVVSREENDSRKQEMASLREQNSFLRGMLSAKGVAHELPPLL
PISSIRQSSGSNGGGGGSAVTAVNAV
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mRNA from alignment at A-nodosum_M_contig1080:193708..193937-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1080.5.1 ID=mRNA_A-nodosum_M_contig1080.5.1|Name=mRNA_A-nodosum_M_contig1080.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=230bp|location=Sequence derived from alignment at A-nodosum_M_contig1080:193708..193937- (Ascophyllum nodosum dioecious)
CGCACGGCGTTGCTGTCGAACAGCCTGGTCGTATCTCGCGAAGAAAACGA
CTCTCGTAAGCAAGAGATGGCCTCCCTGCGGGAACAGAACTCTTTCCTCA
GAGGCATGCTTTCCGCTAAGGGCGTCGCGCATGAACTACCACCGCTTCTT
CCGATTTCAAGTATCCGACAGTCTAGTGGTAGTAACGGAGGCGGCGGAGG
GAGCGCGGTCACAGCCGTGAATGCAGTCGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1080:193708..193937-

>mRNA_A-nodosum_M_contig1080.5.1 ID=mRNA_A-nodosum_M_contig1080.5.1|Name=mRNA_A-nodosum_M_contig1080.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at A-nodosum_M_contig1080:193708..193937- (Ascophyllum nodosum dioecious)
CGCACGGCGTTGCTGTCGAACAGCCTGGTCGTATCTCGCGAAGAAAACGA
CTCTCGTAAGCAAGAGATGGCCTCCCTGCGGGAACAGAACTCTTTCCTCA
GAGGCATGCTTTCCGCTAAGGGCGTCGCGCATGAACTACCACCGCTTCTT
CCGATTTCAAGTATCCGACAGTCTAGTGGTAGTAACGGAGGCGGCGGAGG
GAGCGCGGTCACAGCCGTGAATGCAGTC
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