mRNA_A-nodosum_M_contig108.39.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig108.39.1
Unique NamemRNA_A-nodosum_M_contig108.39.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig108.39.1 vs. uniprot
Match: A0A6H5KAD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD9_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.810e-68
Identity = 135/310 (43.55%), Postives = 179/310 (57.74%), Query Frame = 1 
Query:  124 VMQRLHPMPTNDA--WPPASKIANVRDNLLYLGSPTLDAGLQVTWGNNPAYWAQVDEPTSPRGRIWRLNMVCWLSVITTVPAPKPGLYAAFFKIRKYDIRSNLLSFSAEWKANAAGTTKQ-----GFLHTNGSPTSGSFTLQESDAIASWSHRRLYTSVDPGAWMLLHVGNVVVRRRAHALD----------------GGTEADDDGLEVVLSFGGDNPYWCSNLDVDFAAIAPLRLCWDITRVIWIGQMK----------GKSSVDGVTQGANNG-DEEGVHPQGGISPLYQVSKRLIRLILEFSQPTL 951
            +M+ ++P+PT++A  WP A +I     N L+LG   LD+GL VTWG+   +W +V+EPTSPRG IW LN VCWLSV  TVPAP PG YA FF+IR+   R  LL FSAEWK  A    +      GFL T  S  +     Q+ +A  SW HR+ Y   +PG W+LLH+GN++VR  + A                  GG    + G +V +SFGG+NP W SNL+VDFAAIAPLRL WDI RV+ IG  K          G++  +G+ +      D+ G+      SPL  +   ++ L+LEFSQPTL
Sbjct:    1 MMRHVYPLPTDEAAVWPRAEQIFG--HNRLHLGRRILDSGLGVTWGDGQ-HWVEVNEPTSPRGSIWHLNRVCWLSVHATVPAPPPGCYAGFFRIRQPIQRRPLLRFSAEWKVAATMAVRPAGDDFGFLSTTDSQRAEGV-RQDGEASVSWIHRQEYHEDNPGGWLLLHIGNIMVRESSEAQQSAAATEGGASSATIGTGGPAVGNRGRDVAISFGGENPNWMSNLEVDFAAIAPLRLSWDIERVLMIGNRKTDAILPPAELGQAHEEGLDRAVEAAPDDGGIGSHLCCSPLALLPHAVMTLVLEFSQPTL 306
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAD9_9PHAE1.810e-6843.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig108contigA-nodosum_M_contig108:494859..500593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1721
Hectar predicted targeting categoryother localisation
Exons2
Cds size906
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866466.2010362-UTR-A-nodosum_M_contig108:494858..4955471680866466.2010362-UTR-A-nodosum_M_contig108:494858..495547Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig108 494859..495547 -
1680866466.2394173-UTR-A-nodosum_M_contig108:500467..5005931680866466.2394173-UTR-A-nodosum_M_contig108:500467..500593Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig108 500468..500593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866466.2166545-CDS-A-nodosum_M_contig108:495547..4963651680866466.2166545-CDS-A-nodosum_M_contig108:495547..496365Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 495548..496365 -
