mRNA_A-nodosum_M_contig10780.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10780.1.1
Unique NamemRNA_A-nodosum_M_contig10780.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10780.1.1 vs. uniprot
Match: A0A6H5L5M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M4_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 3.420e-43
Identity = 79/116 (68.10%), Postives = 101/116 (87.07%), Query Frame = 2 
Query:   74 MDSHLLSHPDVRLFFYAFLLLLGIYVSVMCTCFGTLSIRKAKSLFREYENLEQRYDATFQRRDDVLHHIGGARNRGEHDQAALLEKQLARVDGDLDVLEQRLQDLDERHSSNKRPK 421
            MDSHLL+HPDVR+  Y+FLLLLGIYVSVM TC+GT+S+ K K+ F+E ++LE+ Y+AT QRR+D+L+HIGGA+ RGEH QAA+L+KQL RVDGDLD++E+RL+DLD RH S KRPK
Sbjct:    1 MDSHLLAHPDVRVLLYSFLLLLGIYVSVMYTCWGTVSLSKVKAEFKERQDLERAYEATLQRREDMLYHIGGAQQRGEHQQAAVLDKQLLRVDGDLDLIEERLRDLDARHRS-KRPK 115
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10780.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5M4_9PHAE3.420e-4368.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10780contigA-nodosum_M_contig10780:3398..5055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1276
Hectar predicted targeting categorysignal anchor
Exons2
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866463.1971703-UTR-A-nodosum_M_contig10780:3397..42431680866463.1971703-UTR-A-nodosum_M_contig10780:3397..4243Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10780 3398..4243 -
1680866463.2263913-UTR-A-nodosum_M_contig10780:4982..50551680866463.2263913-UTR-A-nodosum_M_contig10780:4982..5055Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10780 4983..5055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866463.2069883-CDS-A-nodosum_M_contig10780:4243..44801680866463.2069883-CDS-A-nodosum_M_contig10780:4243..4480Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10780 4244..4480 -
1680866463.2182512-CDS-A-nodosum_M_contig10780:4862..49821680866463.2182512-CDS-A-nodosum_M_contig10780:4862..4982Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10780 4863..4982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10780.1.1prot_A-nodosum_M_contig10780.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10780 4244..4982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10780.1.1

>prot_A-nodosum_M_contig10780.1.1 ID=prot_A-nodosum_M_contig10780.1.1|Name=mRNA_A-nodosum_M_contig10780.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
MDSHLLSHPDVRLFFYAFLLLLGIYVSVMCTCFGTLSIRKAKSLFREYEN
LEQRYDATFQRRDDVLHHIGGARNRGEHDQAALLEKQLARVDGDLDVLEQ
RLQDLDERHSSNKRPKKM*
