mRNA_A-nodosum_M_contig10701.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10701.1.1
Unique NamemRNA_A-nodosum_M_contig10701.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10701.1.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 4.570e-25
Identity = 66/126 (52.38%), Postives = 87/126 (69.05%), Query Frame = 1 
Query:    1 DAEAAHKFALCGKLQRDIQELEALREENPTLEELRERAGKTKADIEKFAAMADYGRAGSLQGELVAMEDKIKAXXXXXXXEKQDGSFSAMSQSQRELEESMAKTREELEAAKAQKAFDKCIELQPR 378
            DAEA   +A+C +LQR+I+ LEA RE+NPTL EL+E+  KTKA+I++ AA  DY +AG LQ ELV+ME+KIK        EK   +   +SQ  +ELE+ +  T +ELEAAKA K F KCI+LQ R
Sbjct: 1095 DAEAEQNYAVCTRLQREIKNLEAQREQNPTLAELKEKEEKTKAEIDEAAANTDYAKAGQLQTELVSMEEKIKVIEEVVEAEKARSALKDLSQ--KELEDKIHTTTDELEAAKAAKDFAKCIDLQAR 1218
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BLAST of mRNA_A-nodosum_M_contig10701.1.1 vs. uniprot
Match: A0A6H5JZZ5_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ5_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.400e-23
Identity = 66/128 (51.56%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:    1 DAEAAHKFALCGKLQRDIQELEALREENPTLEELRERAGKTKADIEKFAAMADYGRAGSLQG----ELVAMEDKIKAXXXXXXXEKQDGSFSAMSQSQRELEESMAKTREELEAAKAQKAFDKCIELQ 372
            DAEA   +A+C +LQR+I+ LEA RE+NPTL EL+E+  KTKA+I++ AA ADY +AG LQ     ELV ME+KIK        EK   +   +SQ  +ELE+ +  T +ELEAAKA K F KCI+LQ
Sbjct: 1153 DAEAEQNYAVCTRLQREIKNLEAQREQNPTLAELKEKEEKTKAEIDEAAANADYAKAGQLQARCVTELVKMEEKIKVIEEVVEAEKARSALKDLSQ--KELEDKIHTTSDELEAAKAAKEFAKCIDLQ 1278
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10701.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6N9_ECTSI4.570e-2552.38Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JZZ5_9PHAE2.400e-2351.56Myosin motor domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10701contigA-nodosum_M_contig10701:1523..5493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6N9
PFAMsCBS,IQ,MyTH4,Myosin_head,PB1
Model size563
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.49e-26
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size561
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866457.6639698-CDS-A-nodosum_M_contig10701:1522..15881680866457.6639698-CDS-A-nodosum_M_contig10701:1522..1588Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10701 1523..1588 +
1680866457.678366-CDS-A-nodosum_M_contig10701:1746..18631680866457.678366-CDS-A-nodosum_M_contig10701:1746..1863Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10701 1747..1863 +
1680866457.6879013-CDS-A-nodosum_M_contig10701:2300..24891680866457.6879013-CDS-A-nodosum_M_contig10701:2300..2489Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10701 2301..2489 +
1680866457.7081141-CDS-A-nodosum_M_contig10701:5303..54921680866457.7081141-CDS-A-nodosum_M_contig10701:5303..5492Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10701 5304..5492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10701.1.1prot_A-nodosum_M_contig10701.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10701 1523..5492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10701.1.1

>prot_A-nodosum_M_contig10701.1.1 ID=prot_A-nodosum_M_contig10701.1.1|Name=mRNA_A-nodosum_M_contig10701.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=187bp
DAEAAHKFALCGKLQRDIQELEALREENPTLEELRERAGKTKADIEKFAA
