mRNA_A-nodosum_M_contig108.2.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig108.2.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE) HSP 1 Score: 530 bits (1366), Expect = 1.070e-171 Identity = 309/704 (43.89%), Postives = 405/704 (57.53%), Query Frame = 1
Query: 1 LRVGTLNVNGVRGKQVDLRYLLENRRIGCLALQETLLRATDWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYPVGRSSPWSIFVRCTGTQLAQPWIVASVYVPSGKSEGATPMKKIQEQVKALREEFPDDAMAIMGDWNRTRCQVARFVRAVDPEFEVLEPVAGGRVDTRGTRRR-SDRTIDHIAVRMVG-RATKTAPKVLRDVDISDHYPVVGTIACPKGDGEGGTQESVRTKTTT------------------------PRRKIDKERQVVA--------------------------DAMAERFVETCHRVAEESGLTATPRTPGPEPLKKRIVQRIKARTKAYIQAMKTTPSTDTSNGAWAVYEARKKEAMAEVEKDNRAKWKRRIQKASEHLQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEE--PTPMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSTRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGFDKGAP 1950
L+V TLN+NGV+ K++ L+ +L RI C+ALQET L TDW LN+PGY +A GERT+STRG A+LL VG+SSPW FVRC G G P++ ++ Q++ LR ++P+D++ +MGD+NR R +V ++ V E + G D GTR S R IDHI + + T AP+VLR VDISDHYPVV T + D G V T PR + + ++ + A DA A R VE H+VA E G T T LK +I + I R + Y A + ++ + AW Y + +A V KD R W + + ASE L+++P+ W + S +AGW + G+QPV+H S +LLT ISAAWR HY RLAAD TGNS+ D+W W PQR+H+ LD I EM+EAL RI+R+K+PG DG+PAD L+LA EE +PMG +L +LN +WK+ IP+ R STVV IPKKGD+TDM N+RGISLM T LKVLV+++STRLN AFE+ +FS++QAGFR +EECVTQ+ACLLEI +RRK Y++FVDLKKAYDTVPQEAL AKL FYGVRG L FIRALY+ S+I VR G +S+ L RG +G P
Sbjct: 33 LKVATLNINGVKSKKIQLQRVLAMYRINCIALQETTLTVTDWALNVPGYRTFAVYGERTSSTRGAAILLRNKMGAQTVGKSSPWHTFVRCYGL-------------------GKVPLRTVRNQMRDLRVKYPNDSIILMGDFNRLRPRVEQWFNCAYESIRVWE-LTGKDADL-GTRDHGSKRVIDHIMTSLAHPQDTLRAPRVLRKVDISDHYPVVSTFRSDRADASTGDSVGVPINARTIQRGERINTGLIPMPGTHWYQESGPRGRANHQKVIHANYWEPLADLIEEGNEELSPEDTTALVDAAASRMVEASHQVARECGQTKDSSTQRAPALKPQIARAIDDRGRLYRAAKRLRKNSPRAKVAWERYHEARMKAERLVRKDRRRAWTKALCTASEQLRSDPKAAWHFMSAVAGWKRKDSSGGLQPVQHPDSRALLTSANDISAAWRTHYQRLAADVTGNSRKSDKWNAWRAAPQRRHMTELDGPILREEMVEALARIKRHKSPGNDGVPADFLELAGGEEGSQSPMGKTVLGMLNLIWKTRVIPTDRRESTVVPIPKKGDMTDMNNHRGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIRALYANSKIAVRTGDLLSDSFSLERGVRQGCP 715
BLAST of mRNA_A-nodosum_M_contig108.2.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO) HSP 1 Score: 251 bits (642), Expect = 2.470e-68 Identity = 205/610 (33.61%), Postives = 294/610 (48.20%), Query Frame = 1
