mRNA_A-nodosum_M_contig10701.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10701.5.1
Unique NamemRNA_A-nodosum_M_contig10701.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10701.5.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.550e-26
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 VLVLNEGRLAGILTPKDLLNRVVAKGLNADTIPAEDVMTPNPDTVPPTMTAVGALKEMHENKYLHLPVVDE 213
            VLVL  GRLAGI+TPKDLL RVVAKGL+ D  P   VMTPNPD VPP MT + AL+EMHENKYLHLPVVDE
Sbjct: 2474 VLVLRNGRLAGIVTPKDLLMRVVAKGLDPDATPVSAVMTPNPDAVPPAMTVIEALREMHENKYLHLPVVDE 2544          
BLAST of mRNA_A-nodosum_M_contig10701.5.1 vs. uniprot
Match: A0A6H5K5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5J8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.200e-25
Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 VLVLNEGRLAGILTPKDLLNRVVAKGLNADTIPAEDVMTPNPDTVPPTMTAVGALKEMHENKYLHLPVVDE 213
            VLVL  GRLAGI+TPKDLL RVVAKGL+ D  P   VMTPNPD VPP MT + AL+EMHENKYLHLPVV+E
Sbjct:  590 VLVLRNGRLAGIVTPKDLLMRVVAKGLDPDATPVSAVMTPNPDAVPPAMTVIEALREMHENKYLHLPVVNE 660          
BLAST of mRNA_A-nodosum_M_contig10701.5.1 vs. uniprot
Match: A0A836CBL7_9STRA (Myosin 29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.530e-19
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 VLVLNEGRLAGILTPKDLLNRVVAKGLNADTIPAEDVMTPNPDTVPPTMTAVGALKEMHENKYLHLPVVD 210
            V+V+  G+L GILTPKDLLNRV+AK  + D     DVMTPNPD+VP  M  + AL +MHE +YLHLPVVD
Sbjct: 2075 VVVVERGKLVGILTPKDLLNRVLAKDRSPDDTLVSDVMTPNPDSVPADMPVLDALHQMHEQRYLHLPVVD 2144          
BLAST of mRNA_A-nodosum_M_contig10701.5.1 vs. uniprot
Match: A0A7S3Y3X3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3X3_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 3.280e-18
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   16 EGRLAGILTPKDLLNRVVAKGLNADTIPAEDVMTPNPDTVPPTMTAVGALKEMHENKYLHLPVVD 210
            +GRLAGILTPKD+ NRVVA GL+    PA + MTP PD  PP +  V A+ +MH+++YLHLP+ D
Sbjct:   69 DGRLAGILTPKDVPNRVVAPGLDPAATPAAEAMTPEPDAFPPDLDLVDAMHQMHDHRYLHLPIAD 133          
BLAST of mRNA_A-nodosum_M_contig10701.5.1 vs. uniprot
Match: A0A7S3Y3Y8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3Y8_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 4.600e-18
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   16 EGRLAGILTPKDLLNRVVAKGLNADTIPAEDVMTPNPDTVPPTMTAVGALKEMHENKYLHLPVVD 210
            +GRLAGILTPKD+ NRVVA GL+    PA + MTP PD  PP +  V A+ +MH+++YLHLP+ D
Sbjct:   84 DGRLAGILTPKDVPNRVVAPGLDPAATPAAEAMTPEPDAFPPDLDLVDAMHQMHDHRYLHLPIAD 148          
BLAST of mRNA_A-nodosum_M_contig10701.5.1 vs. uniprot
Match: A0A197KC40_9FUNG (CBS-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KC40_9FUNG)

HSP 1 Score: 84.7 bits (208), Expect = 1.530e-17
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    4 LVLNEGRLAGILTPKDLLNRVVAKGLNADTIPAEDVMTPNPDTVPPTMTAVGALKEMHENKYLHLPVVD 210
            LV+ EGR+AGI T KD++ RV+A GL  D      VMTP+PDTVP  MT + ALK+MH+N YLHLPVVD
Sbjct:  291 LVMEEGRIAGIFTTKDIVVRVMAAGLEPDRTSVIRVMTPHPDTVPSNMTILDALKKMHDNHYLHLPVVD 359          
BLAST of mRNA_A-nodosum_M_contig10701.5.1 vs. uniprot
Match: A0A1Y2GNZ6_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GNZ6_9FUNG)

HSP 1 Score: 82.4 bits (202), Expect = 9.960e-17
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    4 LVLNEGRLAGILTPKDLLNRVVAKGLNADTIPAEDVMTPNPDTVPPTMTAVGALKEMHENKYLHLPVVDE 213
            L++ +GR+ GI T KD++ RV+A GL  D      VMTP+PDTVP +MT + ALK+MH+N+YLHLP VD+
Sbjct:  291 LIMEDGRITGIFTTKDIVVRVLAAGLEPDRTSVIRVMTPHPDTVPASMTILDALKKMHDNRYLHLPAVDD 360          
BLAST of mRNA_A-nodosum_M_contig10701.5.1 vs. uniprot
Match: A0A7S3M8U3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8U3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.240e-16
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 VLVLNEGR---LAGILTPKDLLNRVVAKGLNADTIPAEDVMTPNPDTVPPTMTAVGALKEMHENKYLHLPV 204
            VLV++  R   L GILTPKDLLNRV+AKGL+ D     +VMTPNPD V   +T + AL+EM+E+KYLHLPV
Sbjct:  253 VLVMDAKRGKELLGILTPKDLLNRVIAKGLSPDETLVSEVMTPNPDCVTGDLTLLEALREMYEHKYLHLPV 323          
BLAST of mRNA_A-nodosum_M_contig10701.5.1 vs. uniprot
Match: A0A3C0FHZ6_9PROT (CBS domain-containing protein n=1 Tax=Thalassospira sp. TaxID=1912094 RepID=A0A3C0FHZ6_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 8.180e-16
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 VLVLNEGRLAGILTPKDLLNRVVAKGLNADTIPAEDVMTPNPDTVPPTMTAVGALKEMHENKYLHLPVVD 210
            ++V N+ RLAGI T +DL+NRVVAKGL+A ++P   VMT NPDT+ P   A+ AL  M   +Y HLPV+D
Sbjct:   40 IIVDNDARLAGIFTERDLVNRVVAKGLDAASVPLSKVMTANPDTLSPDDLAMSALDLMSARRYRHLPVLD 109          
BLAST of mRNA_A-nodosum_M_contig10701.5.1 vs. uniprot
Match: A0A433CZU0_9FUNG (Uncharacterized protein (Fragment) n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CZU0_9FUNG)

