mRNA_A-nodosum_M_contig10791.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A151I9F2_9HYME (Copia protein n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I9F2_9HYME) HSP 1 Score: 57.4 bits (137), Expect = 4.220e-9 Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 1
Query: 1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAH-KRASRGAKCILLG 207
WAEA+A A + N+C+T+ L KTP+E WHGR P + L FG + + P K RG KC LG
Sbjct: 16 WAEAVATANYIRNRCITNVLK-GKTPFEAWHGRRPNVEHLRIFGETAFMLDKTPGKGKLDPRGIKCTFLG 84
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A0J7N2J7_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7N2J7_LASNI) HSP 1 Score: 60.5 bits (145), Expect = 4.930e-9 Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAH-KRASRGAKCILLG 207
WAE +A A + N+C+T +L DKTPYE+W+G+ P + FG V Y + P K RG +CI LG
Sbjct: 420 WAEGVATANFVRNRCITKTLT-DKTPYELWYGKRPNVKHIRIFGEVAYMLDKTPGKGKLEPRGIRCIFLG 488
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A026VTI2_OOCBI (Copia protein n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026VTI2_OOCBI) HSP 1 Score: 52.0 bits (123), Expect = 6.640e-7 Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 1
Query: 1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAHKRASRGAKCILL 204
WAE + A + N+ V+ +KTPYE+W G++P L FG+V Y V K K+ AK +LL
Sbjct: 40 WAEVVNTAVYVLNRVVSTGTSCNKTPYELWTGKVPDLQHLKIFGSVAYVHVPKMFTKKFDARAKKMLL 107
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: UPI0015BF5683 (DDE-type integrase/transposase/recombinase n=1 Tax=Pseudomonas reactans TaxID=117680 RepID=UPI0015BF5683) HSP 1 Score: 53.1 bits (126), Expect = 1.860e-6 Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 1
Query: 1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAHKRASRGAKCILLG 207
W A+ A + N T +D KTPYE+WHGR+P+ L +G Y R E ++K R KCI +G
Sbjct: 414 WGYALQTAARLLNMAPTKKVD--KTPYEIWHGRVPSLSYLKVWGCEAYVRQEA-SNKLEPRSTKCIFVG 479
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A6L2KHF2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KHF2_TANCI) HSP 1 Score: 52.8 bits (125), Expect = 2.610e-6 Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1
Query: 1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFG 132
WAEA+ AC + NK + H+KTPYE+ HGRLP+ D + PFG
Sbjct: 944 WAEAVNTACYVQNKVLVTK-PHNKTPYELLHGRLPSIDFMRPFG 986
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A8J5L2U8_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L2U8_ZINOF) HSP 1 Score: 52.0 bits (123), Expect = 4.310e-6 Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 1
Query: 1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRV-EKPAHKRASRGAKCILLG 207
WAEA+A A + N+C T S+ D+TP E W G+ P L FG++ Y+ V E+ K R K + +G
Sbjct: 64 WAEAVACAVYLLNRCPTKSVK-DQTPIEAWSGKKPDVSHLRIFGSISYKHVPEQERTKPDDRSEKFVFIG 132
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A699SD93_TANCI (Integrase, catalytic region, zinc finger, CCHC-type, peptidase aspartic, catalytic n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699SD93_TANCI) HSP 1 Score: 50.1 bits (118), Expect = 4.640e-6 Identity = 24/62 (38.71%), Postives = 35/62 (56.45%), Query Frame = 1
Query: 1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAHKRASRG 186
WAEA+A AC N+ + L H+KTPYE+ HG+ P FG + Y + A +++S G
Sbjct: 12 WAEAVATACFTQNRSII-RLRHEKTPYELMHGKQPDLSYFHVFGAICYPTNDAMASEQSSSG 72
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A6L2M416_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2M416_TANCI) HSP 1 Score: 51.6 bits (122), Expect = 6.590e-6 Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1
Query: 1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGY 144
W EA+A AC+ N+ + L HDKTPYE+ HG+LP L FG + Y
Sbjct: 841 WVEAVATACNTQNRSIV-RLRHDKTPYELLHGKLPDLSFLHVFGALYY 887
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A0J7NGT3_LASNI (Retrovirus-related gag-pol polyprotein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NGT3_LASNI) HSP 1 Score: 51.6 bits (122), Expect = 6.650e-6 Identity = 28/70 (40.00%), Postives = 38/70 (54.29%), Query Frame = 1
Query: 1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPAH-KRASRGAKCILLG 207
WA+A+A AC + N+C + SL TPYE W G LP + L FG + PA K A R + +L+G
Sbjct: 632 WADAVATACHIRNRCPSSSLG-GITPYEKWTGELPKLEHLRTFGAKVFVLDNNPAKDKFAPRSIEGVLIG 700
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Match: A0A699S7L4_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699S7L4_TANCI) HSP 1 Score: 49.7 bits (117), Expect = 1.170e-5 Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1
Query: 1 WAEAMAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFG 132
WAEA+ AC + N+ + + H+KTPYE+ HGRLP+ + PFG
Sbjct: 10 WAEAVNTACYVQNRVLVNK-PHNKTPYELLHGRLPSIGFMRPFG 52 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10791.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10791.1.1 >prot_A-nodosum_M_contig10791.1.1 ID=prot_A-nodosum_M_contig10791.1.1|Name=mRNA_A-nodosum_M_contig10791.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp MAYACDMSNKCVTDSLDHDKTPYEMWHGRLPAFDTLLPFGTVGYRRVEKPback to top mRNA from alignment at A-nodosum_M_contig10791:11239..11445+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10791.1.1 ID=mRNA_A-nodosum_M_contig10791.1.1|Name=mRNA_A-nodosum_M_contig10791.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at A-nodosum_M_contig10791:11239..11445+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10791:11239..11445+ >mRNA_A-nodosum_M_contig10791.1.1 ID=mRNA_A-nodosum_M_contig10791.1.1|Name=mRNA_A-nodosum_M_contig10791.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig10791:11239..11445+ (Ascophyllum nodosum dioecious)back to top |