Query: 298 IVASVYVPSGKSEGATPMKKIQEQVKALREEFPDDAMAIMGDWNRTRCQVARFVRA--VDPEFEVLEPV-AGGRVDTRGT-RRRSDRTIDHIAV--RMVGRATKTAPKVLRDV--DISDHYPVVGTIACPKGDGEGGTQE-------SVRT-----------KTTTPRRK---------------------IDKERQVVADAMAERFVETCHRVAEESGLTATPRTP--GPEPLKKRIVQRIKARTKAYIQAMKTTPSTDTSNGAWAVYEARKKEAMAEVEKDNRAKWKRRIQKASEHLQTEP--RNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVTAISAAWRDHYGRLAADPTGNSQSP----DRWTRW-GQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEEPTPMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSTRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVG---GTVSEPADLLRGFDKGAP 1950
I SVY+P+G S+G +++E++ LRE+FP D + + GDWN Q+ +R P+ + + P A RV RGT RR S R IDH ++G + V D D SDH+PV ++ GD SVR+ + TP R + +E + DA A+ FV+ A G + R GP PL++ I+ I R A++ A+ + A Y A + V + R + R I KA + R FWKWA +IA P QPV SG L TE I+A W HY L DP + + W R G P L+ ++ I E+ +AL R+ NKA G DGI A+ LKLA+ +P G +LL ++N +W + +P W +S VVSI KKGD+T M NYRGIS+M +K+L+ V++ RL + + + Q GF EEC Q A + +I RR+ +GLPTY F+DL+KAYDT+P E L +KL+ G+ G L F++ALY S +QV+ G G +S+P + RG +G P
Sbjct: 10 IFISVYLPTG-SQGEPYRCRLREELAQLREKFPRDTIVVGGDWNLDEAQLDALLRRWRCVPDAKTIWPRDASARV--RGTCRRGSCRVIDHFVAWPPVMGPSLSFPHSVFVDYSWDTSDHFPVFASVPRLVGDSFEHPHPPLMLERLSVRSIPKPARGDPPSEWPTPFRDFVTANPFAILAPPNDEPMEGAMSREPDSI-DADADGFVQAVWSTARRVGAVSRTRRKSLGP-PLQRSILGAIARRRHAFL-ALCQEARGPIQSVALDRYIAARLRVKNMVRTNRRRQKARAIDKAINDFRQGGGRRGFWKWARSIAKGHPTQSNRAEQPVHDPTSGVLHTEPGEINACWARHYRELLRDPHPAACRATIYHEAWERRRGGRPPSPALDGINGPIGGGELCKALKRLNNNKASGVDGITAETLKLAIYAPDSPFGKSLLELMNNIWTTKCVPKQWCSSAVVSILKKGDVTVMDNYRGISIMGALIKLLMTVVTQRLQDVCQTNKLIRRWQGGFMPGEECPLQVASIFDIAGRRQALGLPTYAGFIDLRKAYDTIPHELLFSKLEANGITGHMLSFLKALYRDSTVQVKTGEAPGILSDPIPIERGLRQGCP 613
BLAST of mRNA_A-nodosum_M_contig108.2.1 vs. uniprot
Match: A0A1R1X7T5_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X7T5_9FUNG) HSP 1 Score: 248 bits (632), Expect = 1.770e-66 Identity = 197/670 (29.40%), Postives = 315/670 (47.01%), Query Frame = 1
Query: 1 LRVGTLNVNGVRGKQVDLRYLLENRRIGCLALQETLLRATDWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYPVGR--SSPWSIFVRCTGTQLAQPW--IVASVYVPSGKSEGATPMKKIQEQVKALREEFPDDAMAIMGDWNR-TRCQVARFVR-AVDPEFEVLEPVAGGRVD--TRGTRRRSDRTIDHIAVR-MVGRATKTAPKVLRDVDISDHYPVVG--------TIACPKGDGEGGTQESVRTKTTTPRRKIDKERQVVADAMAERFVETCHRVAEESGLTATPRTPGPEPLKKRIVQRIKARTKAYIQAMKTTPSTDTSNGAWAVYEARKKEAMAEVEKDNRAKWKRRIQKASE-HLQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSTRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGFDKGAP 1950
L+V T N+ G GK+ ++ L + + LALQET L A L + GY A RG+A+ + K G + +P + TGT + ++ ++++P + + + + ++ LR + D + + GD+N+ T VA R + + G R++ T G R IDHI+ ++ T KVL+ VD+SDH PV+ + P+ +E + + R E + + + R + AEE + L K ++ R KA+ + + P T T Y K++++ D R K ++KA + L + R+ W W +G R + S + + L+T+ A + W H+ +LA D TGNS+S D+W G D + + E+ +AL NK+PG DGIP+++ KL E EPT P+ + ++N++W S +P S VV IPKKGD+ D NYRGISL+ T KV+ +++ RL K I +K QAGFR +EECV Q+ L E+ +RRK+ GL T++ F+D KAYD VP +AL+ K+ G+ + I ALY ++ VRVGG +S+ + G +G P