HSP 1 Score: 79.7 bits (195), Expect = 8.850e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 VLVLNEGRLAGILTPKDLLNRVVAKGLNADTIPAEDVMTPNPDTVPPTMTAVGALKEMHENKYLHLPVVDE 213
            VLV+  G +AGI T KD++ RV+A GLN D      VMTP+PDT PP+M  + AL++MH+  YL+LPV+D+
Sbjct:  246 VLVMEHGEIAGIFTSKDIVLRVIAAGLNPDNCSVVRVMTPHPDTAPPSMNIMDALRKMHDGHYLNLPVLDD 316          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10701.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6N9_ECTSI2.550e-2676.06Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K5J8_9PHAE1.200e-2574.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBL7_9STRA9.530e-1961.43Myosin 29 n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A7S3Y3X3_HETAK3.280e-1856.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y3Y8_HETAK4.600e-1856.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A197KC40_9FUNG1.530e-1760.87CBS-domain-containing protein n=1 Tax=Linnemannia ... [more]
A0A1Y2GNZ6_9FUNG9.960e-1754.29Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]
A0A7S3M8U3_9STRA5.240e-1660.56Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A3C0FHZ6_9PROT8.180e-1654.29CBS domain-containing protein n=1 Tax=Thalassospir... [more]
A0A433CZU0_9FUNG8.850e-1652.11Uncharacterized protein (Fragment) n=2 Tax=Jimgerd... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10701contigA-nodosum_M_contig10701:14084..14562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6N9
PFAMsCBS,IQ,MyTH4,Myosin_head,PB1
Model size213
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.18e-27
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size213
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866457.9590602-CDS-A-nodosum_M_contig10701:14083..142541680866457.9590602-CDS-A-nodosum_M_contig10701:14083..14254Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10701 14084..14254 +
1680866457.9690819-CDS-A-nodosum_M_contig10701:14520..145621680866457.9690819-CDS-A-nodosum_M_contig10701:14520..14562Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10701 14521..14562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10701.5.1prot_A-nodosum_M_contig10701.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10701 14084..14562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10701.5.1

>prot_A-nodosum_M_contig10701.5.1 ID=prot_A-nodosum_M_contig10701.5.1|Name=mRNA_A-nodosum_M_contig10701.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
VLVLNEGRLAGILTPKDLLNRVVAKGLNADTIPAEDVMTPNPDTVPPTMT
AVGALKEMHENKYLHLPVVDE
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mRNA from alignment at A-nodosum_M_contig10701:14084..14562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10701.5.1 ID=mRNA_A-nodosum_M_contig10701.5.1|Name=mRNA_A-nodosum_M_contig10701.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=479bp|location=Sequence derived from alignment at A-nodosum_M_contig10701:14084..14562+ (Ascophyllum nodosum dioecious)
GTCTTGGTATTGAACGAAGGTCGGCTGGCGGGCATTTTGACTCCAAAGGA TCTACTCAATCGCGTAGTCGCGAAGGGACTCAACGCCGACACAATCCCGG CGGAGGACGTGATGACCCCGAATCCCGACACCGTTCCGCCTACCATGACG GCCGTGGGGGCTCTGAAAGAGGTGAGAGTTCTATATTAATATTAGTGTAT GTCCAGCTAGAATTAAAAAGAGGAGGGAAAGGGAAAATGGTGGTGCTATT TGAAGCTCTTCTCGCGGTCGGAAAACCGCTGCATACCTCTCTGTTGTGAC CTCTTTGACTGGCTGGTTTTCTACGAGACGATTAGGTGGCGTTCACCCAT CGCTCTAATAATAGGCATGGCCCGGCAGAGGGTTGATTCGTTTTTTGTTC TTCACGCCTGCTTGGACGAAAACGTGGCACATCGCAGATGCACGAGAACA AGTATCTGCACCTACCCGTGGTGGACGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10701:14084..14562+

>mRNA_A-nodosum_M_contig10701.5.1 ID=mRNA_A-nodosum_M_contig10701.5.1|Name=mRNA_A-nodosum_M_contig10701.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig10701:14084..14562+ (Ascophyllum nodosum dioecious)
GTCTTGGTATTGAACGAAGGTCGGCTGGCGGGCATTTTGACTCCAAAGGA
TCTACTCAATCGCGTAGTCGCGAAGGGACTCAACGCCGACACAATCCCGG
CGGAGGACGTGATGACCCCGAATCCCGACACCGTTCCGCCTACCATGACG
GCCGTGGGGGCTCTGAAAGAGATGCACGAGAACAAGTATCTGCACCTACC
CGTGGTGGACGAG
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