mRNA_A-nodosum_M_contig1073.17.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5JHK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK9_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 9.790e-10 Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 2
Query: 332 AGFVARMEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQS----TTAAQDEGEWRRTAEQGVEHFMAKW 565
AGFV RMED RLPK ++ GEM G G GGQE +W++ ++L AF + ++ +A+D W E G FM KW
Sbjct: 115 AGFVMRMEDSRLPKRMLLGEMARGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMRKW 196
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 2.230e-9 Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 2
Query: 341 VARMEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQS----TTAAQDEGEWRRTAEQGVEHFMAKW 565
+ RMED RLPK ++ GEM GGAG GGQE +W+ ++L AFG+ ++ +A+D+ W E G FM KW
Sbjct: 141 IMRMEDNRLPKRMLLGEMAGGAGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 219
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5JS41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS41_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 1.040e-7 Identity = 40/101 (39.60%), Postives = 47/101 (46.53%), Query Frame = 2
Query: 326 LVAGFVARMEDKRLPKYVMFGEMVGGAGCV-GGQEKEWMACFLDNLRA--------------FGINADQSTTAAQDEG--EWRRTAEQGVEHFMAKWIVAE 577
LVAG VAR D RLPK +MFGE+VGG G E+ W+ C D+L+ FGI AA+ EG W QG FMA W E
Sbjct: 2 LVAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMIEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAGRFMASWHKGE 102
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: UPI00035A230D (uncharacterized protein LOC101847595 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A230D) HSP 1 Score: 63.2 bits (152), Expect = 1.630e-7 Identity = 36/89 (40.45%), Postives = 47/89 (52.81%), Query Frame = 2
Query: 332 AGFVARMEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQSTTAAQDEGEWRRTAEQGVEHFMAKWIVAEKAKARLR 598
AG V RM D RLPK +M+GE++ G V GQ+K + C +L+ GI D T AQD WR +G + AK I K K +R
Sbjct: 524 AGHVIRMADSRLPKQLMYGELLHGKRSVRGQKKRFKDCLKVSLKELGILNDLCETLAQDRPTWRCKLTKGAKAAEAKRIAEAKQKRNVR 612
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.100e-7 Identity = 42/112 (37.50%), Postives = 52/112 (46.43%), Query Frame = 2
Query: 314 QEADLVAGFVARMEDKRLPKYVMFGEMVGGAGCV-GGQEKEWMACFLDNLRAF--------------GINADQSTTAAQDEG--EWRRTAEQGVEHFMAKWIVAEKAKARLR 598
Q L AG +AR D RLPK +MFGE+VGG G E+ W+ C D+L+ F GI AA+ EG W QG E FMA W E+ +R R
Sbjct: 57 QRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQR 168
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 4.070e-7 Identity = 43/112 (38.39%), Postives = 52/112 (46.43%), Query Frame = 2
Query: 314 QEADLVAGFVARMEDKRLPKYVMFGEMVGGAGCV-GGQEKEWMACFLDNLRAF--------------GINADQSTTAAQDEG--EWRRTAEQGVEHFMAKWIVAEKAKARLR 598
Q L AG VAR D RLPK +MFGE+VGG G E+ W+ C D+L+ F GI AA+ EG W QG E FMA W E+ +R R
Sbjct: 584 QRRVLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQR 695
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 4.180e-7 Identity = 41/108 (37.96%), Postives = 54/108 (50.00%), Query Frame = 2
Query: 326 LVAGFVARMEDKRLPKYVMFGEMVGGAGC-VGGQEKEWMACFLDNLRAF----GINADQSTT----------AAQDEG--EWRRTAEQGVEHFMAKWIVAEKAKARLR 598
L AG VAR D RLPK +MFGE+VGG G G E+ W+ C D+++ F G D+ + AA+ EG W QG E FMA W ++ +R R
Sbjct: 650 LFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQR 757
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 5.160e-7 Identity = 42/108 (38.89%), Postives = 51/108 (47.22%), Query Frame = 2
Query: 326 LVAGFVARMEDKRLPKYVMFGEMVGGAGCV-GGQEKEWMACFLDNLRAF--------------GINADQSTTAAQDEG--EWRRTAEQGVEHFMAKWIVAEKAKARLR 598
L AG VAR D RLPK +MFGE+VGG G E+ W+ C D+L+ F GI AA+ EG W QG E FMA W E+ +R R
Sbjct: 482 LFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQR 589
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: UPI00165228C0 (uncharacterized protein LOC118478942 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165228C0) HSP 1 Score: 57.4 bits (137), Expect = 8.200e-7 Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = 2
Query: 350 MEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQSTTAAQDEGEWRRTAEQGVEHFMAKWIVAEKAKARLR 598
M D RLPK +M+GE++ G VGGQ+K + C +L+ GI D AQD WR +G + AK I K K +R
Sbjct: 1 MADSRLPKQLMYGELLHGKRSVGGQKKRFKDCLKISLKELGILNDSWEMLAQDRPSWRCKLTKGAKAAEAKRIAEAKQKHNVR 83
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.090e-6 Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 2
Query: 332 AGFVARMEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQSTTAAQDEGEWRRTA 532
AGFV RMED RLPK ++ GEM GG GGQE W++ ++L AF + ++ + GEW+ +A
Sbjct: 120 AGFVMRMEDNRLPKRMLLGEMAGGGEYRGGQESHWVSRVGEDLVAFNMGDEK------EGGEWKESA 180 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1073.17.1 >prot_A-nodosum_M_contig1073.17.1 ID=prot_A-nodosum_M_contig1073.17.1|Name=mRNA_A-nodosum_M_contig1073.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=115bp MEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQSTTAback to top mRNA from alignment at A-nodosum_M_contig1073:93730..95623+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1073.17.1 ID=mRNA_A-nodosum_M_contig1073.17.1|Name=mRNA_A-nodosum_M_contig1073.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1894bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:93730..95623+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1073:93730..95623+ >mRNA_A-nodosum_M_contig1073.17.1 ID=mRNA_A-nodosum_M_contig1073.17.1|Name=mRNA_A-nodosum_M_contig1073.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=345bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:93730..95623+ (Ascophyllum nodosum dioecious)back to top |