Sbjct: 198 LKVMTFNIRGYIGKREEVDLLFQQYQPTILALQETNLNAKSNRLRLQGYQTVESKSHLRAGGRGLAIGVRKG-LGLSISEMTQTPHWMAAEITGTSRGKKMTLLIINIHMPHQTNRRKLVIAALTKYLRKLRIKGRKDKIMLAGDFNKNTDSTVALLNRIGIGLRRATVTNSKGSRMNGATMG------RMIDHISFSGLINNPNYT--KVLKSVDLSDHLPVMAEWNIEALDSPTVPRKINVESIKELGESFVSNNRFAALTEPEFNIEDLTSRLTKGIWESAEEVNAIKIEKISNSTVLSKETIKATNKRRKAFKRLI-GDPRTATE------YSDLKEKSIELCRLDRRNNRKAEVRKACDLMLGNKSRDLWSWLKRFSG---RFRSSLIDGPVYNNDHKLITDTDAKAEVWATHFEKLAKDSTGNSRSADKWKNMGTI--AAVFPECDAPLSWAEICDALKTTPNNKSPGSDGIPSEVWKLVQNEIEPTSPLAKVISKIINRIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKTAGIGSKLYRIIEALYRSPKMCVRVGGKLSKLVEYNCGVRQGCP 846
BLAST of mRNA_A-nodosum_M_contig108.2.1 vs. uniprot
Match: A0A1R1XKG1_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XKG1_9FUNG) HSP 1 Score: 243 bits (619), Expect = 1.040e-64 Identity = 186/670 (27.76%), Postives = 317/670 (47.31%), Query Frame = 1
Query: 4 RVGTLNVNGVRGKQVDLRYLLENRRIGCLALQETLLRATDWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYPVGRSSPWSIFVRCT-------GTQLAQPWIVASVYVPSGKSEGATPMKKIQEQVKALREEFPDDAMAIMGDWNRTRCQVARFVRAVDPEFEVLEPVAGGRVDTRGTRRRSDRTIDHIAVRMVGRATKTAPKVLRDVDISDHYPVVGTIACPKGDGEGGTQESVRTKTTTPRRKIDKERQVVA--------DAMAERFVETCHRVAEESGLTATPRTPGPEPLKKRIVQRIKARTKAYIQAMKTTPSTDTSNGAWAVYEARKKEAMAEVEKDNRAKWKRRIQKASE-HLQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQR--KHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEEPTP---MGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSTRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGFDKGAP 1950
R + NV G++G + L ++LE + + LQET+L I GY RG+ L+ K++ G + + ++ C G + ++ + ++PS +K+I + + + + +MGD N + F + F+ +R + + R IDH+ + ++ K+L+ VD+SDH P+ + + + +K ++ I + D A++ ++ EE+G ++ ++ + ++ I+ R K ++ K + + Y K +A+ +D + K R I+KA + +L+ PR W+W A + G +H +++T+ W DH+ LA D +GNS+ D+W G+ QR ++ E D++I + ++ A+ NKAPG DGIP++L KL V EE P + L+ +L +MW S+ IP + S +V IPKKGD D NYRGISL+ T +K+L +++ +LN K + K QAGFR +EECV+Q+ L E+ +RRK+ G+PT++ F+D KAYD VP EAL++KL + G+ I ALY RI VRVG ++S + RG +G P
Sbjct: 464 RCFSYNVQGIKGIKDQLEFVLEKYQPTLICLQETMLTEKSSRCMIHGYTSVEVKTNIRRGGRGL-LVAVKNDLGIKINEMESFPNWMACEISGKYKDGNKFES--VIVNAHIPSDPKRRKIVVKQISVFCRRKKNKNNKMPILMMGDLNMDTLKSLSFSNRIGIGFQRANVFNS--TGSRMNKGKIGRMIDHLFYCGI-KSKPVFAKILKSVDLSDHLPLFAEWNIQELKPQPKNIKINTSKLLNHKKNIINNNRFAVLANMKDGIDDHAKKIYGNIWKMCEENGYLSSQKSKKFGLFSDKTIKLIEKRRKLFLGYQKGECNLER-------YTTAKNDAVDSRREDYKKKSNREIKKACKLYLENNPRFLWRWLKYQAKRFNASSIDGPIFDRHR---NIVTDGLEKEKVWADHFEELAKDVSGNSKCADKW---GEIEQRHNEYYEECDKNITWDDIRRAIKVTPNNKAPGIDGIPSELWKL-VQEEKNPESYLSKLLVELLLKMWNSAHIPEIFNTSIIVPIPKKGDPRDTNNYRGISLIPTLVKILAKIVAQKLNELDFKYNLLVKEQAGFRSREECVSQATVLYEVVRRRKIKGIPTWIGFIDFAKAYDRVPHEALLSKLKSQKIGGQLHRVISALYKSPRICVRVGNSISRKFEYSRGVRQGCP 1113
