mRNA_A-nodosum_M_contig1073.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1073.17.1
Unique NamemRNA_A-nodosum_M_contig1073.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5JHK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 9.790e-10
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 2
Query:  332 AGFVARMEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQS----TTAAQDEGEWRRTAEQGVEHFMAKW 565
            AGFV RMED RLPK ++ GEM  G G  GGQE +W++   ++L AF +  ++       +A+D   W    E G   FM KW
Sbjct:  115 AGFVMRMEDSRLPKRMLLGEMARGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMRKW 196          
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.230e-9
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 2
Query:  341 VARMEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQS----TTAAQDEGEWRRTAEQGVEHFMAKW 565
            + RMED RLPK ++ GEM GGAG  GGQE +W+    ++L AFG+  ++       +A+D+  W    E G   FM KW
Sbjct:  141 IMRMEDNRLPKRMLLGEMAGGAGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 219          
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5JS41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS41_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-7
Identity = 40/101 (39.60%), Postives = 47/101 (46.53%), Query Frame = 2
Query:  326 LVAGFVARMEDKRLPKYVMFGEMVGGAGCV-GGQEKEWMACFLDNLRA--------------FGINADQSTTAAQDEG--EWRRTAEQGVEHFMAKWIVAE 577
            LVAG VAR  D RLPK +MFGE+VGG     G  E+ W+ C  D+L+               FGI       AA+ EG   W     QG   FMA W   E
Sbjct:    2 LVAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMIEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAGRFMASWHKGE 102          
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: UPI00035A230D (uncharacterized protein LOC101847595 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A230D)

HSP 1 Score: 63.2 bits (152), Expect = 1.630e-7
Identity = 36/89 (40.45%), Postives = 47/89 (52.81%), Query Frame = 2
Query:  332 AGFVARMEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQSTTAAQDEGEWRRTAEQGVEHFMAKWIVAEKAKARLR 598
            AG V RM D RLPK +M+GE++ G   V GQ+K +  C   +L+  GI  D   T AQD   WR    +G +   AK I   K K  +R
Sbjct:  524 AGHVIRMADSRLPKQLMYGELLHGKRSVRGQKKRFKDCLKVSLKELGILNDLCETLAQDRPTWRCKLTKGAKAAEAKRIAEAKQKRNVR 612          
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.100e-7
Identity = 42/112 (37.50%), Postives = 52/112 (46.43%), Query Frame = 2
Query:  314 QEADLVAGFVARMEDKRLPKYVMFGEMVGGAGCV-GGQEKEWMACFLDNLRAF--------------GINADQSTTAAQDEG--EWRRTAEQGVEHFMAKWIVAEKAKARLR 598
            Q   L AG +AR  D RLPK +MFGE+VGG     G  E+ W+ C  D+L+ F              GI       AA+ EG   W     QG E FMA W   E+  +R R
Sbjct:   57 QRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQR 168          
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.070e-7
Identity = 43/112 (38.39%), Postives = 52/112 (46.43%), Query Frame = 2
Query:  314 QEADLVAGFVARMEDKRLPKYVMFGEMVGGAGCV-GGQEKEWMACFLDNLRAF--------------GINADQSTTAAQDEG--EWRRTAEQGVEHFMAKWIVAEKAKARLR 598
            Q   L AG VAR  D RLPK +MFGE+VGG     G  E+ W+ C  D+L+ F              GI       AA+ EG   W     QG E FMA W   E+  +R R
Sbjct:  584 QRRVLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQR 695          
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.180e-7
Identity = 41/108 (37.96%), Postives = 54/108 (50.00%), Query Frame = 2
Query:  326 LVAGFVARMEDKRLPKYVMFGEMVGGAGC-VGGQEKEWMACFLDNLRAF----GINADQSTT----------AAQDEG--EWRRTAEQGVEHFMAKWIVAEKAKARLR 598
            L AG VAR  D RLPK +MFGE+VGG G   G  E+ W+ C  D+++ F    G   D+ +           AA+ EG   W     QG E FMA W   ++  +R R
Sbjct:  650 LFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQR 757          
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.160e-7
Identity = 42/108 (38.89%), Postives = 51/108 (47.22%), Query Frame = 2
Query:  326 LVAGFVARMEDKRLPKYVMFGEMVGGAGCV-GGQEKEWMACFLDNLRAF--------------GINADQSTTAAQDEG--EWRRTAEQGVEHFMAKWIVAEKAKARLR 598
            L AG VAR  D RLPK +MFGE+VGG     G  E+ W+ C  D+L+ F              GI       AA+ EG   W     QG E FMA W   E+  +R R
Sbjct:  482 LFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQR 589          
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: UPI00165228C0 (uncharacterized protein LOC118478942 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165228C0)

