mRNA_A-nodosum_M_contig1073.28.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1073.28.1
Unique NamemRNA_A-nodosum_M_contig1073.28.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1073.28.1 vs. uniprot
Match: A0A6H5JMA2_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA2_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.730e-32
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:    1 ATQELLRARSAQDRRVQEAAARAASELPATMRECFEEIEEFAYGG------GGGLTDEDVCALDTMAICGDRVGVVLAFLRRAKFDVREAKESIRRCCAWRRETE 297
            A +E+L  RSAQDR+VQ AAARA   LP T RECFE+++ FA+GG      G GL++E+V AL+T+AICGDR GVVLAFLR +KFDVR+AKES+RRCCAWR+E E
Sbjct:  310 AIREILGLRSAQDRKVQVAAARAVEALPPTQRECFEDVKAFAFGGANEGKEGAGLSEEEVEALNTVAICGDRDGVVLAFLRHSKFDVRKAKESMRRCCAWRKENE 414
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BLAST of mRNA_A-nodosum_M_contig1073.28.1 vs. uniprot
Match: D7FPB8_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB8_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 2.330e-31
Identity = 67/105 (63.81%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    1 ATQELLRARSAQDRRVQEAAARAASELPATMRECFEEIEEFAYGG------GGGLTDEDVCALDTMAICGDRVGVVLAFLRRAKFDVREAKESIRRCCAWRRETE 297
            A +E+L  RSAQDR+VQ AA RA   LP T RECFE+++ FA+GG      G GL++E+V AL+T+AICGDR GVVLAFLR +KFDVR+AKES+RRCCAWR+E E
Sbjct:  174 AIREILGLRSAQDRKVQVAATRAVEALPPTQRECFEDVKAFAFGGAIEGKEGAGLSEEEVEALNTVAICGDRDGVVLAFLRHSKFDVRKAKESMRRCCAWRKENE 278
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1073.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMA2_9PHAE6.730e-3264.76CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D7FPB8_ECTSI2.330e-3163.81CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1073contigA-nodosum_M_contig1073:268833..269129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPB8
PFAMsCAP_GLY,CRAL_TRIO
Model size297
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.82e-32
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-15_003980.2
Descriptionmacromolecule localization
Cds size297
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866461.3359027-CDS-A-nodosum_M_contig1073:268832..2691291680866461.3359027-CDS-A-nodosum_M_contig1073:268832..269129Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1073 268833..269129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1073.28.1prot_A-nodosum_M_contig1073.28.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1073 268833..269129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1073.28.1

>prot_A-nodosum_M_contig1073.28.1 ID=prot_A-nodosum_M_contig1073.28.1|Name=mRNA_A-nodosum_M_contig1073.28.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=99bp
ATQELLRARSAQDRRVQEAAARAASELPATMRECFEEIEEFAYGGGGGLT
DEDVCALDTMAICGDRVGVVLAFLRRAKFDVREAKESIRRCCAWRRETE
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mRNA from alignment at A-nodosum_M_contig1073:268833..269129-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1073.28.1 ID=mRNA_A-nodosum_M_contig1073.28.1|Name=mRNA_A-nodosum_M_contig1073.28.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:268833..269129- (Ascophyllum nodosum dioecious)
GCGACCCAAGAGCTCCTTCGTGCCCGAAGTGCCCAGGACCGGAGAGTACA
GGAGGCGGCCGCGCGCGCCGCATCAGAGCTTCCAGCGACCATGCGGGAGT
GCTTCGAGGAAATCGAGGAGTTCGCCTATGGTGGCGGGGGTGGCCTAACG
GACGAGGACGTTTGCGCTCTGGACACGATGGCGATCTGCGGCGACCGAGT
TGGGGTGGTACTTGCGTTCCTGAGGCGCGCGAAGTTCGACGTGCGCGAGG
CGAAGGAATCAATTCGTCGGTGCTGCGCTTGGAGGAGAGAGACAGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1073:268833..269129-

>mRNA_A-nodosum_M_contig1073.28.1 ID=mRNA_A-nodosum_M_contig1073.28.1|Name=mRNA_A-nodosum_M_contig1073.28.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:268833..269129- (Ascophyllum nodosum dioecious)
GCGACCCAAGAGCTCCTTCGTGCCCGAAGTGCCCAGGACCGGAGAGTACA
GGAGGCGGCCGCGCGCGCCGCATCAGAGCTTCCAGCGACCATGCGGGAGT
GCTTCGAGGAAATCGAGGAGTTCGCCTATGGTGGCGGGGGTGGCCTAACG
GACGAGGACGTTTGCGCTCTGGACACGATGGCGATCTGCGGCGACCGAGT
TGGGGTGGTACTTGCGTTCCTGAGGCGCGCGAAGTTCGACGTGCGCGAGG
CGAAGGAATCAATTCGTCGGTGCTGCGCTTGGAGGAGAGAGACAGAG
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