BLAST of mRNA_A-nodosum_M_contig108.2.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG) HSP 1 Score: 239 bits (609), Expect = 8.150e-64 Identity = 198/670 (29.55%), Postives = 304/670 (45.37%), Query Frame = 1
Query: 1 LRVGTLNVNGVRGKQVDLRYLLENRRIGCLALQETLLRATDWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYPVGR--SSPWSIFVRCTGTQLAQP---WIVASVYVPSGKSEGATPMKKIQEQVKALREEFPDDAMAIMGDWNRTRCQVARFVRAVDPEFEVLEPVAGGRVDTRGTRRRSDRTIDHIAVRMVGRATKTAPKVLRDVDISDHYPVVG-----TIACPKGDGEGGTQESVRTKTTTPRRKIDKERQVV-------ADAMAERFVETCHRVAEESGLTATPRTPGPEPLKKRIVQRIKARTKAYIQAMKTTPSTDTSNGAWAVYEARKKEAMAEVEKDNRAKWKRRIQKASE-HLQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSTRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGFDKGAP 1950
L+V T N+ G K+ ++ L + + LQET L A L I GY + A RG+A+ + K E G + SP + + +GT + IV ++++P + + ++ LR + + ++GD+N+ + + + V +R R IDH+A A KVL+ VD+SDH PV+ ++ P T++ + T R I R V + + + AEE T + L ++ I+ R K + + K PS Y K++++ +D R K + KA + L + R W W +G V G P+ + S L+T+ + W H+ LA D TGNS+S ++W G E D + +TE+ AL NK+PG DGIP++ KL E EPT P LL ++N +W + IP S VV IPKKGD+ + NYRGISL+ T KV+ ++S RL K I +K QAGFR +EECV Q+ L E+ +RRK+ GL T++ F+D KAYD VP +AL+ K+ G+RG+ I ALY ++ VRVG +S+ + G +G P
Sbjct: 20 LKVMTFNIRGYVSKREEIDLFLRQYQPTLITLQETNLNAKSNRLRIQGYQTVESKSQLRAGGRGLAIGVRK-ELGLSISELSQSPHWMATKISGTHSSGEKLSLIVVNLHMPHQTMRRKLVIWGLTNYLRKLRSKKKKTKILLVGDFNKDIKSTVSMLNRIG--IGLRRAVVSNSKGSRMNNATMGRMIDHVAYTGFANNPNYA-KVLKSVDLSDHLPVIAEWNIESLKIPLPPKRIDTEKMKKQGT----RFISDNRFAVLASLEPNTENLVNSVTTSIWETAEELDALKTMKAGYRRVLSNETLETIRKRRKVFKKLSKD-PSLAIE------YSELKEKSIQLSREDRRNNKKAEVNKACDLMLGNKSRELWSWLKRFSGRFRSSLVDG--PIFNK-SRQLVTDSETKAEVWAAHFEELARDSTGNSRSAEKWRDIGSDSTEVFTE-CDTPLSWTEIRAALKSTPNNKSPGSDGIPSEAWKLVQDEDEPTSPFAKLLLRLINGIWDAEKIPKQLDPSVVVPIPKKGDMRESNNYRGISLIPTLSKVVSKIISRRLCKIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKNSGIRGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCP 670
BLAST of mRNA_A-nodosum_M_contig108.2.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG) HSP 1 Score: 238 bits (607), Expect = 4.430e-63 Identity = 205/680 (30.15%), Postives = 314/680 (46.18%), Query Frame = 1
