mRNA_A-nodosum_M_contig108.29.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig108.29.1 vs. uniprot
Match: A0A6H5L7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J9_9PHAE) HSP 1 Score: 276 bits (705), Expect = 1.980e-82 Identity = 146/306 (47.71%), Postives = 205/306 (66.99%), Query Frame = 1
Query: 85 PDPETLEARCGLLTMWEIQAKNLAAQLRSGIILTTLFVLAFFLWLRLNEAWTTGDTIYFLVLSLLTIGYGDIVVDSGWYDRLADSFMILLGLWMLAWWGNYVLRASSNLRFRPV--FRPPPDFDMEASLRRIRRGLIIRLLLVTAVVAVGSFVFMFGEDKSFATSLYWAIVTSSTVGYGDVVPTTDAMKWFTVFYSIVATGSVLEALRRVGSYPFRTWNVRASARVINQFRKPKSEADPSEAMALANTAVREVLKISPREEQGGIT-RSDFTLAMLLMLDRVSYEHYQQAARVYDNLRLQSSNGVL 993
P ++L +R GLL + EI++K+L + +GII+T L++L LWL ++++W+ DT+YF+ S+LTIGYGD+VV+ DRL DS +I LGL+ + W + S+ R R V P +FD E S+R+ R LI RL+++ V+ +G FM GE SF TS YW IVTSST+GYGDVVPT+ AMKWFT FYSI ATG++LEALR G++PF W +RA A+V QF + + A + A +LA++AV E+L I P E GG+ RSD L+MLL+L+RVSY+ QQ +R+YDNL+ + L
Sbjct: 47 PTQDSLASRYGLLDVAEIRSKDLMTVVVNGIIMTLLYLLLGALWLMISDSWSFTDTVYFMSTSMLTIGYGDVVVNERGTDRLLDSVLIALGLFSITIWAACASQWLSSARSRRVEGHGPVAEFDAELSIRKYRWKLIHRLVVLLVVIVIGVVAFMLGEGTSFPTSFYWVIVTSSTIGYGDVVPTSPAMKWFTSFYSIAATGAMLEALRFAGTFPFTVWTLRAEAKVFGQFSRRNTAAGGAAAASLADSAVTELLGIPPEERPGGVLGRSDVALSMLLLLNRVSYDDVQQVSRIYDNLKADRDDAAL 352
BLAST of mRNA_A-nodosum_M_contig108.29.1 vs. uniprot
Match: D7G7M8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M8_ECTSI) HSP 1 Score: 230 bits (586), Expect = 7.520e-66 Identity = 122/265 (46.04%), Postives = 172/265 (64.91%), Query Frame = 1
Query: 85 PDPETLEARCGLLTMWEIQAKNLAAQLRSGIILTTLFVLAFFLWLRLNEAWTTGDTIYFLVLSLLTIGYGDIVVDSGWYDRLADSFMILLGLWMLAWWGNYVLRASSNLRFRPV--FRPPPDFDMEASLRRIRRGLIIRLLLVTAVVAVGSFVFMFGEDKSFATSLYWAIVTSSTVGYGDVVPTTDAMKWFTVFYSIVATGSVLEALRRVGSYPFRTWNVRASARVINQFRKPKSEADPSEAMALANTAVREVLKISPREEQGGI 873
P+ ++L +R GLL + EI++K+L + +GI +T L++L LWL +++AW+ +T+YF+ S+LTIGYGD+VV DR DS +I+LGL+ + W + S++R R V P +FD E S+R+ R LI RL+++ V VG FM GE F TS YW IVTSST+GYGDVVPT+ AMKWFT FYSI ATG++LE LR G++PF W +RA A+V QF + + A + A +LA A+ E+L I P E GG+
Sbjct: 47 PEHDSLASRYGLLDVAEIRSKDLMTVVVNGIGMTLLYLLLGGLWLMISDAWSFTETVYFMTTSMLTIGYGDVVVQGA--DRFLDSLLIVLGLFSITIWAACASQWLSSVRSRRVEGHGPVAEFDAELSIRKYRWKLIHRLVILLVVFVVGVVAFMLGEGAPFTTSFYWVIVTSSTIGYGDVVPTSPAMKWFTSFYSIAATGAMLETLRFAGTFPFTVWTLRAEAKVFGQFSRSDTAAGRAAAASLAECAITELLGIPPEERPGGV 309
