mRNA_A-nodosum_M_contig1072.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1072.5.1
Unique NamemRNA_A-nodosum_M_contig1072.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1072.5.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 3.210e-76
Identity = 122/172 (70.93%), Postives = 142/172 (82.56%), Query Frame = 1
Query:    1 LNEFGLTPGDLASGTTDSGSDIKWVGTVGLLDTYEVLWDWCPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQF 516
            L EFGL P  LASGTTDSGSD+K V T  L   Y VLW WC CHL VKAAEQA+G+  DPAKSKNP AR++L+ V KVVE LNKSP  K+KF+DLQ++M+ ++FK+VKHAPQRWLSLTRT+ER IRLWHVLRKLYSDEG  FPL++G  KD ILQLYSL+QPLS+ITRDGQ+
Sbjct:  321 LEEFGLKPSHLASGTTDSGSDVKAVSTNCLWPMYAVLWCWCFCHLMVKAAEQAYGIHLDPAKSKNPQARDILKKVVKVVENLNKSPNFKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQY 492          
BLAST of mRNA_A-nodosum_M_contig1072.5.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.420e-71
Identity = 110/175 (62.86%), Postives = 137/175 (78.29%), Query Frame = 1
Query:    1 LNEFGLTPGDLASGTTDSGSDIKWVGTVGLLDTYEVLWDWCPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 525
            L+EFGL   DLASGTTDSGSD+K V   GL   Y VLW+WC CHL VKAAE AFG   DP KSKNP  R++L++V  +V  L+KSP L +KF+D+Q++++ ++ KI   APQRWL+L RTLER+IRLWHVLRKL+SD G  FPL++G NKD ILQLYSL+QPLS++TRDGQ+ GV
Sbjct:  234 LHEFGLRASDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCCCHLMVKAAEDAFGTHPDPQKSKNPEGRKMLKNVIGMVGTLHKSPNLTAKFEDVQVDLLGEILKIPNQAPQRWLTLVRTLERVIRLWHVLRKLHSDAGKTFPLEEGDNKDCILQLYSLLQPLSSVTRDGQYGGV 408          
BLAST of mRNA_A-nodosum_M_contig1072.5.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 6.740e-69
Identity = 106/174 (60.92%), Postives = 132/174 (75.86%), Query Frame = 1
Query:    1 LNEFGLTPGDLASGTTDSGSDIKWVGTVGLLDTYEVLWDWCPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAG 522
            L+EFGL   DLASGT DSGSD+K V   GL   + VLW+WC CHL VKAAE  FG   DP KSKNP AR++L+ +  +V  L++S   K+KFDDLQ++++ +V KI   AP+RWL+L RTLER+IRLWHVLRKLYSD G  FPL++G NKD ILQLYSL+QP S++TRDGQ+ G
Sbjct:   88 LHEFGLRTSDLASGTADSGSDVKSVSFNGLHPQFGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKKLINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGG 261          
BLAST of mRNA_A-nodosum_M_contig1072.5.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 1.550e-68
Identity = 107/172 (62.21%), Postives = 131/172 (76.16%), Query Frame = 1
Query:    1 LNEFGLTPGDLASGTTDSGSDIKWVGTVGLLDTYEVLWDWCPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQF 516
            L EFGL P DLASGTTDSGSD+K     GL   Y VLW+WC CHL VKAAE  FG   DP KSKNP AR++L++V  +V  LN+S   K+KF+DLQ++++ DV KI   APQRWL+  RTLER+IRLWHVLRKLYSD G  FPL++G NK+ ILQL+SL+Q LS++TRDGQ+
Sbjct:   37 LREFGLRPSDLASGTTDSGSDVKSASVNGLYPQYGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKNVISMVGTLNRSSNFKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQY 208          
BLAST of mRNA_A-nodosum_M_contig1072.5.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 2.840e-66
Identity = 106/175 (60.57%), Postives = 133/175 (76.00%), Query Frame = 1
Query:    1 LNEFGLTPGDLASGTTDSGSDIKWVGTVGLLDTYEVLWDWCPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 525
            LNEFGL P DLASGTTDSGSD+K V   GL   Y VLW+WC CHL VKAAE AFG   DP  SKNP AR +L+++  ++  L+KS  L +KF+DLQ++++ +V  I   APQRWL+L RT+ER+IRLW V+RKLYSD G  FPL++G NKD I QLYSL+QPLS++TRDGQ+ G+
Sbjct:   69 LNEFGLRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGL 242          
BLAST of mRNA_A-nodosum_M_contig1072.5.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 1.090e-64