Query: 1 LRVGTLNVNGVRGKQVDLRYLLENRRIGCLALQETLLRATDWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYPVGR--SSPWSIFVRCTGT-QLAQPWIVASV--YVPSGKSEGATPMKKIQEQVKALREEFPDDAMAIMGDWNR-TRCQVARFVR-AVDPEFEVLEPVAGGRVDTRGTRRRSDRTIDHIAVRMVGRATKTAPKVLRDVDISDHYPVVGTIACPKGDGEGGTQESVRTKTTTPRRKIDKER------------------QVVADA--MAERFVETCHRVAEESGLTATPRTPGPEPLKKRIVQRIKARTKAYIQAMKTTPSTDTSNGAWAVYEARKKEAMAEVEKDNRAKWKRRIQKASEHLQT-EPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAV-AEEPT-PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSTRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGFDKGAP 1950
L+V T N+ G K+ +L +L+ R +ALQET L A L + Y A RG+AL + K SG + +P + + +G + + + +A V ++P + + ++ +R++ + ++GD+N+ T ++ R + + G R++ R IDHI T KV++ VD+SDH PVV + D E K P+RKID ER Q+ D +AE E R A+E + L K + I+ R K + + + PS Y K++A D R+ ++KA E + T +PR W W +G + G K+ L+T S AW H+ LA D TGNS+S ++W+ G + + E D + +TE+ AL NK+PG DGIP+++ KL EEPT P ++N++W+ IP S +V IPKKGD+ D NYRGISL+ T KVL +++ RL+ K I K QAGFR +EECV Q+ L E+ +RRK+ GL T++ F+D KAYD VP +AL+ K+ G+ G+ I ALY ++ VRVG +S+ + G +G P
Sbjct: 644 LKVMTYNIRGYISKREELDLVLKQNRPSVIALQETNLNAKTNRLRLQEYVTVESKSHLRAGGRGLALGIRKG-SGLSISELIQTPHWLAAKISGAHENDKRFSLACVNLHMPHQTIRRKLVIIGLTRFLRKMRQKKKKSKIMLIGDFNKDTESTISMLNRIGIGLRRATVRNSKGSRMNGAVM----GRMIDHITYSGFPN-NPTYAKVIKSVDLSDHLPVVA-----EWDMEA-------LKIPAPQRKIDVERIKEVGVSFVSINRFAILDQLENDIEDLAENTAEEIWRAADELSCIKEEKQRFKTVLSKETLNAIQRRRKLF-KGISKNPSLSEE------YSNLKEKANEHCRADRRSNKVAEVKKARELMLTNKPRELWSWLKRYSGRFLSSLIDGPIFDKNR---KLVTGHEEKSEAWAAHFEELAKDSTGNSRSAEKWSNMGLGSEAVYTE-CDAILTWTEICAALKSTPNNKSPGSDGIPSEVWKLVQNEEEPTSPFAKLFSKLVNKIWEDEKIPQKLDPSVIVPIPKKGDMRDPNNYRGISLIPTLSKVLSKIIARRLSKIDNKHDILVKEQAGFRSREECVAQATALYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKSSGIGGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCP 1294
BLAST of mRNA_A-nodosum_M_contig108.2.1 vs. uniprot
Match: A0A1R1XWS1_9FUNG (Transposon TX1 protein (Fragment) n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XWS1_9FUNG) HSP 1 Score: 231 bits (589), Expect = 8.800e-63 Identity = 192/669 (28.70%), Postives = 307/669 (45.89%), Query Frame = 1
Query: 13 TLNVNGVRGKQVDLRYLLENRRIGCLALQETLLRATDWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYPVGRSSPWSIFVRCTGTQLAQ-----PWIVASVYVPSGKSEGATPMKKIQEQVKALREEFPDDAMAIMGDWN----RTRCQVARFVRAVDPEFEVLEPVAGGRVDTRGTRRRSDRTIDHIAVRMVGRATKTAPKVLRDVDISDHYPVVGT---------IACPKGDGEGGTQESVRTKTTTPRRKIDKERQVVADAMAERFVETCHRVAEESGLTATPRTPGPEPLKKRIVQRIKARTKAYIQAMKTTPSTDTSNGAWAVYEARKKEAMAEVEKDNRAKWKRRIQKASE-HLQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIP--YTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEEP--TPMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSTRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGFDKGAP 1950