BLAST of mRNA_A-nodosum_M_contig108.29.1 vs. uniprot
Match: A0A7S3UR31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UR31_HETAK) HSP 1 Score: 119 bits (299), Expect = 1.980e-25 Identity = 74/258 (28.68%), Postives = 129/258 (50.00%), Query Frame = 1
Query: 229 EAWTTGDTIYFLVLSLLTIGYGDIVVDSGWYDRLADSFMILLGLWMLAWWGNYVLRASSNLRFRPV--FRPPPDFDM---EASLR-------RIRRGLIIRLLLVTAVVAVGSFVFMFGEDKSFATSLYWAIVTSSTVGYGDVVPTTDAMKWFTVFYSIVATGSVLEALRRVGSYPFRTWNVRASARVINQFRKPKSEADPSEAMALANTAVREVLKISPREEQGGITRSDFTLAMLLMLDRVSYEHYQQAARVYDNL 966
E W + +YF V + L+IGYGD+ + G + + F +L G + V+ ++ R + +R +F EA+ + R+ L++ ++ VV VG+ V ED ++ S YW+ VT +T GYGD VPTT A+KWFT FYS++ S+ A+ + +P + A R++ QF + +P + + E ++S R+ + R++F L MLL+LD+V+ ++ + +D L
Sbjct: 86 EGWGFTNAVYFTVNTFLSIGYGDMTITRG-SEMMFTGFFVLCGAGFIGSAIGVVVANETSTRDEDLHKYRQTKEFHENGGEANFQVHKWERQYARKNLLLSFFVILLVVLVGTLVMGIFEDWTYVESFYWSTVTITTTGYGDYVPTTIALKWFTTFYSLIGVISLARAMSYIAQFPILARRIEAERRILKQFA---TSTNPQQVLGAIGFGA-EFEELSIRKNPDSVERAEFILNMLLLLDKVTATDIRECNKQFDLL 338
BLAST of mRNA_A-nodosum_M_contig108.29.1 vs. uniprot
Match: A0A7S2HDP2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDP2_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.480e-19 Identity = 75/268 (27.99%), Postives = 124/268 (46.27%), Query Frame = 1
Query: 229 EAWTTGDTIYFLVLSLLTIGYGDIVVDSGWYDRLADSFMILLGLWMLAWWGNYVLRASSNLRFRPVFRPPPDFDMEAS------------------------LRRIRRGLIIRLLLVTAVVAVGSFVFMFGEDKSFATSLYWAIVTSSTVGYGDVVPTTDAMKWFTVFYSIVATGSVLEALRRVGSYPFRTWNVRASARVINQFRKPKSEADPSEAMALANTAVREVLKISPREEQGGITRSDFTLAMLLMLDRVSYEHYQQAARVYD 960
E W +T+Y++V +L T+GYGDIV +S R++ + + +G+ + + V+ S L V PP+ ++ L +R+ L +LV A + VG+ ED + YW+ VT +TVG+GDV PT D KWF++ Y I T V ++ + S P +R V++Q+ SEA + + A+T R + R+ + I++S+F + +LL+LD V R YD
Sbjct: 36 EKWNFTNTMYYIVSTLTTVGYGDIVSNSTPVSRISTALFVFIGVSFIGFAFGVVV--SQLLDSADVDLDPPNQNLTLQQSMSDKGSMSFCGMRIPMVFYSYELSTMRKKLFDSWILVLATLLVGTLCMSILEDWPIDRAFYWSCVTVTTVGFGDVTPTNDITKWFSIGYMIFGTVCVARSVTFIASIPLTLRKLRMRQDVMSQWHN--SEA--IQTLLKADTLSR----LGLRDHEKFISKSEFVIHLLLLLDSVKERDINICCRHYD 293
BLAST of mRNA_A-nodosum_M_contig108.29.1 vs. uniprot
Match: A0A813JDK2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JDK2_POLGL) HSP 1 Score: 94.7 bits (234), Expect = 3.450e-17 Identity = 77/287 (26.83%), Postives = 130/287 (45.30%), Query Frame = 1
