mRNA_A-nodosum_M_contig108.38.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig108.38.1
Unique NamemRNA_A-nodosum_M_contig108.38.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig108contigA-nodosum_M_contig108:419659..421395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size283
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866464.1880407-CDS-A-nodosum_M_contig108:419658..4197051680866464.1880407-CDS-A-nodosum_M_contig108:419658..419705Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 419659..419705 +
1680866464.1992886-CDS-A-nodosum_M_contig108:421161..4213931680866464.1992886-CDS-A-nodosum_M_contig108:421161..421393Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 421162..421393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig108.38.1prot_A-nodosum_M_contig108.38.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig108 419659..421393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig108.38.1

>prot_A-nodosum_M_contig108.38.1 ID=prot_A-nodosum_M_contig108.38.1|Name=mRNA_A-nodosum_M_contig108.38.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
SIGNSTLELSTRCVRIEWGKSGSCRSSEGPRCLLPGKVESDGRERSRIEG
AVAAGRVEGQDATPESVSAEEDFAGEEPEPSTGDSQDGLAEDT
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mRNA from alignment at A-nodosum_M_contig108:419659..421395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig108.38.1 ID=mRNA_A-nodosum_M_contig108.38.1|Name=mRNA_A-nodosum_M_contig108.38.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1737bp|location=Sequence derived from alignment at A-nodosum_M_contig108:419659..421395+ (Ascophyllum nodosum dioecious)
AGTATTGGGAACTCAACACTGGAGTTAAGTACAAGATGCGTACGTATGTG
AGGAGTCGAGACGCCGATTATATGCGTATTACACATGTGATGAAAGTTTA
GAAGTGCCCCTCAGCTCAGTGTTACTCTAGTACTGGTACTCTGCAGGAAC
CTAGCCCGAGACACGTGAACGAAAATGAACAAAATAACAAACTGACCCAA
CCGTACAGATCCTGCAACCCCGATCAGCAGCGTGAGGCCCCTGATCTCCT
AACCTTTAGTGACTGCGGCAGGACCTCGGTTGCTGTGTTCGTCTGTCTTG
ATATGGTAAAAACCACTCGTGAAGGTCAGAATCTCAGACGGAGTCCTCGT
TTAACAAGCTCCGCCATGCAGCCCTAGGCTTGGGGAAGAAGAGCAGGTTG
TATTCGCATCAATCCTGCTCATCAGGACCAATGGAGGAAGATACTTCAGA
GACAGTAGTAGATCCCACGGGGCGACCCAACTCGAAATTCATAGTTCCTT
CCCAACAGCCGGCATTCAGTCTCGTAGCATTTGCAGCTACTGAAGACCCT
GGTAGACAGCTTCCCAGTTCTGCCATCGCTGTAAAAAAGAAAGTTGCGTA
CACTAAATCTACATTTATTATCGTATCCTCGTCTGGTACTGCATTCAAGT
ATATACAACATTTCTCCGCACCCGCCCAAGAGTCCGCACCTGCCCGAGCA
ACTAAAGAGCCGAGCGCTCCTTCCGCCGCGAGCACCAATCCTCGAAATGG
ATGGTGCATCAGCTGCTGCTAGGGGTCCGCCAGGGAATCATCGCGGAAGC
GACGGTCCGACAGAGAACCCTCGCGGAAGTGACGGTCCAACAGGGAATGC
CCGCGGAAGCGGTAGCATGACAAGAGATCTTCGGGCAGTCAGTGCGCTCG
GAGAGGCACTTTGCACAAGAGGTACTTCAATATCGGGAGGGAATCTTCGC
GGAAGCGATAGTTCAAGATTGCTCGCATCCAGTGCGCTTGGAGAAGCACA
CTCGGCACAAGACGTACTTCAACGTCGGAAGCGAATCTTCGCGGAAACAA
TATCATAGTTCAAGATTGCTCGGGACAGCCAGTGCGCTCGAAAAGGCATT
CAGCGCAAGAGGTACTTCAACGTCGGAAAGGAATCTTCGCGGAAGCGATA
GTTCAAGGTTGCTCGGGACAGCCAGTGCGCTCCGTGAGGCACTTGGCGGA
AGAAGCACTCCCACATCGGAAGGGAATCCTCGCGGAAGCGATGGTCCATC
GAGGGAGGGGACTCCCACCAGAGGTCTGCGTTGGAGATCAACTCTTCGCG
AAGTTCGGAGGGACCAAGATTTCCCTCAAGCAGCTCTTTTTTCGAATAGA
GACCCGTCTCGAGTTCGCCCAATCAATGAAAATGTTGTCGTACTGCTCCC
ACAAAGTTATCATGCTCTTCCGCAAGACACGTCAGTTATCTTGGTCACAG
ATCCCATGATTTCCCCTCGTTCCCGCATATTCTCTCTGGTGGTTCCCTGC
CAGCGAGTGGGGCAAATCTGGTTCATGCAGATCCTCTGAAGGCCCAAGAT
GTTTACTTCCTGGAAAGGTCGAGTCAGATGGGAGAGAGCGAAGTCGGATC
GAAGGTGCTGTAGCAGCCGGAAGGGTCGAGGGACAAGATGCCACTCCTGA
ATCCGTTTCGGCCGAGGAGGACTTCGCCGGTGAGGAGCCTGAGCCATCTA
CGGGAGATTCCCAGGACGGGCTAGCTGAAGACACGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig108:419659..421395+

>mRNA_A-nodosum_M_contig108.38.1 ID=mRNA_A-nodosum_M_contig108.38.1|Name=mRNA_A-nodosum_M_contig108.38.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig108:419659..421395+ (Ascophyllum nodosum dioecious)
AGTATTGGGAACTCAACACTGGAGTTAAGTACAAGATGCGTACGTATCGA
GTGGGGCAAATCTGGTTCATGCAGATCCTCTGAAGGCCCAAGATGTTTAC
TTCCTGGAAAGGTCGAGTCAGATGGGAGAGAGCGAAGTCGGATCGAAGGT
GCTGTAGCAGCCGGAAGGGTCGAGGGACAAGATGCCACTCCTGAATCCGT
TTCGGCCGAGGAGGACTTCGCCGGTGAGGAGCCTGAGCCATCTACGGGAG
ATTCCCAGGACGGGCTAGCTGAAGACACG
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