mRNA_A-nodosum_M_contig1073.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1073.2.1
Unique NamemRNA_A-nodosum_M_contig1073.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1073.2.1 vs. uniprot
Match: A0A6H5L144_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L144_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.710e-6
Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:   25 ERIKTTIRERQLGFAGGLIRQGDSRLSKRVMIWRLAVQGPKRGDRPATSWISCLQKNLEAFGAIQRKGKGRKWVAYGAIAKDGRDWMTAVK 297
            E I+ T+R+R+L FAG ++R GD+RL KR+++  +A     RG + +  W+  L ++L AFG  + K  GR    +   AKD   W   ++
Sbjct:  785 ETIEATVRKRRLCFAGFVMRMGDNRLPKRMLLGAMAGGTGYRGGQES-DWVYRLGEDLVAFGMKEEKEGGR----WKESAKDQEAWYDKIE 870
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BLAST of mRNA_A-nodosum_M_contig1073.2.1 vs. uniprot
Match: A0A6H5JP02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP02_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.060e-6
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:   25 ERIKTTIRERQLGFAGGLIRQGDSRLSKRVMIWRLAVQGPKRGDRPATSWISCLQKNLEAFGAIQRKGKGRKWVAYGAIAKDGRDWMTAVK 297
            E I+ T+R+R+L FAG ++R GD+RL K +++  +A     RG + +  W+S L ++L AF     K +G KW      AKD   W   V+
Sbjct:  654 ETIEATVRKRRLCFAGFIMRMGDNRLPKHMLLGAMAGGVGYRGGQES-DWVSRLGEDLVAFNMGDEK-EGGKWKE---SAKDPEVWYNKVE 739
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1073.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L144_9PHAE1.710e-635.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP02_9PHAE8.060e-636.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1073contigA-nodosum_M_contig1073:40272..40568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10224.XP_006822761.1
PFAMsRVT_1
Model size297
Max annot lvl33208|Metazoa
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K13506
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.09e-06
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa
EC2.3.1.15
Descriptionprotein kinase activity
Cds size297
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866460.533294-CDS-A-nodosum_M_contig1073:40271..405681680866460.533294-CDS-A-nodosum_M_contig1073:40271..40568Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1073 40272..40568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1073.2.1prot_A-nodosum_M_contig1073.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1073 40272..40568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1073.2.1

>prot_A-nodosum_M_contig1073.2.1 ID=prot_A-nodosum_M_contig1073.2.1|Name=mRNA_A-nodosum_M_contig1073.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=99bp
EVLKRTGSERIKTTIRERQLGFAGGLIRQGDSRLSKRVMIWRLAVQGPKR
GDRPATSWISCLQKNLEAFGAIQRKGKGRKWVAYGAIAKDGRDWMTAVK
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mRNA from alignment at A-nodosum_M_contig1073:40272..40568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1073.2.1 ID=mRNA_A-nodosum_M_contig1073.2.1|Name=mRNA_A-nodosum_M_contig1073.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:40272..40568- (Ascophyllum nodosum dioecious)
GAGGTTCTCAAGAGGACCGGCTCCGAACGCATCAAAACGACAATTCGGGA
GCGCCAACTTGGGTTCGCCGGGGGTCTTATTCGACAAGGTGACTCAAGGC
TCTCAAAGCGAGTCATGATTTGGCGGCTGGCGGTGCAAGGGCCCAAGCGA
GGAGATCGACCGGCGACGTCTTGGATAAGCTGCCTCCAGAAAAACCTCGA
GGCCTTCGGGGCGATCCAGCGCAAAGGCAAAGGACGGAAGTGGGTCGCAT
ACGGAGCTATTGCCAAAGATGGACGGGATTGGATGACGGCTGTAAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1073:40272..40568-

>mRNA_A-nodosum_M_contig1073.2.1 ID=mRNA_A-nodosum_M_contig1073.2.1|Name=mRNA_A-nodosum_M_contig1073.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:40272..40568- (Ascophyllum nodosum dioecious)
GAGGTTCTCAAGAGGACCGGCTCCGAACGCATCAAAACGACAATTCGGGA
GCGCCAACTTGGGTTCGCCGGGGGTCTTATTCGACAAGGTGACTCAAGGC
TCTCAAAGCGAGTCATGATTTGGCGGCTGGCGGTGCAAGGGCCCAAGCGA
GGAGATCGACCGGCGACGTCTTGGATAAGCTGCCTCCAGAAAAACCTCGA
GGCCTTCGGGGCGATCCAGCGCAAAGGCAAAGGACGGAAGTGGGTCGCAT
ACGGAGCTATTGCCAAAGATGGACGGGATTGGATGACGGCTGTAAAG
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