mRNA_A-nodosum_M_contig10701.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10701.4.1
Unique NamemRNA_A-nodosum_M_contig10701.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10701.4.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-12
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    1 SEKKQELAASLLKLSVKKGRGGTNKNALAAVAQFLQGLSDGEEEPTLGDILEEQPAGFIQARDSASTAGKAI 216
            S +KQELAASL+K+   K      KN LAA+   LQGLSDGEE+PTL DIL EQ   F +  DS +  GKAI
Sbjct: 2396 SGEKQELAASLIKMHSMKAGKKNGKNTLAAMTMLLQGLSDGEEDPTLEDILSEQTGEFAEEGDSVAACGKAI 2467
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10701.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6N9_ECTSI1.400e-1255.56Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10701contigA-nodosum_M_contig10701:13063..13908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6N9
PFAMsCBS,IQ,MyTH4,Myosin_head,PB1
Model size225
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.3e-13
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size225
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866457.904171-CDS-A-nodosum_M_contig10701:13062..131011680866457.904171-CDS-A-nodosum_M_contig10701:13062..13101Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10701 13063..13101 +
1680866457.9190373-CDS-A-nodosum_M_contig10701:13313..134031680866457.9190373-CDS-A-nodosum_M_contig10701:13313..13403Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10701 13314..13403 +
1680866457.927584-CDS-A-nodosum_M_contig10701:13812..139081680866457.927584-CDS-A-nodosum_M_contig10701:13812..13908Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10701 13813..13908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10701.4.1prot_A-nodosum_M_contig10701.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10701 13063..13908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10701.4.1

>prot_A-nodosum_M_contig10701.4.1 ID=prot_A-nodosum_M_contig10701.4.1|Name=mRNA_A-nodosum_M_contig10701.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
SEKKQELAASLLKLSVKKGRGGTNKNALAAVAQFLQGLSDGEEEPTLGDI
LEEQPAGFIQARDSASTAGKAIATV
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mRNA from alignment at A-nodosum_M_contig10701:13063..13908+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10701.4.1 ID=mRNA_A-nodosum_M_contig10701.4.1|Name=mRNA_A-nodosum_M_contig10701.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=846bp|location=Sequence derived from alignment at A-nodosum_M_contig10701:13063..13908+ (Ascophyllum nodosum dioecious)
TCGGAGAAAAAGCAGGAGCTAGCTGCCTCGCTGCTCAAGGTCTGACAGAG
ACAGAGCCACCCATCGTTAGAGCCAGCTATGAATAGTGGACGTTCGATTT
GGGATGTTGATGTGCGATTTCGTGCTCCGCACGTTTGACATGAAAATATG
GCCCATGCGAAGATACTCGGAAGGGCAAGTGTTTCTGTGTGTTTTTGAGA
CTAAATTATTTTGACCCTCGACCACCCTTGTGTTTACTGTGAAATTTTCA
GCTCTCGGTGAAGAAGGGGCGAGGAGGCACAAACAAGAACGCCCTCGCAG
CGGTGGCGCAATTCCTTCAGGGTCTTTCCGACGGCGAAGAGGTGGAGCGA
TTCGATCCGATCCGTGTTGTTTTTTTAGCTCTTATCGTACCGCTTCTCAG
GACGGTATGTATATTTTTTGTGACAGTGTAGATAATGAGGCGTCCGATCG
GCAAGAGTGTCTCGCGATCAGGGAAAAGGAGTGCGGACTCACGCCGGACG
TGATGGTGTGGGACTTCGCTGGAGGATATACTCCTTATAAGATGTCCAGG
ATGGTCTCAAAATACCGTTCCATGTACCTCAGCTACTGGCGATGAGGTTT
GCCTCTGTTTTGAGACGATGCAATAAGATCTTCGGTAGAGCTCTGTACGA
CTATTATATATTACATGCTATATATCGACTAGAGCCGCAAGGGGCACGTC
CCCGTCTCGCATCGCATCGCCATGTGCTGACAACGAATGCTCTGATGCAG
GAACCCACGCTAGGAGACATTCTTGAGGAGCAACCGGCGGGATTTATACA
AGCACGAGACAGCGCCTCCACCGCGGGGAAGGCGATAGCCACCGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10701:13063..13908+

>mRNA_A-nodosum_M_contig10701.4.1 ID=mRNA_A-nodosum_M_contig10701.4.1|Name=mRNA_A-nodosum_M_contig10701.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig10701:13063..13908+ (Ascophyllum nodosum dioecious)
TCGGAGAAAAAGCAGGAGCTAGCTGCCTCGCTGCTCAAGCTCTCGGTGAA
GAAGGGGCGAGGAGGCACAAACAAGAACGCCCTCGCAGCGGTGGCGCAAT
TCCTTCAGGGTCTTTCCGACGGCGAAGAGGAACCCACGCTAGGAGACATT
CTTGAGGAGCAACCGGCGGGATTTATACAAGCACGAGACAGCGCCTCCAC
CGCGGGGAAGGCGATAGCCACCGTC
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