mRNA_A-nodosum_M_contig10720.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10720.4.1
Unique NamemRNA_A-nodosum_M_contig10720.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10720.4.1 vs. uniprot
Match: D7G191_ECTSI (Alpha-1,3-glucosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G191_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.220e-14
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   10 GDATLSARWAIVIGRVLGLGVAVALTFAFLWAPFCIF------SGAASGGTYLSSLGQVLVRMFPFSRGLFEDKVANV 225
            G AT   R + V+ RVLGLG  V +TF  LWAPFC+        G+ +    LS++GQV VR+FPFSRGLFEDKVAN+
Sbjct:  260 GTATSLNRLSGVLRRVLGLGSVVIITFMVLWAPFCLLRDDDSEDGSDAQSGCLSAMGQVSVRLFPFSRGLFEDKVANL 337          
BLAST of mRNA_A-nodosum_M_contig10720.4.1 vs. uniprot
Match: A0A482S0G5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0G5_9ARCH)

HSP 1 Score: 70.5 bits (171), Expect = 1.840e-12
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   34 WAIVIGRVLGLGVAVALTFAFLWAPFCIFSGAASGGTYLSSLGQVLVRMFPFSRGLFEDKVANV 225
            W+    ++  +G+ V  TFA LW PFC++  A    T LSSLG VL R FPFSRG+FEDKVAN+
Sbjct:  226 WSAKFSKLAVIGLTVLATFAVLWVPFCLWPSAEE--TCLSSLGHVLSRQFPFSRGIFEDKVANI 287          
BLAST of mRNA_A-nodosum_M_contig10720.4.1 vs. uniprot
Match: A0A8K1CIN0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIN0_PYTOL)

HSP 1 Score: 69.3 bits (168), Expect = 4.700e-12
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   52 RVLGLGVAVALTFAFLWAPFCIFSGAASGGTYLSSLGQVLVRMFPFSRGLFEDKVANV 225
             ++ L VAV  TFA +W PFC++  A  G T  SS+GQVL R+FPF+RGLFEDKVANV
Sbjct:  256 HLVKLAVAVIATFAVMWLPFCLY--AREGETCASSVGQVLHRVFPFARGLFEDKVANV 311          
BLAST of mRNA_A-nodosum_M_contig10720.4.1 vs. uniprot
Match: A0A7S3H9F0_9STRA (Alpha-1,3-glucosyltransferase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9F0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.420e-12
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   64 LGVAVALTFAFLWAPFCIFSGAASGGTYLSSLGQVLVRMFPFSRGLFEDKVANV 225
            LG+ V  TF  LWAPFC+F       T L+SLGQVL R FPFSRG+FEDKVAN+
Sbjct:  236 LGITVISTFGLLWAPFCVFHSPED--TCLTSLGQVLHRQFPFSRGIFEDKVANL 287          
BLAST of mRNA_A-nodosum_M_contig10720.4.1 vs. uniprot
Match: G4YVW2_PHYSP (Alpha-1,3-glucosyltransferase n=4 Tax=Phytophthora TaxID=4783 RepID=G4YVW2_PHYSP)