Query: 211 LWLRLNEAWTTGDTIYFLVLSLLTIGYGDIVVDSGW-YDRLADSFMILLGLWMLAWWGNYVLRASSNLRFRPVFRP----------------PPDFDMEASLRRIRRGLIIRLLLVTAVVAVGSFVFMFGEDKSFATSLYWAIVTSSTVGYGDVVPTTDAMKWFTVFYSIVATGSVLEALRRVGSYPFRTWNVRASARVINQF------RKPKSEADPSEAMALANTAVREVLKISPREEQGGITRSDFTLAMLLMLDRVSYEHYQQAARVYDNLRLQSSNGVLPMR 1002
+W R W+ D+IYF+V+++ T+GYGD +G D++ + +G+ + +L S +R FR FD++ L+ + + L L+ VV VGS M E FA S Y+A VT +TVGYGD +PT DA K F + +V+ G + ++ + + PF + ++V++QF ++ + + E L N + E K +P ++R++F L L ++S + +D L S GVL R
Sbjct: 58 IWGRFAFDWSIIDSIYFVVVTMTTVGYGDKTFGTGGAMDQIVGGIYVFIGVAFIGVAAGIILDHVS-VRAEKQFRKLTAEATRVMAEGGDHHTTQFDLDKELKILYQNLYKDAGLIALVVLVGSVCMMALEGWEFAPSFYFACVTMTTVGYGDRIPTNDASKLFVCCFILVSFGVISVSISNLAAVPFEVRKLTNISKVLSQFGETLDAQELTALCESDEVRKLRNRSQIERFKYNPH-----VSRAEFILWQLQKQGKISDDDLIPCTHSFDALDADCS-GVLNQR 337
BLAST of mRNA_A-nodosum_M_contig108.29.1 vs. uniprot
Match: A0A7S4A7D3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7D3_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.210e-16 Identity = 88/344 (25.58%), Postives = 147/344 (42.73%), Query Frame = 1
Query: 4 RRSERNYLSSMFMAPAVRSQPAAIRDEPDPETLEARCGLLTMWEIQAKNLAAQLRSGIILTTLFVLAFFL-------WLRLNEAWTTGDTIYFLVLSLLTIGYGDI-----VVDSGWYDRLADSFMILLGLWMLAWWGNYVLRAS-----------SNLRFRPVFRPPPDFDMEASLRRIRRGLIIRLLLVTAVVAVGSFVFMFGEDKSFATSLYWAIVTSSTVGYGDVVPTTDAMKWFTVFYSIVATGSVLEALRRVGSYPFRTWNVRASARVINQFRKPKSEADPSEAMALANTAVREVLKISPREEQGGITRSDFTLAMLLMLDRVSYEHYQQAARVYDNL 966
RR ERN L PA D P P R L I +L A RS L VLA+F+ +L E +T D +YF V+++ T+GYGD+ +VD+ D+L + +LLG+ ++ VL A S + R P + +L + ++ + V+ G+ +F E S T+ YW V+ +TVGYGDV P T A K F + +V T + ++L + P R +V+ Q+ + +E + A++ + ++++F L+MLL LD++ + + + +D+L
Sbjct: 4 RRPERNALLDNAQPPA---------DPPTP----TRPQLNHFHSISISDLDASDRSPQCYAALLVLAYFVLGVLYYSYLAAPEKFTLIDALYFTVVTITTVGYGDVNGDYKLVDTS-QDKLFTALFVLLGVGIIGAAVGVVLSAILDREDELAERLSRQQTTETVRRRPSLLGKKALSPAQAKCVVSAAQLVLVLLGGTLIFERLEHVSLLTAFYWCCVSVTTVGYGDVAPETFAGKAFACVFLLVGTVLMAKSLGDIAGLPLEARRKRLEKKVLEQYGDHLDGEEFAEILRYAHSQ-------GLCDSATSCSKTEFVLSMLLKLDKIDKDDIRPCVQAFDHL 326
BLAST of mRNA_A-nodosum_M_contig108.29.1 vs. uniprot
Match: A0A813EIU9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EIU9_POLGL) HSP 1 Score: 90.1 bits (222), Expect = 6.070e-16 Identity = 60/229 (26.20%), Postives = 108/229 (47.16%), Query Frame = 1