Identity = 108/175 (61.71%), Postives = 133/175 (76.00%), Query Frame = 1
Query:    1 LNEFGLTPGDLASGTTDSGSDIKWVGTVGLLDTYEVLWDWCPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 525
            L EFG+   DLA GTTDSGSD+K +    LL  ++  WDWC CHLA +AAEQAFG SADP K KN  AR +++ V K   K+N+SP  K KFD+ QL+M  +V KI KHAPQRWLSL R +ERIIRLWHVLRK+Y+++G+ FPLD+G NKD ILQLYSL++PL+AITRDGQ+  V
Sbjct:  304 LREFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKGSWDWCVCHLADRAAEQAFGTSADPQKPKNKDARGVVQLVIKAAAKVNQSPIFKQKFDEAQLQMTGEVLKIRKHAPQRWLSLVRVMERIIRLWHVLRKVYANDGVEFPLDKGDNKDNILQLYSLLRPLAAITRDGQYGAV 478          
BLAST of mRNA_A-nodosum_M_contig1072.5.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.930e-64
Identity = 101/172 (58.72%), Postives = 132/172 (76.74%), Query Frame = 1
Query:    1 LNEFGLTPGDLASGTTDSGSDIKWVGTVGLLDTYEVLWDWCPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQF 516
            L E+G+   DLA GTTDSGSD+K +    LL  +++ WDWC CHLA K+AE  FG SADP +SKN  AR++++ V K   K+N+S  +K KF+ + LEM+ ++ KI KHAPQRWLSL   +ERIIRLWHVLRK+Y+++G  FPLD+G+N+D ILQLYSL+QPLSAITRDGQ+
Sbjct:  285 LAEYGIKLSDLAGGTTDSGSDVKAMCVNILLGLHKIWWDWCDCHLADKSAENTFGTSADPQQSKNKIARDVIKLVIKTAAKINQSTIVKQKFEKVTLEMLDEILKITKHAPQRWLSLVLVMERIIRLWHVLRKVYANDGEEFPLDKGNNRDDILQLYSLLQPLSAITRDGQY 456          
BLAST of mRNA_A-nodosum_M_contig1072.5.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 2.260e-64
Identity = 105/175 (60.00%), Postives = 132/175 (75.43%), Query Frame = 1
Query:    1 LNEFGLTPGDLASGTTDSGSDIKWVGTVGLLDTYEVLWDWCPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 525
            L+EFG  P DLASGTTDSGSD+K V   GL   Y VLW+WC CHL +KAAE AFG   DP KSKNP A  +L+++  +V  L+KS  L +KF+DLQ++++ +V KI   APQRWL+L RT+ER+IRLWHVLRKLYSD G  F L++G NKD I QLYSL+Q LS++TRDGQ+ G+
Sbjct:   77 LHEFGRRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMIKAAEDAFGTHPDPQKSKNPEAHNMLKNLIGIVGTLHKSLNLTAKFEDLQVDLLGEVLKIPNQAPQRWLTLVRTMERVIRLWHVLRKLYSDAGKNFILEEGDNKDCIPQLYSLLQSLSSVTRDGQYGGL 251          
BLAST of mRNA_A-nodosum_M_contig1072.5.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 2.200e-59
Identity = 101/174 (58.05%), Postives = 125/174 (71.84%), Query Frame = 1
Query:    1 LNEFGLTPGDLASGTTDSGSDIKWVGTVGLLDTYEVLWDWCPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAG 522
            L+EFGL P DLASGTTDSG D+K V   GL   + VLW+ C  HL VKAAE  FG   DP KSKNP AR++L+ +  +V  L++S   K+KF DLQ+++  +VF     APQRWL+L  TLER+IRLWHVLRKLYSD G  FPL++G   D ILQL SL+QPLS++TRDGQ+ G
Sbjct:   45 LHEFGLRPSDLASGTTDSGLDVKSVSVNGLHPQFGVLWNCCFYHLMVKAAEDGFGTHVDPQKSKNPKARDMLKKLINLVGTLHRSSNFKAKFGDLQVDVWGEVFP--NQAPQRWLTLVPTLERVIRLWHVLRKLYSDTGKTFPLEEGDITDCILQLNSLLQPLSSVTRDGQYGG 216          
BLAST of mRNA_A-nodosum_M_contig1072.5.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.910e-53
Identity = 91/158 (57.59%), Postives = 118/158 (74.68%), Query Frame = 1
Query:   52 SGSDIKWVGTVGLLDTYEVLWDWCPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMVHDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLMQPLSAITRDGQFAGV 525
            SGSD+K V   GL   Y VLW+WC CHL VKAAE AFG   DP  SKNP AR +L+++  ++  L+KS  L +KF+DLQ++++ +V  I   APQRWL+L RT+ER+IRLW V+RKLYSD G  FPL++G NKD I QLYSL+QPLS++TRDGQ+ G+