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mRNA from alignment at A-nodosum_M_contig10780:3398..5055-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10780.1.1 ID=mRNA_A-nodosum_M_contig10780.1.1|Name=mRNA_A-nodosum_M_contig10780.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1658bp|location=Sequence derived from alignment at A-nodosum_M_contig10780:3398..5055- (Ascophyllum nodosum dioecious)
ATCTGAGAGATGTCCCAATGTGAGAGCCCCGAAAACCTGTGGAGAATCTG
AGAAAAATCGACCGCTGGACTTCATGGATTCCCACCTGCTATCACACCCC
GATGTTCGGCTGTTTTTTTACGCATTTCTCCTTCTGCTTGGGATATACGT
GTCTGTGATGTGTACATGCTTCGGGACGTTGTCAATTAGAAAGGTGAGAA
TACCAGTACCACTTTCAGTAGTCCTTACGATATCATTCCAGTATAATACA
GAGTAGCTACCGAAGTTGAAAGCGAAAATGTAGCACCTCTAGTCTACGAG
TACAGCACGACCATCGATTTGTACCCTACAGTAGAATAAAAATGTGCCTG
CGACAATCTAGGCTTGAGGCTCCACATGCCAAGTGTCGACAGGTAAACGG
GCAAAGCTCTTCTGGTCTGCAGTAATGCCGCGAACTTCGAATAACAAACA
ACGGCCAGTAGCAAGAAAAGCAATCAGCTCCTCAAGACCAAATCTGCATC
CATTCGTGCCAAAATTCTCCCGACACATGGCTGACTTTTAAGCACGCATC
CCTCTCTGCCATCACCGAAAATCAGGCAAAATCGTTGTTCAGAGAATATG
AAAATTTGGAGCAACGGTACGACGCTACCTTCCAGAGACGAGACGATGTG
CTCCACCACATCGGTGGCGCAAGAAACCGCGGCGAGCACGATCAAGCGGC
CCTACTAGAGAAGCAACTAGCCAGAGTAGATGGCGATCTAGATGTTTTAG
AACAGCGTTTGCAAGATCTCGATGAACGACACAGCAGCAACAAGAGGCCC
AAGAAGATGTAGTTGAGAAATGAGAATCGCGCGAGGCGTGCTGAGGTTGC
TTCCGGACTTTATGCATCTCATGTAAAATCACGGCACTCAGTACTGGTAT
TATTTTGCAGAAACACCTTCTATTCTGTACGAAGTTCGTGTTATATGTTA
CTTGAATAGAGCCTACTCTTTTTTTTTGCTTGGAAAAATGATGATGATGC
ATACCTGGTACACCCGAATCATCTGATAGCCGTGTGCCTCTGGCGAAGGT
TCGGTTAGGGCGATGTAGAGACGTTTCCAAACTGTGTATTGTAATATTGG
AAAATTTGGAAAGTTATTGTAGACCTATTATGTCAGCAGTTGAGGTAAAG
GTTTGGAAAAAGGCATCCCCGCTTGAGATAGGTTGATACGCCTAGAAGAA
GAGAGAAGCGGAAGAGGCGGACAAGGTTGAGGTTGCACCTGGGGTGACTG
TAGCAAGCTTGAGACGTTTTCGAACCGCGTTGAATGGGCCAACCCAAGGA
CAAGCGACGTCGATTGTGCCGTTAGTGAAAACTGAAACCCTAGAGTACGG
AATGTGGTAGATGCTACGCGTTTTTTGGGTGCATGGTTGCGAGCCGGGGA
GGGGTATCGGATGGCTCGCGGCTGGCTAATGCAGCAAACTCTCTCTATCG
AATGCCCCTCGTCTATCTTTTTCTGGCCTGTGTATTTTTGTTATTCCTGT
TCCTTTCTCTTTGTCGATTTTTGTGTGTTTGTGTTTTTCTTTTGCTCTCG
TTGGAGCTTGGTAGATGTTCCTCTGATTTTTTTCTGTCCAGCAGACCACG
TACCGGATTGGCAACCACGTATATTACTGGGTATGGTTGAGGCCCGATCA
GTTAATGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10780:3398..5055-

>mRNA_A-nodosum_M_contig10780.1.1 ID=mRNA_A-nodosum_M_contig10780.1.1|Name=mRNA_A-nodosum_M_contig10780.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig10780:3398..5055- (Ascophyllum nodosum dioecious)
ATGGATTCCCACCTGCTATCACACCCCGATGTTCGGCTGTTTTTTTACGC
ATTTCTCCTTCTGCTTGGGATATACGTGTCTGTGATGTGTACATGCTTCG
GGACGTTGTCAATTAGAAAGGCAAAATCGTTGTTCAGAGAATATGAAAAT
TTGGAGCAACGGTACGACGCTACCTTCCAGAGACGAGACGATGTGCTCCA
CCACATCGGTGGCGCAAGAAACCGCGGCGAGCACGATCAAGCGGCCCTAC
TAGAGAAGCAACTAGCCAGAGTAGATGGCGATCTAGATGTTTTAGAACAG
CGTTTGCAAGATCTCGATGAACGACACAGCAGCAACAAGAGGCCCAAGAA
GATGTAG
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