Query: 127 MWEIQAKNLAAQLRSGIILTTLFVLAFFLWLRLNEAWTTGDTIYFLVLSLLTIGYGDI-VVDSGWYDRLADSFMILLGLWMLAWWGNYVL-------RASSNLRFRPVFRPPPD-------FDMEASLRRIRRGLIIRLLLVTAVVAVGSFVFMFGEDKSFATSLYWAIVTSSTVGYGDVVPTTDAMKWFTVFYSIVATGSVLEALRRVGSYPFRTWNVRASARVINQF 768
M E++A QL + I L ++ L F + L+ W+ D+IYF+V+++ T+GYGD GW ++ + +G+ + +L A+ + + D F ++ + ++ R L + +AVGS M+ E F + Y+ VT +TVGYGD+ + A K F +F+ +V+ G + A+ VG P +R ++V++QF
Sbjct: 1 MEELEAAEWRRQLLTSIALVIIYWLVGFAYGHLHADWSVADSIYFVVVTMTTVGYGDFSFTGQGWATKIFGGIYVFVGVAFIGAAAGVILDAITEKAEAAKAKLMKEAKQEIMDNAGAEYVFLVDKEIEKLHRRTARYALYILINLAVGSASMMYLEGWEFPDAFYFCCVTMTTVGYGDLEAKSSASKTFVIFFILVSFGILAAAISSVGGLPMEKRRLRNISKVLHQF 229
BLAST of mRNA_A-nodosum_M_contig108.29.1 vs. uniprot
Match: A0A7S4B6I4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B6I4_CHRCT) HSP 1 Score: 92.0 bits (227), Expect = 8.360e-16 Identity = 77/276 (27.90%), Postives = 124/276 (44.93%), Query Frame = 1
Query: 235 WTTGDTIYFLVLSLLTIGYGDIV-VDSGWYDRLADSFMILLGLWMLAWWGNYVLRASSNLRFRPVFR--------------------------PPPDFDMEASLRRIRRGLIIRLLLVTAVVAVGSFVFMFGEDKSFATSLYWAIVTSSTVGYGDVVPTTDAMKWFTVFYSIVATGSVLEALRRVGSYPFRTWNVRASARVINQFRKPKSEADPSEAMALANTAVREVLKISPREEQGGITRSDFTLAMLLMLDRVSYEHYQQAARVYDNLRLQSS 981
W+ D++YF++++L ++GYGD+V D+ RL ILLG+ ++ ++ N+ P+ R PP D + R L LL V+ ++ VG+ F E +LY+++VT STVGYGD P+T+A K F Y++V V +L + + P V+ Q+ E D E L A L++S E G ++S FTLAML+ D+V+ E + R ++ L + S
Sbjct: 208 WSLLDSLYFVIVTLTSVGYGDLVPADAS--VRLFTVGYILLGVGIIGTVLGELVSTMLNVDATPMGRIIRWLSGFGGQNETGDEKSEGTGGEEPPTDAASLLASGDARARLTSSLLAVSGMIGVGTVSFAKLEGLDLVDALYYSVVTVSTVGYGDFTPSTEAGKAFACVYALVGAILVARSLGSIAALPLEARRRAMQRSVLEQYG---GELDAEELDDLV--AATSALQVS--EADGSCSKSAFTLAMLVRQDKVTEEDIAECLRTFEQLDVDGS 474
BLAST of mRNA_A-nodosum_M_contig108.29.1 vs. uniprot
Match: A0A813DJI6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DJI6_POLGL) HSP 1 Score: 90.9 bits (224), Expect = 2.900e-15 Identity = 69/279 (24.73%), Postives = 128/279 (45.88%), Query Frame = 1
Query: 127 MWEIQAKNLAAQLRSGIILTTLFVLAFFLWLRLNEAWTTGDTIYFLVLSLLTIGYGDI-VVDSGWYDRLADSFMILLGLWMLAWWGNYVL-------RASSNLRFRPVFRPPPD-------FDMEASLRRIRRGLIIRLLLVTAVVAVGSFVFMFGEDKSFATSLYWAIVTSSTVGYGDVVPTTDAMKWFTVFYSIVATGSVLEALRRVGSYPFRTWNVRASARVINQFRKPKSEADPSEAMALANTAVREVLKISPREEQGG----ITRSDFTLAMLL 906