T N+ G GK+ ++ L + + +ALQET L A + + GY A RG+A+ + K ESG + ++ + + L VA++++P + + + + ++ L + + + ++GD+N RT C + R + V TR + R IDHIA + KVL+ VD+SDH PVV I K D E + S + T+ R I ++++ + + R + +EE + T + L K +Q IK R K + + K Y K++A+ +D R K I K S+ L + R W W +G R K S + L+T+ + W H+ LA D TGNS+ +W + +R Y + DI +TE+ AL NK+PG DG+P+++ KL E+ +P + +++ +W + IP S ++ IPKKGD+ D N+RGISL+ T KV+ V++ RL K I +K QAGFR +EECV Q+ L E+ +RRK+ GL T++ F+D KAYD VP +AL+ K+ G+ G+ I ALY ++ VRVG +S+ + G +G P
Sbjct: 2 TYNIRGYVGKRDEIDLLFSDYQPTIMALQETNLNAKSNRMRLQGYQTVESKSTLRAGGRGLAIGVRK-ESGLSISEMCQTPHWMTASVSGLFNNGNKISLFVANLHMPHQTNRRKLAILGLTKYLRKLHSKKKNSKILLLGDFNKDTQRTLCLLNRI------GIGLRRAVVYNSKGTRMNMGKMGRMIDHIAYSGFSNSPNYT-KVLKSVDLSDHLPVVSEWKIDSLKTPIPSIKIDAEK-IKNSGESFTSNNRFLILADQEMDPETLVNRINTSIWETSEELAVIKTDKKHSTV-LSKETIQTIKKRRKVFRKVSKDVSFEKE-------YSELKEKAIQLCREDRRNNKKAEINKVSDLMLGKKSRELWSWLKRFSG---RFKSSATDGPIFDKNKKLITDAEEKADTWATHFEGLAKDNTGNSRIAKKW----KSLERTSEIYKECDIQLTWTEICAALKSTPNNKSPGFDGVPSEVWKLVQHEDVPNSPFAKIIHKLISGIWDTERIPKQMDPSVIIPIPKKGDMRDPNNFRGISLIPTLAKVVSKVIARRLCDIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWVGFIDFAKAYDRVPHQALLCKIKNSGIGGKLYRMIEALYRSPKMCVRVGDKISKLVEYNCGVRQGCP 646
BLAST of mRNA_A-nodosum_M_contig108.2.1 vs. uniprot
Match: A0A498SLY1_ACAVI (Reverse transcriptase domain-containing protein n=1 Tax=Acanthocheilonema viteae TaxID=6277 RepID=A0A498SLY1_ACAVI) HSP 1 Score: 228 bits (582), Expect = 5.030e-62 Identity = 165/533 (30.96%), Postives = 260/533 (48.78%), Query Frame = 1
Query: 367 QVKALREEFPDDAMAIMGDWNRTRCQVARFVRAVDP------EFEVLEPVAGGRVDTRGTRRRSDRTIDHIAVRMVGRATKTAPKVLRDVDISDHYPVVGTIACPKGDGEGGTQESV------RTKTTTPRRKI----------DKERQVVADAMAERFVETCHRVAEESGLTATPRTPGPEPLKKRIVQRIKARTKAYIQAMKTTPSTDTSNGAWAVYEARKKEAMAEVEKDNRAKWKRRIQKASEHLQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAEEPT------PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSTRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRI 1881
Q++ + FPD + +MGDWN T+ ++ ++ V P +VL G T + ID I + R+ ++ +V R D+SDHYP+ + CP +++ R K + I D E + V +A AE F V+ + L + + P L K+ + IK + + K +S Y+ +K ++ + + KW I +E + EPR F++W N+ G K+ P+K +G L I+ WR+HY L D TG+S++ + W+++ R +E + ++E++ A+ + NKA G DGIPA+ KL + T +G L ++ ++W S IP++W + ++SIPKKGDLT NYRGISL+ K+L +LS+R++ E GI K QAGFR++EEC+ Q L+E +RRK G PTY+ F+D KKAYD V EAL K+ G+ G+TL I+ LY S I
Sbjct: 34 QLEQSSDRFPDAPLIMMGDWNMTKKELKAWLSTVLPLGSLCNGLDVLN--CDGCDSTFHRSNCKNSAIDFIICNSIARSFLSSCRVDRGCDLSDHYPI-SALFCPSNTIVNTEKKNSLMYNMNRNKVVANKESIVCHNRFDILSDLESEDV-NATAENFESAVKLVSSDLHLMSRNKKPARLCLSKKTRKAIKIKNSLF----KMCQCKGSSMADLDAYKKARKGVTNLIKTEKKNKWFNHIANGAEFRKHEPRMFFRWLKNLVGVKSYPKLG---PLKDK-NGVLQVTPEKIAEVWREHYRNLFEDSTGHSKNKEYWSKF-PIHIRSTVELSNIPFSWSEIVLAVRSLSTNKAAGPDGIPAEFFKLINNDMDTGLAPCTKLGKFLFSIFEKVWVSGKIPNSWNLAKIISIPKKGDLTITDNYRGISLIPVISKILSKMLSSRISYHLESNGIICKEQAGFRKREECLGQVIALVEAIQRRKHKGEPTYLAFIDFKKAYDMVAHEALFLKMTGVGISGKTLDLIKDLYKNSSI 553