HSP 1 Score: 57.4 bits (137), Expect = 8.200e-7
Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = 2
Query:  350 MEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQSTTAAQDEGEWRRTAEQGVEHFMAKWIVAEKAKARLR 598
            M D RLPK +M+GE++ G   VGGQ+K +  C   +L+  GI  D     AQD   WR    +G +   AK I   K K  +R
Sbjct:    1 MADSRLPKQLMYGELLHGKRSVGGQKKRFKDCLKISLKELGILNDSWEMLAQDRPSWRCKLTKGAKAAEAKRIAEAKQKHNVR 83          
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.090e-6
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 2
Query:  332 AGFVARMEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQSTTAAQDEGEWRRTA 532
            AGFV RMED RLPK ++ GEM GG    GGQE  W++   ++L AF +  ++      + GEW+ +A
Sbjct:  120 AGFVMRMEDNRLPKRMLLGEMAGGGEYRGGQESHWVSRVGEDLVAFNMGDEK------EGGEWKESA 180          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1073.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHK9_9PHAE9.790e-1041.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMA1_9PHAE2.230e-941.77Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JS41_9PHAE1.040e-739.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00035A230D1.630e-740.45uncharacterized protein LOC101847595 n=1 Tax=Aplys... [more]
A0A6H5KF72_9PHAE2.100e-737.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKI4_9PHAE4.070e-738.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX7_9PHAE4.180e-737.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE5.160e-738.89Reverse transcriptase domain-containing protein n=... [more]
UPI00165228C08.200e-738.55uncharacterized protein LOC118478942 n=1 Tax=Aplys... [more]
A0A6H5L6M5_9PHAE1.090e-643.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1073contigA-nodosum_M_contig1073:93730..95623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6500.XP_005092354.1
PFAMsRVT_1
Model size870
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.13e-09
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria
DescriptionRibonuclease H protein
Cds size345
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866460.7958267-UTR-A-nodosum_M_contig1073:93729..938091680866460.7958267-UTR-A-nodosum_M_contig1073:93729..93809Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1073 93730..93809 +
1680866460.8059294-UTR-A-nodosum_M_contig1073:94335..945361680866460.8059294-UTR-A-nodosum_M_contig1073:94335..94536Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1073 94336..94536 +
1680866460.8149905-UTR-A-nodosum_M_contig1073:95034..951021680866460.8149905-UTR-A-nodosum_M_contig1073:95034..95102Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1073 95035..95102 +
1680866460.8372974-UTR-A-nodosum_M_contig1073:95447..956231680866460.8372974-UTR-A-nodosum_M_contig1073:95447..95623Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1073 95448..95623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866460.823679-CDS-A-nodosum_M_contig1073:95102..954471680866460.823679-CDS-A-nodosum_M_contig1073:95102..95447Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1073 95103..95447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1073.17.1prot_A-nodosum_M_contig1073.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1073 95103..95447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1073.17.1

>prot_A-nodosum_M_contig1073.17.1 ID=prot_A-nodosum_M_contig1073.17.1|Name=mRNA_A-nodosum_M_contig1073.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=115bp
MEDKRLPKYVMFGEMVGGAGCVGGQEKEWMACFLDNLRAFGINADQSTTA
AQDEGEWRRTAEQGVEHFMAKWIVAEKAKARLRHAVVCSNVTRRTKKRIA
QGKRARAGSLALVD*
back to top