M E++A QL + I L ++ L F + L+ W+ D+IYF+V+++ T+GYGD GW ++ + +G+ + +L A+ + + D F ++ + ++ R L + +AVGS M+ E F + Y+ VT +TVGYGD+ + A K F +F+ +V+ G + A+ VG P +R ++V++QF + D E A+ ++ + L+ + G + RS+F + L+
Sbjct: 1 MEELEAAEWRRQLLTSIALVIIYWLVGFAYGHLHADWSVADSIYFVVVTMTTVGYGDFSFTGQGWATKIFGGIYVFVGVAFIGAAAGVILDAITEKAEAAKAKLMKEAKQEIMDNAGAEYVFLVDKEIEKLHRRTARYALYILINLAVGSASMMYLEGWEFPDAFYFCCVTMTTVGYGDLEAKSSASKTFVIFFILVSFGILAAAISSVGGLPMEKRRLRNISKVLHQFG---ASIDLEEIKAMCSSEEIQQLRTAKMVALGPGKPYVDRSEFVIWQLI 276
BLAST of mRNA_A-nodosum_M_contig108.29.1 vs. uniprot
Match: F0YJY1_AURAN (Ion_trans_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJY1_AURAN) HSP 1 Score: 78.2 bits (191), Expect = 4.230e-13 Identity = 49/160 (30.63%), Postives = 87/160 (54.37%), Query Frame = 1
Query: 502 LVTAVVAVGSFVFMFGEDKSFATSLYWAIVTSSTVGYGDVVPTTDAMKWFTVFYSIVATGSVLEALRRVGSYPFRTWNVRASARVINQFRKPKSEADPSEAMALANTAVREVLKISPREEQGGITRSDFTLAMLLMLDRVSYEHYQQAARVYDNLRLQSS 981
+V ++A+G+ + F ED + + YW V+ +TVGYGDV P+T K F +F+ + G + +A+ V P R V+ Q+ + + DP E + T+ R++ + + G ++++F L+MLL LDRV+ ++ ARV+D+L + S
Sbjct: 1 MVCGLLALGTVCYKFIEDTTVTVAFYWTAVSVTTVGYGDVFPSTRGGKIFAMFFLLGGCGVMAKAVGDVAGLPLERRKRRNEQAVLAQYGE---DLDPDEFHEIL-TSFRDLGLAAASD--GSCSKTEFVLSMLLKLDRVNQHDIRRCARVFDDLDIDKS 154 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig108.29.1 >prot_A-nodosum_M_contig108.29.1 ID=prot_A-nodosum_M_contig108.29.1|Name=mRNA_A-nodosum_M_contig108.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=336bp MFMAPAVRSQPAAIRDEPDPETLEARCGLLTMWEIQAKNLAAQLRSGIILback to top mRNA from alignment at A-nodosum_M_contig108:278985..291811+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig108.29.1 ID=mRNA_A-nodosum_M_contig108.29.1|Name=mRNA_A-nodosum_M_contig108.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=12827bp|location=Sequence derived from alignment at A-nodosum_M_contig108:278985..291811+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig108:278985..291811+ >mRNA_A-nodosum_M_contig108.29.1 ID=mRNA_A-nodosum_M_contig108.29.1|Name=mRNA_A-nodosum_M_contig108.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at A-nodosum_M_contig108:278985..291811+ (Ascophyllum nodosum dioecious)back to top |