Sbjct:  215 SGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGL 371          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1072.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE3.210e-7670.93Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KS21_9PHAE1.420e-7162.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L8D8_9PHAE6.740e-6960.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEE6_9PHAE1.550e-6862.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ66_9PHAE2.840e-6660.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE1.090e-6461.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ2_9PHAE1.930e-6458.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB08_9PHAE2.260e-6460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT2_9PHAE2.200e-5958.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE1.910e-5357.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1072contigA-nodosum_M_contig1072:185822..186348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size527
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.63e-16
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866459.9439833-CDS-A-nodosum_M_contig1072:185823..1863481680866459.9439833-CDS-A-nodosum_M_contig1072:185823..186348Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1072 185824..186348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1072.5.1prot_A-nodosum_M_contig1072.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1072 185824..186348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1072.5.1

>prot_A-nodosum_M_contig1072.5.1 ID=prot_A-nodosum_M_contig1072.5.1|Name=mRNA_A-nodosum_M_contig1072.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=175bp
LNEFGLTPGDLASGTTDSGSDIKWVGTVGLLDTYEVLWDWCPCHLAVKAA
EQAFGVSADPAKSKNPAARELLRHVTKVVEKLNKSPTLKSKFDDLQLEMV
HDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNK
DGILQLYSLMQPLSAITRDGQFAGV
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mRNA from alignment at A-nodosum_M_contig1072:185822..186348-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1072.5.1 ID=mRNA_A-nodosum_M_contig1072.5.1|Name=mRNA_A-nodosum_M_contig1072.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=527bp|location=Sequence derived from alignment at A-nodosum_M_contig1072:185822..186348- (Ascophyllum nodosum dioecious)
CTGAACGAGTTCGGATTGACTCCGGGAGACCTCGCCTCGGGCACGACGGA CAGCGGATCCGACATCAAGTGGGTCGGCACCGTCGGCCTCTTGGACACCT ACGAGGTCTTGTGGGATTGGTGCCCTTGCCACTTGGCGGTGAAAGCCGCC GAGCAAGCGTTTGGTGTGAGCGCAGACCCTGCCAAGTCCAAAAACCCCGC GGCACGCGAGCTTCTCCGGCATGTCACCAAGGTCGTAGAGAAGCTCAACA AGTCTCCCACCTTGAAAAGCAAGTTCGACGACTTGCAGCTGGAGATGGTG CACGACGTGTTCAAGATCGTCAAGCACGCTCCCCAACGGTGGCTCAGCCT GACTCGCACGCTGGAGCGGATCATCCGCTTGTGGCACGTGCTGAGGAAGC TTTACTCGGATGAGGGGATGGTGTTTCCCCTCGACCAGGGCAGCAACAAG GACGGCATCCTCCAGCTCTACTCGTTGATGCAGCCCCTTTCTGCGATCAC GCGTGATGGCCAATTCGCCGGCGTGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1072:185822..186348-

>mRNA_A-nodosum_M_contig1072.5.1 ID=mRNA_A-nodosum_M_contig1072.5.1|Name=mRNA_A-nodosum_M_contig1072.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=525bp|location=Sequence derived from alignment at A-nodosum_M_contig1072:185822..186348- (Ascophyllum nodosum dioecious)
CTGAACGAGTTCGGATTGACTCCGGGAGACCTCGCCTCGGGCACGACGGA
CAGCGGATCCGACATCAAGTGGGTCGGCACCGTCGGCCTCTTGGACACCT
ACGAGGTCTTGTGGGATTGGTGCCCTTGCCACTTGGCGGTGAAAGCCGCC
GAGCAAGCGTTTGGTGTGAGCGCAGACCCTGCCAAGTCCAAAAACCCCGC
GGCACGCGAGCTTCTCCGGCATGTCACCAAGGTCGTAGAGAAGCTCAACA
AGTCTCCCACCTTGAAAAGCAAGTTCGACGACTTGCAGCTGGAGATGGTG
CACGACGTGTTCAAGATCGTCAAGCACGCTCCCCAACGGTGGCTCAGCCT
GACTCGCACGCTGGAGCGGATCATCCGCTTGTGGCACGTGCTGAGGAAGC
TTTACTCGGATGAGGGGATGGTGTTTCCCCTCGACCAGGGCAGCAACAAG
GACGGCATCCTCCAGCTCTACTCGTTGATGCAGCCCCTTTCTGCGATCAC
GCGTGATGGCCAATTCGCCGGCGTG
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