mRNA_A-nodosum_M_contig10791.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10791.1.1
Unique NamemRNA_A-nodosum_M_contig10791.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A151I9F2_9HYME (Copia protein n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I9F2_9HYME)

HSP 1 Score: 57.4 bits (137), Expect = 4.220e-9
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAH-KRASRGAKCILLG 207
            WAEA+A A  + N+C+T+ L   KTP+E WHGR P  + L  FG   +   + P   K   RG KC  LG
Sbjct:   16 WAEAVATANYIRNRCITNVLK-GKTPFEAWHGRRPNVEHLRIFGETAFMLDKTPGKGKLDPRGIKCTFLG 84          
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A0J7N2J7_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7N2J7_LASNI)

HSP 1 Score: 60.5 bits (145), Expect = 4.930e-9
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1
Query:    1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAH-KRASRGAKCILLG 207
            WAE +A A  + N+C+T +L  DKTPYE+W+G+ P    +  FG V Y   + P   K   RG +CI LG
Sbjct:  420 WAEGVATANFVRNRCITKTLT-DKTPYELWYGKRPNVKHIRIFGEVAYMLDKTPGKGKLEPRGIRCIFLG 488          
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A026VTI2_OOCBI (Copia protein n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026VTI2_OOCBI)

HSP 1 Score: 52.0 bits (123), Expect = 6.640e-7
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 1
Query:    1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAHKRASRGAKCILL 204
            WAE +  A  + N+ V+     +KTPYE+W G++P    L  FG+V Y  V K   K+    AK +LL
Sbjct:   40 WAEVVNTAVYVLNRVVSTGTSCNKTPYELWTGKVPDLQHLKIFGSVAYVHVPKMFTKKFDARAKKMLL 107          
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: UPI0015BF5683 (DDE-type integrase/transposase/recombinase n=1 Tax=Pseudomonas reactans TaxID=117680 RepID=UPI0015BF5683)

HSP 1 Score: 53.1 bits (126), Expect = 1.860e-6
Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 1
Query:    1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAHKRASRGAKCILLG 207
            W  A+  A  + N   T  +D  KTPYE+WHGR+P+   L  +G   Y R E  ++K   R  KCI +G
Sbjct:  414 WGYALQTAARLLNMAPTKKVD--KTPYEIWHGRVPSLSYLKVWGCEAYVRQEA-SNKLEPRSTKCIFVG 479          
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A6L2KHF2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KHF2_TANCI)

HSP 1 Score: 52.8 bits (125), Expect = 2.610e-6
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFG 132
            WAEA+  AC + NK +     H+KTPYE+ HGRLP+ D + PFG
Sbjct:  944 WAEAVNTACYVQNKVLVTK-PHNKTPYELLHGRLPSIDFMRPFG 986          
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A8J5L2U8_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L2U8_ZINOF)

HSP 1 Score: 52.0 bits (123), Expect = 4.310e-6
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRV-EKPAHKRASRGAKCILLG 207
            WAEA+A A  + N+C T S+  D+TP E W G+ P    L  FG++ Y+ V E+   K   R  K + +G
Sbjct:   64 WAEAVACAVYLLNRCPTKSVK-DQTPIEAWSGKKPDVSHLRIFGSISYKHVPEQERTKPDDRSEKFVFIG 132          
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A699SD93_TANCI (Integrase, catalytic region, zinc finger, CCHC-type, peptidase aspartic, catalytic n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699SD93_TANCI)

HSP 1 Score: 50.1 bits (118), Expect = 4.640e-6
Identity = 24/62 (38.71%), Postives = 35/62 (56.45%), Query Frame = 1
Query:    1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAHKRASRG 186
            WAEA+A AC   N+ +   L H+KTPYE+ HG+ P       FG + Y   +  A +++S G
Sbjct:   12 WAEAVATACFTQNRSII-RLRHEKTPYELMHGKQPDLSYFHVFGAICYPTNDAMASEQSSSG 72          
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A6L2M416_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2M416_TANCI)

HSP 1 Score: 51.6 bits (122), Expect = 6.590e-6
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1
Query:    1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGY 144
            W EA+A AC+  N+ +   L HDKTPYE+ HG+LP    L  FG + Y
Sbjct:  841 WVEAVATACNTQNRSIV-RLRHDKTPYELLHGKLPDLSFLHVFGALYY 887          
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A0J7NGT3_LASNI (Retrovirus-related gag-pol polyprotein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NGT3_LASNI)