HSP 1 Score: 67.8 bits (164), Expect = 1.630e-11
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   52 RVLGLGVAVALTFAFLWAPFCIFSGAASGGTYLSSLGQVLVRMFPFSRGLFEDKVAN 222
             ++ L VAV +TFA +W+PFC+++  ++G T LS++ QV+ R+FPF RGLFEDKVAN
Sbjct:  245 HLIKLAVAVIVTFALMWSPFCVYT--STGETCLSTMAQVVHRIFPFGRGLFEDKVAN 299          
BLAST of mRNA_A-nodosum_M_contig10720.4.1 vs. uniprot
Match: A0A7S2KY17_9STRA (Alpha-1,3-glucosyltransferase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KY17_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.280e-11
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   49 GRVLGLGVAVALTFAFLWAPFCIFSGAA-SGGTYLSSLGQVLVRMFPFSRGLFEDKVANV 225
            G+   LGV+V LTFA LW PF I+  A+ S   +L  + QVL R+FPF RGLFEDKVAN+
Sbjct:  186 GKFCALGVSVILTFAVLWLPFAIYPRASLSTKFHLDGISQVLKRLFPFQRGLFEDKVANI 245          
BLAST of mRNA_A-nodosum_M_contig10720.4.1 vs. uniprot
Match: A0A1V9YSV9_9STRA (Alpha-1,3-glucosyltransferase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YSV9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.760e-10
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   52 RVLGLGVAVALTFAFLWAPFCIFSGAASGGTYLSSLGQVLVRMFPFSRGLFEDKVAN 222
            R + L VAV LTF+ LWAPFC++S +    T L  L QVL R+FP  RGLFEDKVAN
Sbjct:    6 RFVKLAVAVILTFSLLWAPFCLYSSS----TCLDGLLQVLHRIFPVGRGLFEDKVAN 58          
BLAST of mRNA_A-nodosum_M_contig10720.4.1 vs. uniprot
Match: A0A5D6Y746_9STRA (Alpha-1,3-glucosyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y746_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.940e-10
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   52 RVLGLGVAVALTFAFLWAPFCIFSGAASGGTYLSSLGQVLVRMFPFSRGLFEDKVAN 222
             +L LGVAV  TFA LW PFC+      G T ++S+ QVL R+FPF+RGLFEDKVAN
Sbjct:  251 HLLKLGVAVVGTFALLWLPFCL--RPFEGETCVTSVLQVLHRIFPFARGLFEDKVAN 305          
BLAST of mRNA_A-nodosum_M_contig10720.4.1 vs. uniprot
Match: A0A1V9Z1G8_9STRA (Alpha-1,3-glucosyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1G8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.450e-10
Identity = 36/60 (60.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   46 IGRVLGLGVAVALTFAFLWAPFCIFSGAASGGTYLSSLGQVLVRMFPFSRGLFEDKVANV 225
            I R L L VAV  TFA LWAPFCI+      G     L QVL R+FP  RGLFEDKVANV
Sbjct:  229 IARFLKLAVAVIGTFALLWAPFCIYHD----GPCADGLLQVLHRIFPVGRGLFEDKVANV 284          
BLAST of mRNA_A-nodosum_M_contig10720.4.1 vs. uniprot
Match: W2RC32_PHYPN (Alpha-1,3-glucosyltransferase n=14 Tax=Phytophthora TaxID=4783 RepID=W2RC32_PHYPN)

HSP 1 Score: 62.8 bits (151), Expect = 9.480e-10
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   52 RVLGLGVAVALTFAFLWAPFCIFSGAASGGTYLSSLGQVLVRMFPFSRGLFEDKVAN 222
             +L L VAV  TFA +W+PFC +       T LS++ QV+ R+FPF RGLFEDKVAN
Sbjct:  248 HLLKLAVAVIATFALMWSPFCAYPSQEE--TCLSTIAQVVQRIFPFGRGLFEDKVAN 302          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10720.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G191_ECTSI1.220e-1453.85Alpha-1,3-glucosyltransferase n=2 Tax=Ectocarpus T... [more]
A0A482S0G5_9ARCH1.840e-1253.13Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8K1CIN0_PYTOL4.700e-1260.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3H9F0_9STRA6.420e-1262.96Alpha-1,3-glucosyltransferase (Fragment) n=1 Tax=S... [more]
G4YVW2_PHYSP1.630e-1154.39Alpha-1,3-glucosyltransferase n=4 Tax=Phytophthora... [more]
A0A7S2KY17_9STRA2.280e-1156.67Alpha-1,3-glucosyltransferase (Fragment) n=1 Tax=S... [more]
A0A1V9YSV9_9STRA1.760e-1059.65Alpha-1,3-glucosyltransferase (Fragment) n=1 Tax=T... [more]
A0A5D6Y746_9STRA6.940e-1059.65Alpha-1,3-glucosyltransferase n=1 Tax=Pythium bras... [more]
A0A1V9Z1G8_9STRA9.450e-1060.00Alpha-1,3-glucosyltransferase n=1 Tax=Achlya hypog... [more]
W2RC32_PHYPN9.480e-1054.39Alpha-1,3-glucosyltransferase n=14 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10720contigA-nodosum_M_contig10720:3408..4376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G191
Preferred nameALG6
PFAMsAlg6_Alg8
Model size227
Max annot lvl2759|Eukaryota
KEGG koko:K03848
KEGG ReactionR06262
KEGG Pathwayko00510,ko01100,map00510,map01100
KEGG ModuleM00055
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0004583,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006091,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009060,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0015980,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0031224,GO:0031984,GO:0032501,GO:0032502,GO:0034645,GO:0036211,GO:0040003,GO:0042175,GO:0042281,GO:0042335,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046527,GO:0048856,GO:0055114,GO:0070085,GO:0071704,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons2
Evalue2.01e-15
EggNOG OGsKOG2575@1|root,KOG2575@2759|Eukaryota
EC2.4.1.267
Descriptiondolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity
Cds size225
COG categoryM
CAZyGT57
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866460.4159248-CDS-A-nodosum_M_contig10720:3407..35721680866460.4159248-CDS-A-nodosum_M_contig10720:3407..3572Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10720 3408..3572 +
1680866460.4293919-CDS-A-nodosum_M_contig10720:4315..43751680866460.4293919-CDS-A-nodosum_M_contig10720:4315..4375Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10720 4316..4375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10720.4.1prot_A-nodosum_M_contig10720.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10720 3408..4375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10720.4.1

