mRNA_A-nodosum_M_contig1073.26.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1073.26.1
Unique NamemRNA_A-nodosum_M_contig1073.26.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1073.26.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 8.060e-32
Identity = 60/89 (67.42%), Postives = 72/89 (80.90%), Query Frame = 2 
Query:    2 TTMFGTTSLLSFSGLVENVPIDAVVKVMYKYK-ESNASHTVVIGPNGFQMCSCLQVLRCGLPCRHTVAALVTELKRADEFKGESIHPRW 265
            TTMFGTTSL SF  LVE V ID +VKV+YK+K +    H V++GP GFQ+C+CLQ+LR GL CRH +AALVT LKR+DEFKG+SIHPRW
Sbjct:  411 TTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQSIHPRW 499
[Close]
BLAST of mRNA_A-nodosum_M_contig1073.26.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 7.390e-29
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 2 
Query:    5 TMFGTTSLLSFSGLVENVPIDAVVKVMYKY----KESNASHTVVIGPNGFQMCSCLQVLRCGLPCRHTVAALVTELKRADEFKGESIHPRW 265
            TM+GTTSL SF+ LV NV I+AVV+V YKY    +    SH VV+GP GFQ+C+CL+++RCGLPC H  AALVT L RA +F G SIHPRW
Sbjct:  457 TMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRW 547
[Close]
BLAST of mRNA_A-nodosum_M_contig1073.26.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 7.810e-29
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 2 
Query:    5 TMFGTTSLLSFSGLVENVPIDAVVKVMYKY----KESNASHTVVIGPNGFQMCSCLQVLRCGLPCRHTVAALVTELKRADEFKGESIHPRW 265
            TM+GTTSL SF+ LV NV I+AVV+V YKY    +    SH VV+GP GFQ+C+CL+++RCGLPC H  AALVT L RA +F G SIHPRW
Sbjct:  803 TMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRW 893
[Close]
BLAST of mRNA_A-nodosum_M_contig1073.26.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.110e-27
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 2 
Query:    2 TTMFGTTSLLSFSGLVENVPI---DAVVKVMYKYKESNASHTVVIGPNGFQMCSCLQVLRCGLPCRHTVAALVTELKRADEFKGESIHPRW 265
            T+MFGTT L SF  LV +V I   DAVVKV+YK ++    H VVIGP+GFQ+C+CLQ++R GL CRH +AALVTEL RA EFKGE IHPRW
Sbjct: 1236 TSMFGTTCLQSFYRLVAHVDIYMGDAVVKVVYKRRK--VGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGEFIHPRW 1324
[Close]
BLAST of mRNA_A-nodosum_M_contig1073.26.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.660e-25
Identity = 52/87 (59.77%), Postives = 58/87 (66.67%), Query Frame = 2 
Query:    5 TMFGTTSLLSFSGLVENVPIDAVVKVMYKYKESNASHTVVIGPNGFQMCSCLQVLRCGLPCRHTVAALVTELKRADEFKGESIHPRW 265
            T FG   L SF  LV NV IDA VKV YKY+    SH VV+GP+ FQMC+CLQV+R G  CRH +AALV    R  EF G SIHPRW
Sbjct:   65 TKFGAICLQSFFRLVANVKIDAGVKVSYKYRSPTVSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALVRS-NRDSEFAGASIHPRW 150
[Close]
BLAST of mRNA_A-nodosum_M_contig1073.26.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 9.440e-18
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 2 
Query:    5 TMFGTTSLLSFSGLVENVPIDAVVKVMYKYKESNASHTVVIGPNGFQMCSCLQVLRCGLPCRHTVAALVTELKRADE---------FKGESIHPRW 265
            TM+  TSL +F  L+E++PI+ VV V YK+  +  SH VV GP+ F +CSCLQ+LR  LPCRH  A LV  + R  E         F G  +H RW
Sbjct:  923 TMWARTSLSAFLDLIEDIPIELVVAVRYKWTANRPSHLVVFGPHNFHLCSCLQLLRRRLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRW 1018
[Close]
BLAST of mRNA_A-nodosum_M_contig1073.26.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.390e-17
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 2 
Query:    5 TMFGTTSLLSFSGLVENVPIDAVVKVMYKYKESNASHTVVIGPNGFQMCSCLQVLRCGLPCRHTVAALVTELKRADE---------FKGESIHPRW 265
            TM+  T L +F  L+E++PI+ VV V YK+  +  SH VV G + F +CSCLQ+LRCGLPCR   A LV  + R  E         F G  +H RW
Sbjct:  513 TMWARTLLSAFLDLIEDIPIELVVAVRYKWTANRPSHLVVFGHHNFHLCSCLQLLRCGLPCRDYFAVLVNLIGRTGESDEMAFTHTFNGSCVHNRW 608
[Close]
BLAST of mRNA_A-nodosum_M_contig1073.26.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.280e-17
Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = 2 
Query:    5 TMFGTTSLLSFSGLVENVPIDAVVKVMYKYKESNASHTVVIGPNGFQMCSCLQVLRCGLPCRHTVAALVTELKRADE---------FKGESIHPRW 265
            TM+   SL +F  L+E++PI  VV V Y    +  SH VV GP+ F +CSCLQ+LR GLPCRH  A LV  + R  E         FKG  +H RW
Sbjct: 1146 TMWARASLSAFLDLIEDIPIQLVVAVRYMRAANRPSHLVVFGPHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFIHTFKGACVHNRW 1241
[Close]
BLAST of mRNA_A-nodosum_M_contig1073.26.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.660e-16
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 2 