mRNA from alignment at A-nodosum_M_contig1073:93730..95623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1073.17.1 ID=mRNA_A-nodosum_M_contig1073.17.1|Name=mRNA_A-nodosum_M_contig1073.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1894bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:93730..95623+ (Ascophyllum nodosum dioecious)
ATATTTCCCCCCCCTAACTAGGTGGATACTCAGAAGGTTTAGATCCGTTC AGAGTTTCTTTAAACTCGGTCTCAAGGAAGGTAAGAAAAGGGTCTGTGCG TAAGACTATTCGACCTTGTTAAAATTGAAGTTGTGTGCGTTGGCGTTCTT CGCGGCGTCCGCATCTTTGGTGGTTGGGATTACGTGATACCATCAATGTA GCTAAGTAAATGTTGTCTAAGTAACTATGTTTTCGTCAGTAGAGGCGCGG TATTTTTAGGCTAAGTCTTATATTGTGAGATACAAAATAAGTACTCGAGT ATTAATAATACCAATATAAGAATAGTGTTTGTCTCTTCTTCTGTGTGTAC GTTGGCGTTTTCTGCGGGATCTCGTGGATCGTTGCCGCATTGTCGGCGCC GTTGCCGTAACGGATGTGTGACGACGTGCAGTATCATCAACACGTCGAAG AAATCCTGGCTCTCTTTCTTTGGGTGGAAAATCGTCTCAACTTCCTCCGT GTGTGATGGTTGCGATTGGCATGCTGCGAAGGGTGTCAACAAACGCTCAC CACGTCTCTCTCGGCGTTTCGTTCTGGAATAAAACTGCCTGCACTCTTTG TCTCAGATCGTGAGGAGTCCCCTTAGCGAGAAAAGCTGCTGGGGTGAATG ATTCAAGTAGATCTTAGAACTCCTACGCTGACGTGCTTTGGGCCCAGGGG ATCGGCGCCACTGCATCTCCATGAAGTAGCAGCTTGACTCATTCATGTGC ACTATACTTGGGAAACACGCGCGTATCGCTGTTTGGTGACGTGTGTAACA GTTTGGGGTGAGGGGTGCGTTAATGGCGACGAGACTTGACTATAATAGCG ACGATGATAAGTGATTTAGAAGAAATAGCGTCTTCCTTTTGTTCTTCGTT TCCTGCATAATCATCGTAAAGATTTTGCGTGTTGCATCATTGCTCTGTAC ATACATGATGCGAAGTGTACACGTAGCTGTCAACTGTTGTTTAAAGAAAA ATTAGAACGCACCTAGACCCTGTTTTTCGAGAGGAAACAAATATTTTTTG AGGCCAACGGACCGTTTGCCGACGCCTGGATTGGATCGCATTTAATTTGT CAGTTTTTACGACCAGACTTCTCGCTTTTGCCGTACGAGTATGTTTATCT AAACTAAGACATCCGAGACAATTGAATCGAACCTTTGGAAACCCATATTC GAGTATATAGATTTTACTATTTCAGAGGGAGAATCATTATCTTGATTCTG CATGGAAGTTGATACGCGTTACCACCCGATTTCCTATCTGGACACGCTTA TCAAGACGGGAAGTGAGAGCATCGAGGCGACTTTTTGCAGGAGGCGGATC TTGTTGCGGGGTTTGTGGCGCGCATGGAGGATAAGAGACTGCCGAAGTAC GTGATGTTCGGAGAAATGGTGGGGGGCGCGGGCTGTGTGGGGGGCCAGGA AAAAGAGTGGATGGCGTGTTTCCTGGACAATCTCAGAGCTTTCGGCATCA ACGCCGACCAGTCAACGACTGCGGCCCAGGACGAGGGGGAATGGCGCAGG ACGGCAGAACAAGGGGTGGAACATTTCATGGCGAAATGGATCGTTGCAGA GAAAGCCAAGGCTAGACTACGGCATGCAGTGGTATGCTCGAACGTGACGA GAAGGACCAAGAAAAGGATAGCCCAAGGCAAGCGGGCTCGTGCTGGTTCG CTCGCCCTTGTTGACTAGCCACAAGTGGCGCGAGTTTGTGTCCTCCGGGC GTTTGGTTTGCAGATGCCATGGCGTCTTTCTCTGGTGTTAAATTTGTTTT ATTTTGCTTCGTTTTCGTCTTTATGCTTTCGTTGAAGCCGCGACCCGTCG TTCGATCGTCCTTCGATATGCAGGCGTCCCGATAGCCACACGTG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1073:93730..95623+

>mRNA_A-nodosum_M_contig1073.17.1 ID=mRNA_A-nodosum_M_contig1073.17.1|Name=mRNA_A-nodosum_M_contig1073.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=345bp|location=Sequence derived from alignment at A-nodosum_M_contig1073:93730..95623+ (Ascophyllum nodosum dioecious)
ATGGAGGATAAGAGACTGCCGAAGTACGTGATGTTCGGAGAAATGGTGGG
GGGCGCGGGCTGTGTGGGGGGCCAGGAAAAAGAGTGGATGGCGTGTTTCC
TGGACAATCTCAGAGCTTTCGGCATCAACGCCGACCAGTCAACGACTGCG
GCCCAGGACGAGGGGGAATGGCGCAGGACGGCAGAACAAGGGGTGGAACA
TTTCATGGCGAAATGGATCGTTGCAGAGAAAGCCAAGGCTAGACTACGGC
ATGCAGTGGTATGCTCGAACGTGACGAGAAGGACCAAGAAAAGGATAGCC
CAAGGCAAGCGGGCTCGTGCTGGTTCGCTCGCCCTTGTTGACTAG
back to top