mRNA_A-nodosum_M_contig1076.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1076.3.1
Unique NamemRNA_A-nodosum_M_contig1076.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: UPI001D05617A (reverse transcriptase (RNA-dependent DNA polymerase) domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D05617A)

HSP 1 Score: 56.2 bits (134), Expect = 3.160e-7
Identity = 33/90 (36.67%), Postives = 48/90 (53.33%), Query Frame = 1
Query:    7 REILEMNQKAFAKNMIEQYNISAT--LNIPGSPGVDLGRRKYGEPGGNEEFPKYRAL----VGSLMWLLVMTRSDIANAFRACARHSHNP 258
            R  +E++Q+A+ + ++  YN+S     N PG       RR+   P      PKY+A     VGSLM+ ++ TRSDI  +  AC RH  NP
Sbjct:  833 RRRIELSQRAYIEKILRTYNMSDCNPANTPGRRSAPASRRRLARP------PKYQAAYAKRVGSLMYAMLGTRSDICFSVGACCRHLANP 916          
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.090e-6
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
            L ++Q+ + K + E+Y +     IP      L      EP  + E+P +RAL+GSL+W+ ++TR DIANA RA AR+   P
Sbjct:  422 LTISQETYTKELGERYGVEWGGGIPLPTTWRLWDSDVNEP--SVEYP-FRALIGSLLWVALLTRPDIANAVRAVARYCSEP 499          
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 4.920e-6
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
            L ++Q+ + K + E++ +     IP      L      EP  + E+P +RAL+GSL+W+ ++TR DIANA RA AR+   P
Sbjct:  118 LTISQETYTKELGERHGVEWGGGIPLPTTWRLWDSDVNEP--SVEYP-FRALIGSLLWVALLTRPDIANAVRAVARYCSEP 195          
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A0J7K6V4_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K6V4_LASNI)

HSP 1 Score: 52.4 bits (124), Expect = 5.010e-6
Identity = 28/83 (33.73%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   16 LEMNQKAFAKNMIEQYNI--SATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
            L +NQ  +A+ +IE++ +  +  ++IP     DL  + +G  G   E P Y+  VGSL++L ++TR DIA A  A ++++ +P
Sbjct:  138 LLVNQTKYARKIIERFRVEDAHAVSIPADQHQDLSLKHFGNKGKAIEVP-YKEAVGSLLYLAMVTRPDIAYAVSAVSQYAESP 219          
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A6A4ZE01_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZE01_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 9.960e-6
Identity = 26/81 (32.10%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
            L M Q A+ + ++E++ +S+   +      D     + E   N +  +YRA++GSL++L+V TR DIA+A +  + H H+P
Sbjct: 1374 LTMTQDAYTEKVLERFKMSSCHPVTTPEVADQEDLWHDENQPNADQGEYRAMIGSLVYLMVCTRPDIAHAVQRLSCHLHDP 1454          
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A2D7NJ42_9PLAN (CCHC-type domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D7NJ42_9PLAN)

HSP 1 Score: 51.6 bits (122), Expect = 1.310e-5
Identity = 28/86 (32.56%), Postives = 46/86 (53.49%), Query Frame = 1
Query:   16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPK-----YRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
            ++++Q+ + + +++++       +P      +   K   P  +EE  +     YR +VGSLMWL V TR D+A A  ACAR S NP
Sbjct:  172 IQIHQEHYIEEVLKKFQCEHWKVVPTPARDSITLHKGQSPTTDEERARMAKMPYRQVVGSLMWLTVCTRPDLAQALGACARFSANP 257          
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A2D7NJ29_9PLAN (DNA (cytosine-5-)-methyltransferase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D7NJ29_9PLAN)

HSP 1 Score: 51.6 bits (122), Expect = 1.370e-5
Identity = 28/86 (32.56%), Postives = 46/86 (53.49%), Query Frame = 1
Query:   16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPK-----YRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
            ++++Q+ + + +++++       +P      +   K   P  +EE  +     YR +VGSLMWL V TR D+A A  ACAR S NP
Sbjct: 2135 IQIHQEHYIEEVLKKFQCEHWKVVPTPARDSITLHKGQSPTTDEERARMAKMPYRQVVGSLMWLTVCTRPDLAQALGACARFSANP 2220          
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: UPI001D058071 (reverse transcriptase (RNA-dependent DNA polymerase) domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D058071)