BLAST of mRNA_A-nodosum_M_contig108.2.1 vs. uniprot
Match: A0A1R1X4V9_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X4V9_9FUNG) HSP 1 Score: 229 bits (585), Expect = 1.550e-60 Identity = 197/668 (29.49%), Postives = 310/668 (46.41%), Query Frame = 1
Query: 13 TLNVNGVRGKQVDLRYLLENRRIGCLALQETLLRATDWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYPVG--RSSP-WSIF----VRCTGTQLAQPWIVASVYVPSGKSEGATPMKKIQEQVKALREEFPDDAMAIMGDWNR-TRCQVARFVR-AVDPEFEVLEPVAGGRVD--TRGTRRRSDRTIDHIAVRMVGRATKTAPKVLRDVDISDHYPVVG--------TIACPKGDGEGGTQESVRTKTTTPRRKIDKERQVVADAMAERFVETCHRVAEESGLTATPRTPGPEPLKKRIVQRIKARTKAYIQAMKTTPSTDTSNGAWAVYEARKKEAMAEVEKDNRAKWKRRIQKASE-HLQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSTRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRGRTLGFIRALYSQSRIQVRVGGTVSEPADLLRGFDKGAP 1950
T N+ G GK+ ++ ++ + LALQET L A L + GY A RG+A+ + K E G V R +P W V G +L V ++++P + + ++ + ++ LR + + +MGD+N+ T ++ R + + G R++ T G R IDH+A + A KVL+ VD+SDH PV+ T PK +E + + R + ++ + + + + AEE T + L ++ I+ R K + + K PS + Y K++A+ +D R K ++KA + L + R W W +G R + S V+ + L+TE + W H+ LA D TGNS+S ++W G E D + + E+ AL K+PG DGIP++ K E EPT P L ++ ++W + +IP S VV IPKKGD+ + NYRGISL+ T KV+ ++ RL K I +K QAGFR +EECV Q+ L E+ +RRK+ GL T++ F+D KAYD VP EAL+ K+ G+ G+ I ALY ++ VR+GG +S+ + G +G P
Sbjct: 2 TFNIRGSIGKREEVDLVMRQYQPTILALQETNLNAKSNRLRLQGYQTIESKSHLRAGGRGLAIGVRK-ELGISVSELRQTPHWMAGAVSGVHNNGEKLKL--FVINLHLPHQTNRRKLAILELTKYLRKLRSKKRKAKIVLMGDFNKDTNSTISMLNRIGIGLRRADVNNSKGSRMNGVTMG------RMIDHVAYSGFLNSPNYA-KVLKSVDLSDHLPVISEWNIESLKTPVPPKRIDTAKMKEIGESFISNNRFSVLADQDSNTENLVDSVTTSIWETAEELDALKTTPSEYRRVLSNETLETIRKRRKMFKKLAKD-PSIEME------YSDLKEKAIQLCREDRRNNRKAEVKKACDLMLGNKSRELWSWLKRFSG---RFRSSLVEGPIFDKNKKLVTESEKKAEVWAAHFEELAKDSTGNSRSAEKWHGMGNDSAGVFTE-CDTPLSWDEICAALKSTPNKKSPGYDGIPSEAWKTVQHEIEPTSPFAKVLFRLIKEIWDTESIPEQLDASVVVPIPKKGDMREPNNYRGISLIPTLSKVVSKIIVRRLGKIDNKYDILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLKKIRAGGIGGKVHRIIEALYRSPKMCVRIGGQLSKLVEYNCGVRQGCP 648
BLAST of mRNA_A-nodosum_M_contig108.2.1 vs. uniprot
Match: A0A1R1XIW6_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XIW6_9FUNG) HSP 1 Score: 227 bits (578), Expect = 7.630e-60 Identity = 182/628 (28.98%), Postives = 291/628 (46.34%), Query Frame = 1