1680866466.2299354-CDS-A-nodosum_M_contig108:500379..5004671680866466.2299354-CDS-A-nodosum_M_contig108:500379..500467Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 500380..500467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig108.39.1prot_A-nodosum_M_contig108.39.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig108 495548..500467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig108.39.1

>prot_A-nodosum_M_contig108.39.1 ID=prot_A-nodosum_M_contig108.39.1|Name=mRNA_A-nodosum_M_contig108.39.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=302bp
MQRLHPMPTNDAWPPASKIANVRDNLLYLGSPTLDAGLQVTWGNNPAYWA
QVDEPTSPRGRIWRLNMVCWLSVITTVPAPKPGLYAAFFKIRKYDIRSNL
LSFSAEWKANAAGTTKQGFLHTNGSPTSGSFTLQESDAIASWSHRRLYTS
VDPGAWMLLHVGNVVVRRRAHALDGGTEADDDGLEVVLSFGGDNPYWCSN
LDVDFAAIAPLRLCWDITRVIWIGQMKGKSSVDGVTQGANNGDEEGVHPQ
GGISPLYQVSKRLIRLILEFSQPTLTQAFDGNSSEPEGDEGKDDSGTWRV
F*
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mRNA from alignment at A-nodosum_M_contig108:494859..500593-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig108.39.1 ID=mRNA_A-nodosum_M_contig108.39.1|Name=mRNA_A-nodosum_M_contig108.39.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5735bp|location=Sequence derived from alignment at A-nodosum_M_contig108:494859..500593- (Ascophyllum nodosum dioecious)
GACCTTTTCTACGTACGCGAGGACGCTGATCCCAAACCCTCATCTACCAC
AACCACTGAAGTGCTACAGGACTCCCGTTCAAGATCTACATTCGCCCCGA
ATCTCCGATAATAATCAATCGGAGTGATGCAGCGGCTGCACCCCATGCCC
ACGAACGATGCATGGCCGCCGGCCAGCAAGATTGCAAATGTACGAGACAA
CTTGCTCTATCTAGGTGAGTAGTAAGAGAGAAGCTCTGCAGTGTGGATAA
ACACGTCCTTTTTCTTCGTGCATACCGCTGGGGCCTCGAGTAGTTTGGGA
ACTGGATTCATCGAAATGCTCGAGATTCACAAATGAAATAATTGGAGGGT
TGTACTTTCAACATGCCCAGCTCATACCATTAGTGGGTGTGGGAAAGAGA
GGCGTCCTTGGCACTTTTATTTTATGTGCGGGCACTTATTGGTCGAACTG
ACGGGGCATGATGACAGTGCTGCTGATATTATCTTACATAATATATACCT
GGTAGGGCTATACATTATGCACTCCTGAAAGCCGGTCGACCCCGGTAGCT
CAGTTGGCACCTCGTAACCTTCTGACACGTTGGGACGTGAGTTCGATCCC
GGCAAACGGGATTTTTCTCACTAAAAACTAAAAAACCAAAATAAAAATGC