HSP 1 Score: 51.6 bits (122), Expect = 6.650e-6
Identity = 28/70 (40.00%), Postives = 38/70 (54.29%), Query Frame = 1
Query:    1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAH-KRASRGAKCILLG 207
            WA+A+A AC + N+C + SL    TPYE W G LP  + L  FG   +     PA  K A R  + +L+G
Sbjct:  632 WADAVATACHIRNRCPSSSLG-GITPYEKWTGELPKLEHLRTFGAKVFVLDNNPAKDKFAPRSIEGVLIG 700          
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A699S7L4_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699S7L4_TANCI)

HSP 1 Score: 49.7 bits (117), Expect = 1.170e-5
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFG 132
            WAEA+  AC + N+ + +   H+KTPYE+ HGRLP+   + PFG
Sbjct:   10 WAEAVNTACYVQNRVLVNK-PHNKTPYELLHGRLPSIGFMRPFG 52          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151I9F2_9HYME4.220e-942.86Copia protein n=1 Tax=Cyphomyrmex costatus TaxID=4... [more]
A0A0J7N2J7_LASNI4.930e-942.86Retrovirus-related pol polyprotein from transposon... [more]
A0A026VTI2_OOCBI6.640e-738.24Copia protein n=1 Tax=Ooceraea biroi TaxID=2015173... [more]
UPI0015BF56831.860e-639.13DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6L2KHF2_TANCI2.610e-652.27Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5L2U8_ZINOF4.310e-638.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A699SD93_TANCI4.640e-638.71Integrase, catalytic region, zinc finger, CCHC-typ... [more]
A0A6L2M416_TANCI6.590e-647.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7NGT3_LASNI6.650e-640.00Retrovirus-related gag-pol polyprotein n=2 Tax=Las... [more]
A0A699S7L4_TANCI1.170e-547.73Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10791contigA-nodosum_M_contig10791:11239..11445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra85518
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size207
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.9e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
DescriptionGAG-pre-integrase domain
Cds size195
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866463.9260964-UTR-A-nodosum_M_contig10791:11238..112501680866463.9260964-UTR-A-nodosum_M_contig10791:11238..11250Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10791 11239..11250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866463.937243-CDS-A-nodosum_M_contig10791:11250..114451680866463.937243-CDS-A-nodosum_M_contig10791:11250..11445Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10791 11251..11445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10791.1.1prot_A-nodosum_M_contig10791.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10791 11251..11445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10791.1.1

>prot_A-nodosum_M_contig10791.1.1 ID=prot_A-nodosum_M_contig10791.1.1|Name=mRNA_A-nodosum_M_contig10791.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp
MAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKP
AHKRASRGAKCILLG
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mRNA from alignment at A-nodosum_M_contig10791:11239..11445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10791.1.1 ID=mRNA_A-nodosum_M_contig10791.1.1|Name=mRNA_A-nodosum_M_contig10791.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at A-nodosum_M_contig10791:11239..11445+ (Ascophyllum nodosum dioecious)
TGGGCGGAAGCGATGGCCTACGCCTGCGATATGTCCAACAAGTGCGTCAC CGATTCGCTCGATCACGACAAGACACCGTACGAGATGTGGCATGGTCGAC TACCCGCGTTCGACACCCTGTTACCGTTCGGTACCGTGGGCTACCGGCGC GTGGAAAAGCCGGCGCACAAGCGGGCTTCGCGCGGGGCCAAGTGCATCCT TCTAGGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10791:11239..11445+

>mRNA_A-nodosum_M_contig10791.1.1 ID=mRNA_A-nodosum_M_contig10791.1.1|Name=mRNA_A-nodosum_M_contig10791.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig10791:11239..11445+ (Ascophyllum nodosum dioecious)
ATGGCCTACGCCTGCGATATGTCCAACAAGTGCGTCACCGATTCGCTCGA
TCACGACAAGACACCGTACGAGATGTGGCATGGTCGACTACCCGCGTTCG
ACACCCTGTTACCGTTCGGTACCGTGGGCTACCGGCGCGTGGAAAAGCCG
GCGCACAAGCGGGCTTCGCGCGGGGCCAAGTGCATCCTTCTAGGT
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