Query: 1 LRVGTLNVNGVRGKQVDLRYLLENRRIGCLALQETLLRATDWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYPVGR--SSPWSIFVRCTGTQLAQP---WIVASVYVPSGKSEGATPMKKIQEQVKALREEFPDDAMAIMGDWNRTRCQVARFVRAVDPEFEVLEPVAGGRVDTRGTRRRSDRTIDHIAVRMVGRATKTAPKVLRDVDISDHYPVVGTIAC--------PKGDGEGGTQESVRTKTTTPRRKIDKERQVVADAMAERFVETCHRVAEESGLTATPRTPGPEPLKKRIVQRIKARTKAYIQAMKTTPSTDTSNGAWAVYEARKKEAMAEVEKDNRAKWKRRIQKASE-HLQTEPRNFWKWASNIAGWSPRCKVSGVQPVKHAGSGSLLTEVTAISAAWRDHYGRLAADPTGNSQSPDRWTRWGQCPQRKHLEYLDEDIPYTEMLEALNRIRRNKAPGQDGIPADLLKLAVAE-EPT-PMGNALLAVLNQMWKSSTIPSAWRNSTVVSIPKKGDLTDMGNYRGISLMATALKVLVVVLSTRLNGAFEKEGIFSKAQAGFRRKEECVTQSACLLEITKRRKLMGLPTYMLFVDLKKAYDTVPQEALMAKLDFYGVRG 1836
L+V T N+ G K+ ++ +L + L LQET L A L I GY RG+A+ + K E G + SP + + +GT + IV ++++P + + + ++ LR + + ++GD+N+ + + + V +R R IDH+A A KVL+ VD+SDH PV+ PK +E ++ T+ R + ++++ + + ++ + AEE T L K ++ I+ R KA+ + +K PS + Y K++A+ +D K ++KA + L + R W W +G V G K+ L+T+ A + W H+ LA D TGNS+S +W G+ + E D + + E+ AL NK+PG DGIP+++ K+ E EPT P+ +L ++ +W + IP S V+ IPKKGD+ D NYRGISL+ T KVL +++ RL K I +K QAGFR +EECV Q+ L E+ +RRK+ GL T++ F+D KAYD VP EAL+ K+ G+ G
Sbjct: 392 LKVMTFNIRGYVSKREEIDLVLRQYQPTLLMLQETNLNAKSNRLRIQGYQTVESKSHLRTGGRGLAIGVRK-ELGLSISELSQSPHWMATKISGTHSSGEKLSLIVVNLHMPHQTMRRKLVILGLTKYLRKLRSKKKKTKILLVGDFNKDIKSTVSILNRIG--IGLRRAVVSNSKGSRMNNATMGRMIDHVAYTGFSNNPNYA-KVLKSVDLSDHLPVIAEWNIENLKIPVHPKRIDTSKVKELRQSFTSNNRFAVLADQELNTENLVNGVTKSIYETAEELDALKTISFDHRRVLSKETLETIRKRRKAFKKLLKD-PSVEIE------YSDLKEKAIQLCRQDRMNNKKAEVKKACDLMLCNKSRELWSWLKRFSGRFSSSLVDGPIFDKNR---QLITDSEAKAEVWASHFEELAKDSTGNSRSAKKWRDIGKNYTAEFNE-CDTPLSWAEICAALKSTPNNKSPGSDGIPSEVWKMVQYEDEPTSPLAKLILRLITGIWDAEKIPKQLDPSVVIPIPKKGDIRDPNNYRGISLIPTLSKVLSKIIARRLCKIDNKYSILAKEQAGFRTREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLRKIKTAGIGG 1004 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig108.2.1 >prot_A-nodosum_M_contig108.2.1 ID=prot_A-nodosum_M_contig108.2.1|Name=mRNA_A-nodosum_M_contig108.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=663bp LRVGTLNVNGVRGKQVDLRYLLENRRIGCLALQETLLRATDWNLNIPGYHback to top mRNA from alignment at A-nodosum_M_contig108:18555..20687- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig108.2.1 ID=mRNA_A-nodosum_M_contig108.2.1|Name=mRNA_A-nodosum_M_contig108.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2133bp|location=Sequence derived from alignment at A-nodosum_M_contig108:18555..20687- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig108:18555..20687- >mRNA_A-nodosum_M_contig108.2.1 ID=mRNA_A-nodosum_M_contig108.2.1|Name=mRNA_A-nodosum_M_contig108.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1989bp|location=Sequence derived from alignment at A-nodosum_M_contig108:18555..20687- (Ascophyllum nodosum dioecious)back to top |