mRNA_A-nodosum_M_contig108.37.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig108.37.1
Unique NamemRNA_A-nodosum_M_contig108.37.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig108contigA-nodosum_M_contig108:410230..410645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FLF6
PFAMsMULE
Model size245
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.15e-08
EggNOG OGs2CMGX@1|root,2QQB8@2759|Eukaryota
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866466.162291-CDS-A-nodosum_M_contig108:410229..4104421680866466.162291-CDS-A-nodosum_M_contig108:410229..410442Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 410230..410442 -
1680866466.1739838-CDS-A-nodosum_M_contig108:410615..4106451680866466.1739838-CDS-A-nodosum_M_contig108:410615..410645Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 410616..410645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig108.37.1prot_A-nodosum_M_contig108.37.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig108 410230..410645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig108.37.1

>prot_A-nodosum_M_contig108.37.1 ID=prot_A-nodosum_M_contig108.37.1|Name=mRNA_A-nodosum_M_contig108.37.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=81bp
RVGASSYATNELIAESRASAAYATVTLSSGADAASFLESMAQQADDHVDV
CCQIPDEAVAADLTDTTMFGTTSLLSFSGLV
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mRNA from alignment at A-nodosum_M_contig108:410230..410645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig108.37.1 ID=mRNA_A-nodosum_M_contig108.37.1|Name=mRNA_A-nodosum_M_contig108.37.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=416bp|location=Sequence derived from alignment at A-nodosum_M_contig108:410230..410645- (Ascophyllum nodosum dioecious)
CGAGTTGGCGCGAGCTCCTACGCAACAAATGTGAGGTTGAAAACAACATG
TTAATAATGTGCGTGTCGTGTTTTTAACTGGATTAAGCGAACACGACAGC
CGGTGAAGGTTGGGTCCATCCGAAGCATCCACTGTTTTTTTTACGTCTGT
GTCCTGATTTCTTCCTTTCAAACCCCGTCTATGTTGGCAATCGTTGCTCT
CAGGAACTGATTGCCGAAAGTCGCGCGAGTGCCGCCTACGCCACTGTCAC
GCTGTCGTCGGGTGCAGACGCCGCGAGCTTCCTCGAAAGCATGGCACAGC
AGGCAGACGACCACGTAGACGTGTGTTGTCAGATCCCGGACGAGGCTGTG
GCAGCTGATTTGACTGACACGACCATGTTCGGAACAACATCGTTGCTCTC
GTTTTCTGGGCTCGTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig108:410230..410645-

>mRNA_A-nodosum_M_contig108.37.1 ID=mRNA_A-nodosum_M_contig108.37.1|Name=mRNA_A-nodosum_M_contig108.37.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=243bp|location=Sequence derived from alignment at A-nodosum_M_contig108:410230..410645- (Ascophyllum nodosum dioecious)
CGAGTTGGCGCGAGCTCCTACGCAACAAATGAACTGATTGCCGAAAGTCG
CGCGAGTGCCGCCTACGCCACTGTCACGCTGTCGTCGGGTGCAGACGCCG
CGAGCTTCCTCGAAAGCATGGCACAGCAGGCAGACGACCACGTAGACGTG
TGTTGTCAGATCCCGGACGAGGCTGTGGCAGCTGATTTGACTGACACGAC
CATGTTCGGAACAACATCGTTGCTCTCGTTTTCTGGGCTCGTT
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