CCAACGGGTGGAGAACGATTAATTCGTTAGTAAACAAAATTCGACTTCAC
GGTCGACGAGGGAAAGGAATGGCTGAATCCTTCTCGCGACAAAAATCAAG
GCACGCACCGCAGAAGGAAGGTGGATTAAAAATCCTGTGTGACCTTCCTC
CTGTGTGACCCCGGCTGGTACGTCCAACGAACTTGATGTCCAGAATGGAT
GGGAAGAAAACACGCACACACACACTCCTGCGTTCATAGTACATACCGTA
ATGTTTACCGATAATGAATGGACGCCGCCGCGGAACTCGGGAGGAATCCC
GCAAGCAAGAACTAAGGTTCAGCCTGGAGTATGGAGATGAGCAAGCTGAC
GCGAGGTGGGGCCGCCGAACCCGTCTCGCGAGACCATATTCTCAGGCGCG
AACGAGGACAGCGAATAATCCATTTTCCCTTTTCAGCTGCTGACCACAAG
CAGGATTGGCAACCTTACCCGGTTGTGAGGGCCATACATACAAACATAGT
TCTACATACACATACCGCTGAGTTACATATATATGTATGCATATTATACA
ACAACAGTGAACCGTGCACGAATGTACATGTCCCCAAATAAAAATTATAC
CTGGTATATAAACCAATACAAACAGCAGTACTGTACCAGTATATATATAT
GTAATTACCACGGATACAGCTGACCACGAGCAGGTATGGCAACCTTACGC
GGTTGATCCATATTACTCTGATATAAGTAAGCGGTGGCCGTACTTACTAG
CTCTATACATAAATACAGATCATCAGCAATAATGTACCTGTCTGTTGTAC
CAATAAACAAAGCTGAATATCAGGTGTCTGTGAAGCATACTAAATCCAAA
TTCCTTTGTTTTTTCTTGTATGGATGTATTTCCACCCAACTACAGCAGTA
CCCAGTAGTTATGTCGATTTTGTGACAATTTGTACAGAACATCGAGTGTG
ATCTCTCTACGCGGATTTCAGAAATGAATAGCGCCGACTTTTGATATTGC
CCAGGCTGAGACCATCTACAGAAGCGTAAAACGCCCAGGTATCGTTCTGT
GATGACCGTAATTGATTCGCGAGTGTGTGCATCAAGCACGGTGTCTTCCA
GTCGAGGCGTCCGAAGAGGGTAACTCGTTGCCCCGCACAGGCTTTCAACG
TCAACAAAATAGATGATTTTTCAATCGTAGCTCGGTTTCGTGTGCTAATT
CCAGCGGCCATGTGTACCTAACTCCCACATACGATGCTGCTTGCAGTTTC
GTGAACTCGGGGACTTTGTGTACCGTGAGTGGAATGTATTTGGTTGGCTG
AGACAGGCTTTGGTTCACATCCAGACCACAAACGCTCTCGGCCGCCGTCC
TCGACCGTACTCGACGTACTCTCAACCGTTTCGGCCCGGGCGGGAAATAG
AAGCGTCCGTGTGAGCTGGTATGCATGATTTACAAGAGTCCGCTTTAGCA
ACTTGAGCACTCAGCTCAGAAGAACGCGAACCTCAAGCACCGTGCCTCCC
CCGGTGCCTACCACTGTAGCGGGCCCCAAACAATCGGCAGATTCGGAGCA
AATACGAGTGGCGACGATTGCACTCCACACAGAGCAGGAAAAAACACGAA
ATCTTCAGGAGGCCCAGGTCTCTCAACGGCGAACACTTTCATTCCTTGCG
GGTTAGCCATCTTCTCTTGTGGGCTGACCTCAATTTCTGCCATAGCTGCT
ACAGCCTTTGATAAGAGCTGCAAATGGCCCAAATAGCGCCATTTCATTGA
ATCAGACGTTCAACCGCATTTTTTGTAACCGGCAATATTTTGGAGTACAA
AAAGCAAAAAACGGGGATCGGGGAACAATCGCGTATGGTGCACTCTTAAC
TACGATAGTAGTGCCAGAAGATCCGTACGGGTCATGCCGTAACATGGGCC
AATAGTGCAGAAATAAAGAACGTAGATTGTCCTATAAATAGTGGAGAAAA
CTTAGTGCATAGCAGGTTGGTGAAGGGTGGTACACGGGATCAACACCCTT
AATCTTGACAGTTGTATCTCGGTGATATCAATACAGTACAGAGAAAATGG
TGACCACTTAACAAAGAAGTAGCTACTTGTATTAAGAGTTCTATCTCTAG
