mRNA_A-nodosum_M_contig1076.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: UPI001D05617A (reverse transcriptase (RNA-dependent DNA polymerase) domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D05617A) HSP 1 Score: 56.2 bits (134), Expect = 3.160e-7 Identity = 33/90 (36.67%), Postives = 48/90 (53.33%), Query Frame = 1
Query: 7 REILEMNQKAFAKNMIEQYNISAT--LNIPGSPGVDLGRRKYGEPGGNEEFPKYRAL----VGSLMWLLVMTRSDIANAFRACARHSHNP 258
R +E++Q+A+ + ++ YN+S N PG RR+ P PKY+A VGSLM+ ++ TRSDI + AC RH NP
Sbjct: 833 RRRIELSQRAYIEKILRTYNMSDCNPANTPGRRSAPASRRRLARP------PKYQAAYAKRVGSLMYAMLGTRSDICFSVGACCRHLANP 916
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 1.090e-6 Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
L ++Q+ + K + E+Y + IP L EP + E+P +RAL+GSL+W+ ++TR DIANA RA AR+ P
Sbjct: 422 LTISQETYTKELGERYGVEWGGGIPLPTTWRLWDSDVNEP--SVEYP-FRALIGSLLWVALLTRPDIANAVRAVARYCSEP 499
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 52.8 bits (125), Expect = 4.920e-6 Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
L ++Q+ + K + E++ + IP L EP + E+P +RAL+GSL+W+ ++TR DIANA RA AR+ P
Sbjct: 118 LTISQETYTKELGERHGVEWGGGIPLPTTWRLWDSDVNEP--SVEYP-FRALIGSLLWVALLTRPDIANAVRAVARYCSEP 195
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A0J7K6V4_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K6V4_LASNI) HSP 1 Score: 52.4 bits (124), Expect = 5.010e-6 Identity = 28/83 (33.73%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 16 LEMNQKAFAKNMIEQYNI--SATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
L +NQ +A+ +IE++ + + ++IP DL + +G G E P Y+ VGSL++L ++TR DIA A A ++++ +P
Sbjct: 138 LLVNQTKYARKIIERFRVEDAHAVSIPADQHQDLSLKHFGNKGKAIEVP-YKEAVGSLLYLAMVTRPDIAYAVSAVSQYAESP 219
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A6A4ZE01_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZE01_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 9.960e-6 Identity = 26/81 (32.10%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
L M Q A+ + ++E++ +S+ + D + E N + +YRA++GSL++L+V TR DIA+A + + H H+P
Sbjct: 1374 LTMTQDAYTEKVLERFKMSSCHPVTTPEVADQEDLWHDENQPNADQGEYRAMIGSLVYLMVCTRPDIAHAVQRLSCHLHDP 1454
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A2D7NJ42_9PLAN (CCHC-type domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D7NJ42_9PLAN) HSP 1 Score: 51.6 bits (122), Expect = 1.310e-5 Identity = 28/86 (32.56%), Postives = 46/86 (53.49%), Query Frame = 1
Query: 16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPK-----YRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
++++Q+ + + +++++ +P + K P +EE + YR +VGSLMWL V TR D+A A ACAR S NP
Sbjct: 172 IQIHQEHYIEEVLKKFQCEHWKVVPTPARDSITLHKGQSPTTDEERARMAKMPYRQVVGSLMWLTVCTRPDLAQALGACARFSANP 257
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A2D7NJ29_9PLAN (DNA (cytosine-5-)-methyltransferase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D7NJ29_9PLAN) HSP 1 Score: 51.6 bits (122), Expect = 1.370e-5 Identity = 28/86 (32.56%), Postives = 46/86 (53.49%), Query Frame = 1
Query: 16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPK-----YRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
++++Q+ + + +++++ +P + K P +EE + YR +VGSLMWL V TR D+A A ACAR S NP
Sbjct: 2135 IQIHQEHYIEEVLKKFQCEHWKVVPTPARDSITLHKGQSPTTDEERARMAKMPYRQVVGSLMWLTVCTRPDLAQALGACARFSANP 2220
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: UPI001D058071 (reverse transcriptase (RNA-dependent DNA polymerase) domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D058071) HSP 1 Score: 50.4 bits (119), Expect = 2.060e-5 Identity = 29/79 (36.71%), Postives = 40/79 (50.63%), Query Frame = 1
Query: 28 QKAFAKNMIEQYNIS-ATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNPS 261
Q A+ + + ++ +S L +P P + KY EE Y+ VGSLM++ VMTR DIA A AR NPS
Sbjct: 97 QDAYVEKIARKFKLSDLKLRVPSIPIATIPLVKYNGQATKEEIKAYQERVGSLMYIAVMTRPDIARAAAQLARFLTNPS 175
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE) HSP 1 Score: 50.8 bits (120), Expect = 2.380e-5 Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 1
Query: 16 LEMNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANAFRACARHSHNP 258
L ++Q+ + + + E+Y + IP L EP F RALVGSL+W+ ++TR DIAN+ RA AR+S P
Sbjct: 170 LTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEHPF---RALVGSLLWIALLTRPDIANSVRAVARYSGAP 247
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Match: A0A6V7LZ10_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7LZ10_9HYME) HSP 1 Score: 48.5 bits (114), Expect = 2.400e-5 Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 16 LEMNQKAFAKNMIEQYNI--SATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALVGSLMWLLVMTRSDIANA 225
+ M+QK K++IE++ + S ++ P PG L + ++ E + YR LVGSLM+L V TR DIA+A
Sbjct: 10 IPMSQKGSLKDVIERFGMEDSGPVSTPIEPGTRLQKPQFEEELQEPKDLPYRELVGSLMYLAVSTRPDIAHA 81 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1076.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1076.3.1 >prot_A-nodosum_M_contig1076.3.1 ID=prot_A-nodosum_M_contig1076.3.1|Name=mRNA_A-nodosum_M_contig1076.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp MNQKAFAKNMIEQYNISATLNIPGSPGVDLGRRKYGEPGGNEEFPKYRALback to top mRNA from alignment at A-nodosum_M_contig1076:138916..139176+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1076.3.1 ID=mRNA_A-nodosum_M_contig1076.3.1|Name=mRNA_A-nodosum_M_contig1076.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig1076:138916..139176+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1076:138916..139176+ >mRNA_A-nodosum_M_contig1076.3.1 ID=mRNA_A-nodosum_M_contig1076.3.1|Name=mRNA_A-nodosum_M_contig1076.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig1076:138916..139176+ (Ascophyllum nodosum dioecious)back to top |