HSP 1 Score: 50.4 bits (119), Expect = 2.060e-5
Identity = 29/79 (36.71%), Postives = 40/79 (50.63%), Query Frame = 1
Query:   28 QKAFAKNMIEQYNIS-ATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNPS 261
            Q A+ + +  ++ +S   L +P  P   +   KY      EE   Y+  VGSLM++ VMTR DIA A    AR   NPS
Sbjct:   97 QDAYVEKIARKFKLSDLKLRVPSIPIATIPLVKYNGQATKEEIKAYQERVGSLMYIAVMTRPDIARAAAQLARFLTNPS 175          
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 2.380e-5
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
            L ++Q+ + + + E+Y +     IP      L      EP     F   RALVGSL+W+ ++TR DIAN+ RA AR+S  P
Sbjct:  170 LTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEHPF---RALVGSLLWIALLTRPDIANSVRAVARYSGAP 247          
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A6V7LZ10_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7LZ10_9HYME)

HSP 1 Score: 48.5 bits (114), Expect = 2.400e-5
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   16 LEMNQKAFAKNMIEQYNI--SATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANA 225
            + M+QK   K++IE++ +  S  ++ P  PG  L + ++ E     +   YR LVGSLM+L V TR DIA+A
Sbjct:   10 IPMSQKGSLKDVIERFGMEDSGPVSTPIEPGTRLQKPQFEEELQEPKDLPYRELVGSLMYLAVSTRPDIAHA 81          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D05617A3.160e-736.67reverse transcriptase (RNA-dependent DNA polymeras... [more]
A0A6H5JR13_9PHAE1.090e-638.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWK8_9PHAE4.920e-637.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7K6V4_LASNI5.010e-633.73Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A6A4ZE01_9STRA9.960e-632.10Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A2D7NJ42_9PLAN1.310e-532.56CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A2D7NJ29_9PLAN1.370e-532.56DNA (cytosine-5-)-methyltransferase n=1 Tax=Planct... [more]
UPI001D0580712.060e-536.71reverse transcriptase (RNA-dependent DNA polymeras... [more]
A0A6H5JRZ9_9PHAE2.380e-537.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6V7LZ10_9HYME2.400e-538.89Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1076contigA-nodosum_M_contig1076:138916..139176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog28564.XP_002486217.1
PFAMsRVT_2,gag_pre-integrs,rve
Model size261
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.12e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,39W4B@33154|Opisthokonta,3P15U@4751|Fungi,3QR1M@4890|Ascomycota,20M77@147545|Eurotiomycetes,3SAAC@5042|Eurotiales
DescriptionEncoded by
Cds size240
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866463.0032113-UTR-A-nodosum_M_contig1076:138915..1389361680866463.0032113-UTR-A-nodosum_M_contig1076:138915..138936Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1076 138916..138936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866463.0225444-CDS-A-nodosum_M_contig1076:138936..1391761680866463.0225444-CDS-A-nodosum_M_contig1076:138936..139176Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1076 138937..139176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1076.3.1prot_A-nodosum_M_contig1076.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1076 138937..139176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1076.3.1

>prot_A-nodosum_M_contig1076.3.1 ID=prot_A-nodosum_M_contig1076.3.1|Name=mRNA_A-nodosum_M_contig1076.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
MNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRAL
VGSLMWLLVMTRSDIANAFRACARHSHNPS
back to top

mRNA from alignment at A-nodosum_M_contig1076:138916..139176+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1076.3.1 ID=mRNA_A-nodosum_M_contig1076.3.1|Name=mRNA_A-nodosum_M_contig1076.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig1076:138916..139176+ (Ascophyllum nodosum dioecious)
GGGACAAGGGAAATCCTCGAGATGAATCAGAAAGCGTTCGCGAAAAACAT GATTGAACAGTACAACATTTCCGCAACCTTGAACATTCCAGGGAGTCCAG GTGTAGATCTTGGGCGAAGAAAATATGGCGAGCCCGGGGGTAATGAGGAA TTTCCGAAGTACCGCGCTTTGGTTGGGAGTCTCATGTGGTTGTTAGTCAT GACTAGGTCTGATATCGCGAACGCATTTCGCGCCTGCGCACGTCATAGCC ATAACCCTAGT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1076:138916..139176+

>mRNA_A-nodosum_M_contig1076.3.1 ID=mRNA_A-nodosum_M_contig1076.3.1|Name=mRNA_A-nodosum_M_contig1076.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig1076:138916..139176+ (Ascophyllum nodosum dioecious)
ATGAATCAGAAAGCGTTCGCGAAAAACATGATTGAACAGTACAACATTTC
CGCAACCTTGAACATTCCAGGGAGTCCAGGTGTAGATCTTGGGCGAAGAA
AATATGGCGAGCCCGGGGGTAATGAGGAATTTCCGAAGTACCGCGCTTTG
GTTGGGAGTCTCATGTGGTTGTTAGTCATGACTAGGTCTGATATCGCGAA
CGCATTTCGCGCCTGCGCACGTCATAGCCATAACCCTAGT
back to top