CAGCTGACAGAAAATTATTTTAGTTGGCGAAGAGATATCTAGTGCAGCAA
TGGTGGTTATTATCGTGTTGAGCATGGGAAACTTGGGCCTGGTAGTGAAG
GGTTATACATGGGATCAGGCACGTCTACAAAGGTGTTGTAACCCTGATGG
GGTTTTTGCACCCAATCAAGTGTAGCCTCCTCTCACCTGAGGGCTACGGG
TTGTCCGGGGCTGACACGTGGAAATAGTTGTCTGGATTAGAACCGTGAAA
AACCATGAACTACTGTATACCGATGTGTACGTTGATAAGGCGTGAAGAAA
TAGCCGCGCATCCAAGCGTACTCGCGGAGGCTTCATGGAGGCTTCGAAGG
TATAAGCGGCGCCAGTCTCGACGACAGGATCCACACCATCAGCATCGTCG
GGCTATCGCTTCCGGTGTCGGGTCCCGATGAAACGCAAGCGCACAGAGAG
ACAGGTTGCCTGGCTTTGGAAACGGAACTGGCGGAATAGCCTCAAGACGG
GAAGTTACGCACAAATATTATCTGCTTGCTCGCTATCTCCGCGAGAGGCT
GTCTTCGAGTGACAAGGACCTTCCTGTTACGATCAAGAAGCTGGGGGGGA
GGGAGACGAGTGAGAGGCATTACGAGTTACCACGTTGTCTTGAATCATGA
CGAGTGCACCACGAGCAACATGTCATGGTATTCAGTTTTCCCCCCGCTTT
GCGCCCTCTCTTGTGCGTGTACACGCACATTTGGGCTGAACGGTCATCGT
AGCGTTCTGCATGGACTGACGAGCGTAGCAACGACGAAAAGAAAGACAAA
CAAGCAGGGACAAGCAAAACAGGAAAGCATCAAGTGGGGCCACAATGATG
GTGCTGACGGGGGTGATAGCGCCGTGCAGGCTAGGGCAGGTACTGTAGAT
GACGAGGTTGTCACACCCCCGATAGTAACGTTTTCCCCGAAAATCGCAAT
AGCACGCCTCAAGTAAAAACACCCCTGTGACATACCGAGTGATGTTTTGT
AAGGAGCAATTACGAGGGGCCGATATCTTGTACCTGTAGCCATACCCTTG
GGGAGTCGTATACCAGCGGGTTATCTCCTTCGCACTTCAGTGTTTTTTAG
GGTAAGAGTGGTGTATCAGCCAGAGGTTCATGTGTTAAGACGTTACTCGG
TCACTAACGCTACAGTAGGACAGTTTGTGCGTTTCTCTTGTTCACAGGTT
TTATGAATTGTTGGGTATCGCCAATACAGTATACAACGCTTTTGGAAATG
CGCAACTGCCCCTCTCGCGTGCCCAACCCTATGCTTCAAATGCTCATTTC
CGCGCCCCCCCTATGGAGACAGCTTAACAGATCCTTATTTATTTTACAAC
CTTCACTGCCCGTCAAACCCGCTTTGATATTCAGCGGTTCATACTCCTTT
CCGTTCAAAACACTAAAGGGCTACTTTTTTACTCCTAACCAAATTCACAT
TTGCCCCCTCGTCGTCTCTGAGATGCAGGAAGCCCGACCCTGGACGCCGG
CCTCCAAGTAACATGGGGCAATAACCCAGCCTACTGGGCGCAGGTCGACG
AACCCACTTCCCCGCGTGGTCGTATCTGGCGTCTGAACATGGTTTGCTGG
CTATCGGTCATCACGACCGTGCCCGCACCCAAACCAGGCCTCTACGCCGC
CTTCTTCAAGATTCGGAAGTACGACATACGCTCTAACCTTCTGAGCTTTT
CCGCCGAGTGGAAGGCAAACGCAGCTGGCACTACAAAACAAGGTTTTTTG
CACACTAATGGCAGTCCCACGAGCGGATCCTTCACCCTGCAAGAGTCTGA
TGCGATTGCTTCGTGGTCTCACCGCAGACTGTATACCTCCGTTGATCCTG
GAGCTTGGATGCTTTTGCATGTAGGGAACGTCGTTGTGCGACGTCGGGCC
CACGCCTTGGATGGGGGTACGGAGGCAGACGATGATGGGCTAGAGGTGGT
TCTGAGCTTCGGAGGCGATAATCCGTACTGGTGTTCAAACCTCGACGTCG
ATTTCGCCGCCATCGCTCCACTCCGCCTTTGCTGGGACATCACACGCGTG
ATCTGGATAGGTCAAATGAAGGGGAAAAGTAGTGTCGACGGTGTAACGCA