Query:    5 TMFGTTSLLSFSGLVENVPIDAVVKVMYKYKESNASHTVVIGPNGFQMCSCLQVLRCGLPCRHTVAALVTELKRADE---------FKGESIHPRW 265
            TM+  TSL +F  L+E++PI+  V V YK   +  SH VV G + F +CSCLQ+LR GLPCRH  A LV  + R  E         F G  +H RW
Sbjct:  236 TMWARTSLSAFLDLIEDIPIELFVAVRYKRAANRPSHLVVFGLHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRW 331
[Close]
BLAST of mRNA_A-nodosum_M_contig1073.26.1 vs. uniprot
Match: A0A6H5KTX9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 9.070e-16
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 2 
Query:    2 TTMFGTTSLLSFSGLVENVPIDAVVKVMYKYKESNASHTVVIGPNGFQMCSCLQVLRCGLPCRHTVAALVTELKRA-----DEFKGESIHPRW 265
            TT +  TS  +F  L+ NVPI   V V Y+   +  SH +V GPN F +CSCL++LR GLPCRH  AAL+  L         +F G S+H RW
Sbjct:  181 TTPWARTSSSTFLELLGNVPIHLAVLVRYQLTRTKQSHIIVFGPNNFHLCSCLKLLRLGLPCRHYFAALLRFLGGVYRGIRHDFHGSSVHNRW 273
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1073.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FLF6_ECTSI8.060e-3267.42Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5JEJ0_9PHAE7.390e-2961.54SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE7.810e-2961.54SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE6.110e-2764.84SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K6K4_9PHAE5.660e-2559.77SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBY4_9PHAE9.440e-1845.83SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KB76_9PHAE2.390e-1744.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9T1_9PHAE3.280e-1745.83SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L372_9PHAE2.660e-1644.79SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KTX9_9PHAE9.070e-1645.16SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1073contigA-nodosum_M_contig1073:263460..263727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLF6
PFAMsMULE
Model size268
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.24e-32
EggNOG OGs2CMGX@1|root,2QQB8@2759|Eukaryota
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866461.2992508-CDS-A-nodosum_M_contig1073:263459..2637201680866461.2992508-CDS-A-nodosum_M_contig1073:263459..263720Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1073 263460..263720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866461.3087404-UTR-A-nodosum_M_contig1073:263720..2637271680866461.3087404-UTR-A-nodosum_M_contig1073:263720..263727Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1073 263721..263727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1073.26.1prot_A-nodosum_M_contig1073.26.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1073 263460..263720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1073.26.1

>prot_A-nodosum_M_contig1073.26.1 ID=prot_A-nodosum_M_contig1073.26.1|Name=mRNA_A-nodosum_M_contig1073.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=87bp
MFGTTSLLSFSGLVENVPIDAVVKVMYKYKESNASHTVVIGPNGFQMCSC
LQVLRCGLPCRHTVAALVTELKRADEFKGESIHPRW*
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mRNA from alignment at A-nodosum_M_contig1073:263460..263727-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1073.26.1 ID=mRNA_A-nodosum_M_contig1073.26.1|Name=mRNA_A-nodosum_M_contig1073.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=268bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:263460..263727- (Ascophyllum nodosum dioecious)
CACGACCATGTTCGGAACAACATCGTTGCTCTCGTTTTCCGGGCTCGTTG
AAAACGTGCCAATCGATGCGGTGGTTAAAGTCATGTACAAATACAAGGAG
TCGAATGCCAGCCATACTGTTGTCATCGGACCCAATGGTTTCCAAATGTG
TAGCTGCTTGCAGGTTTTGAGGTGCGGGCTACCGTGCAGGCACACAGTAG
CAGCACTCGTAACCGAGCTGAAACGGGCCGATGAATTTAAAGGGGAGTCC
ATTCACCCCCGGTGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1073:263460..263727-

>mRNA_A-nodosum_M_contig1073.26.1 ID=mRNA_A-nodosum_M_contig1073.26.1|Name=mRNA_A-nodosum_M_contig1073.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:263460..263727- (Ascophyllum nodosum dioecious)
ATGTTCGGAACAACATCGTTGCTCTCGTTTTCCGGGCTCGTTGAAAACGT
GCCAATCGATGCGGTGGTTAAAGTCATGTACAAATACAAGGAGTCGAATG
CCAGCCATACTGTTGTCATCGGACCCAATGGTTTCCAAATGTGTAGCTGC
TTGCAGGTTTTGAGGTGCGGGCTACCGTGCAGGCACACAGTAGCAGCACT
CGTAACCGAGCTGAAACGGGCCGATGAATTTAAAGGGGAGTCCATTCACC
CCCGGTGGTGA
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