>prot_A-nodosum_M_contig10720.4.1 ID=prot_A-nodosum_M_contig10720.4.1|Name=mRNA_A-nodosum_M_contig10720.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
REVGDATLSARWAIVIGRVLGLGVAVALTFAFLWAPFCIFSGAASGGTYL
SSLGQVLVRMFPFSRGLFEDKVANV
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mRNA from alignment at A-nodosum_M_contig10720:3408..4376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10720.4.1 ID=mRNA_A-nodosum_M_contig10720.4.1|Name=mRNA_A-nodosum_M_contig10720.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=969bp|location=Sequence derived from alignment at A-nodosum_M_contig10720:3408..4376+ (Ascophyllum nodosum dioecious)
CGGGAGGTCGGTGATGCCACGCTGTCTGCGCGGTGGGCAATCGTGATTGG TCGAGTGCTCGGCCTTGGCGTGGCGGTGGCTCTGACTTTCGCGTTCCTCT GGGCTCCGTTCTGCATTTTTTCGGGCGCTGCTAGTGGAGGAACCTACCTG TCTTCCCTGGGGCAGGCGAGTTCGATTTACACCCCTCCACCAACGAGTCC ATCGCCTTCTACCGCCTTCTGCGCGTATGACAATGGGCCACTTTGTCGAT ATACTGTTAGAGCGTATTACATTGTATCATGCATACCTTCTCCTAGCAAA AGCCCGTGTGACTGTGTGACTGTTCGATATTCGAGAGGGGGGGGGGGCGG GGAACaAAAAAGACaAAAAAAATGCGATTTTTGCTTCGAGCATTTCGCTG CCCCTCTTTAAAAATGCAGCATGGAGCCTGTAGGTCTACAGTAGTACTTG CTAAAAGGAAGGGCTATACCCACGGTAAAAGAAACACACTGGCATTAGAG GGTGGGTTCACGTGAGCCCTCGGAAGAATCTCTCCGGGATCCCACACAGA TATGCAACAAAAAATACTAACCAAACCTATCCTGATCTCGCATTGGTCAG CATAAGGCTAATCTATCCGCATTAGGAGTTAACATTTGCAGCCTATATGA TCCCAGCTAAACGTTTTGACATTTTTCCCCCCCTCACTGGGGGATGCCCA GAAGGTCGAGATGCGTTTAGAGTTTCCTTCAAACAATTACTTGCGACTGT TTTGATCAACCATTAATAGCATTTTGCTGTGTAGATGTTCGCGCGATGAC CCCGCCGTGTTGGGATGAAAACGTCTTCCGTACCATACCATACCACACCA TACCATACCATCGTACTCTCGAATTGATGAGAAACACCCGCGGTCGTACT CTCTGCAGGTCCTGGTGAGGATGTTCCCGTTCTCTCGCGGCTTGTTCGAG GACAAGGTGGCCAACGTTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10720:3408..4376+

>mRNA_A-nodosum_M_contig10720.4.1 ID=mRNA_A-nodosum_M_contig10720.4.1|Name=mRNA_A-nodosum_M_contig10720.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig10720:3408..4376+ (Ascophyllum nodosum dioecious)
CGGGAGGTCGGTGATGCCACGCTGTCTGCGCGGTGGGCAATCGTGATTGG
TCGAGTGCTCGGCCTTGGCGTGGCGGTGGCTCTGACTTTCGCGTTCCTCT
GGGCTCCGTTCTGCATTTTTTCGGGCGCTGCTAGTGGAGGAACCTACCTG
TCTTCCCTGGGGCAGGTCCTGGTGAGGATGTTCCCGTTCTCTCGCGGCTT
GTTCGAGGACAAGGTGGCCAACGTT
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