GGGTGCAAACAATGGCGACGAAGAGGGTGTGCACCCTCAAGGCGGGATAA
GCCCTTTGTACCAGGTTTCTAAGAGGCTGATCAGACTCATCCTGGAGTTT
TCGCAGCCGACTCTGACCCAGGCGTTTGACGGCAATTCAAGCGAACCCGA
GGGAGACGAGGGCAAAGATGACAGCGGGACCTGGAGGGTATTTTAGCCTT
CTTCGACAACCACAGATATATAGTGTTGTGGAGGAGAAGATAGAAAGGGA
CCACACGATGGTGGCGACGGCAGAGAGGCCTGAAGGGTGTTCTAGCCTGC
TTCGTTGGCTGTTCTCGTGACTTGTGTCCATTCGTAAGTCTTGAACTAGC
GACACGTCTTCCAAGTCACGGGACTACAGCACGAAGCAAGCGAAATGTGA
ATGCTTAGGACCTATCATAGTAGTGATAGACAGTGTGGCTAAGGGTCTGT
GTCGCGAGCTAGATTTGGGCAATTGCACAAATCACATTTTGGTTTCGTGT
GTAGGTATTGAGCCTATCACCTAGGCGAGAGATGATCGAAGCGATGTCTT
CATCTATCCGGACGAAAGGCCGTTATAATATTTTTCGTTATTCCCTCGCA
TCGTGATAGGCAACATTTGCGTTGTGTCGTGTAAATTGCCAAAGCCTTCG
AGATAATATATGTACTGTACGCACTTTCCGAAAGTGAGTACTCCGTTCCT
TATAAAACGTACGTATCATGAATCATTTCATATGTAGTACCGTAGAGCTA
TTTATAGTATAACAGTTATCGAAGATATTGCGACGTGGGTCAAGCCGCTT
TTCGTGTTTTCTCGAAATTTTTTAAAGAGTTTTTATTTTCTGTTTTACGC
CGGACTAGAGAACGGACAGTTGGGACGGTTCTGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig108:494859..500593-

>mRNA_A-nodosum_M_contig108.39.1 ID=mRNA_A-nodosum_M_contig108.39.1|Name=mRNA_A-nodosum_M_contig108.39.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at A-nodosum_M_contig108:494859..500593- (Ascophyllum nodosum dioecious)
ATGCAGCGGCTGCACCCCATGCCCACGAACGATGCATGGCCGCCGGCCAG
CAAGATTGCAAATGTACGAGACAACTTGCTCTATCTAGGAAGCCCGACCC
TGGACGCCGGCCTCCAAGTAACATGGGGCAATAACCCAGCCTACTGGGCG
CAGGTCGACGAACCCACTTCCCCGCGTGGTCGTATCTGGCGTCTGAACAT
GGTTTGCTGGCTATCGGTCATCACGACCGTGCCCGCACCCAAACCAGGCC
TCTACGCCGCCTTCTTCAAGATTCGGAAGTACGACATACGCTCTAACCTT
CTGAGCTTTTCCGCCGAGTGGAAGGCAAACGCAGCTGGCACTACAAAACA
AGGTTTTTTGCACACTAATGGCAGTCCCACGAGCGGATCCTTCACCCTGC
AAGAGTCTGATGCGATTGCTTCGTGGTCTCACCGCAGACTGTATACCTCC
GTTGATCCTGGAGCTTGGATGCTTTTGCATGTAGGGAACGTCGTTGTGCG
ACGTCGGGCCCACGCCTTGGATGGGGGTACGGAGGCAGACGATGATGGGC
TAGAGGTGGTTCTGAGCTTCGGAGGCGATAATCCGTACTGGTGTTCAAAC
CTCGACGTCGATTTCGCCGCCATCGCTCCACTCCGCCTTTGCTGGGACAT
CACACGCGTGATCTGGATAGGTCAAATGAAGGGGAAAAGTAGTGTCGACG
GTGTAACGCAGGGTGCAAACAATGGCGACGAAGAGGGTGTGCACCCTCAA
GGCGGGATAAGCCCTTTGTACCAGGTTTCTAAGAGGCTGATCAGACTCAT
CCTGGAGTTTTCGCAGCCGACTCTGACCCAGGCGTTTGACGGCAATTCAA
GCGAACCCGAGGGAGACGAGGGCAAAGATGACAGCGGGACCTGGAGGGTA
TTTTAG
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