MADYGRAGSLQGELVAMEDKIKAMEEEAEAEKQDGSFSAMSQSQRELEES
MAKTREELEAAKAQKAFDKCIELQPRSRRQSLQSERSYTDASLVGVPALS
LPPRTADVRDDLPPVLLVETPQSVNLEDFNFNPPTPQ
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mRNA from alignment at A-nodosum_M_contig10701:1523..5493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10701.1.1 ID=mRNA_A-nodosum_M_contig10701.1.1|Name=mRNA_A-nodosum_M_contig10701.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3971bp|location=Sequence derived from alignment at A-nodosum_M_contig10701:1523..5493+ (Ascophyllum nodosum dioecious)
GACGCTGAGGCGGCGCACAAGTTCGCGCTCTGCGGCAAGCTTCAGCGCGA
CATTCAGGAGCTAGAGGTGTGGCAAGTATGCACGGTTGTGGTTTTTTAGT
TCTCCCTCGTGAGCAGATCGGGATCGATGAGCATTACGTGCAGGCTGTGG
CCTGTCTGTATCACGATCTGTTCGAGGGTGATCAGGGCAAACGCGTGCCT
GCGCCGGGTGCACTTTTTTTACAGGCTCTCCGGGAGGAGAACCCCACGCT
GGAAGAGCTCAGGGAGAGGGCCGGAAAAACGAAGGCGGATATCGAAAAGT
TTGCCGCCATGGCGGACTACGGACGCGCCGGCAGCTTGCAGGTGATTGGC
CTTGATCAAAATCTTAACGCAAGCCAATATCATTGTGTGAATACATACTG
TATGTATACGATAACTTTATCTTCACAGAAAGACCGCCCTCGCAACGCTC
TCACGAGGGTGCCTAGAGATGTTTTTGCTGCGGACGAAGTTTGGTCATGT
TAAAAACCTTCCTAGCATGTACGAAACGGATAACGAGTAATTGTTTCGTA
TCTCTCAGCCAGCCGAACGCCGTTCTCTCGATTGATCGGCTTCACGAAGC
GAGCTGACCCGCATGTATGTTGTGGAATTTAAGACGCAGCTCTTGGGAGA
TGGTGGTTTGTTGTTATGCGTGGTGTCTCGCTGAATGCGGCCCGCCGCCT
TCGATCGAACGCCTCCATGCTTGGAGTGCCCGATTTTTTTCCACTTGAGG
CACTACTGTCTGACGTCATCATGTGTAGGGTGAGCTGGTAGCGATGGAAG
ATAAGATCAAAGCCATGGAAGAAGAGGCTGAGGCTGAAAAGCAGGATGGG
AGCTTCTCCGCGATGTCCCAGTCCCAGAGGGAGCTCGAGGAATCGATGGC
AAAGACGAGGGAAGAGCTAGAGGCCGCCAAGGCGCAGAAGGCGTTCGACA
AGTGCATCGAGCTCCAGGTGAGAAGAAAATCTGTGAAAATTATCAATTCC
CGTCCCATCTCGTCCCATCTTGTCTTTTTGCCGTGTCCTGTGATTGGTGC
TGGTTGTGCGATTACGGTAACGTAATAAACTTAATCGCCATGTAGGAAAT
TACTCGTGATACTAAGTACAACTTGTTTGTTTTTGGCCAAGCCATTGGAC
TACTCAGTCACGTGACTTGACTCAGTAGTCGAGTCCAATGGTTTGGCCGA
CATATATCACACCGCCGGTACTTTCAACATGCTATAACCACTTCATACCA
ATAGTGGGTGTGGGAAAGAGAGGCGAATATTAATTGGTCCATGGTGACCT
GCCAAGGCAGCACTCGTTCAGAACTGCCTTGAGGTTTACTGGCCCTGTGC
CGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCCGA
TAAACTCGGGACTGACCCGATGGCGTATGGCGGTTTCATAAATGGACGCC
GCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTGAGCCTGA
GTATGGAGATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCGTCTCG
CGAGACCAAATTCTCAGGCACGCACGGGGACAGGGGAATATTAATTTTCC
CTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCAT
ACTCTGGTATATGTGATGACCATAGATACATACATACTTGTGTTGCTATT
TTCGTGTTCAAAGAAAAATCTGAACGCATCTAGACCTTCTGAGCATCCCC
TAGTCAGGGGGGAAAATTTGTCAAAACATTTAGGTAGGATCATAGGCTGC
TAAGATCATTTTCGCTCAATGTCGATATTTTTGTGAGTATTGAGTAAACT
GTATACTGTATGTATGGTCACACATTGTATTGTACACCCAAAACACTCTC
CCCGTATTTCGAACAGCCAGAGTTACATACTGGTATTGCATCGTAAATCA
AAACAGTATAGCCCATGTACTTTATGTACATCATGTATATATGGTCAGCA
CTTTCAGCAGAGTATGGATCAATCGGATTTGGTTGCCAATCCTGCTCGTG
GTCAGCCGAACAGGGGAAACGGTTTTTTTCCCTGTCCCCGTCCGCGCCTG
AGAATTTGGTCTCGCGAGACAGGTTTGGCCGTCTCGTCCCGCGTCAGTCC
GCTTATTCCCAACTCTCAGGCTGAATCTGATTGGTTAATATGATGCTGGT
ACACACTACAGTACAGTAGTATAATGTAGACGTGGACATAATCCAGGGGA
CACCAGAAACCCTTGTTTACCAGAGAACATACTCGTACCAGTATATCATA
TTAATAGTATGTATCTACTTTTAGTATTGTTTGTACAGTGGTATTAATGT
ATTTAGAGCCGGTCGCCCCGGTAGCATAGAGGTAACCTTGTAACCTTCTG
ACACGTTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTTTCTCACTAA
AAACTAGGAGTAAAAACTAAAACCAAAAATGCCCAACGGGTGGAGAACGA
TTAAATCGTTAGTACACAAAATTCGACTTCACGGTCGACGAGGGAAAGAA
ATGCCTGAATCCTTCTCGCGAGAAAAATTAAGGCACGCACCGCAGAAAGA
AGGTGGATGAGAAATCCTGTGCGACCTTCCTCCTGTGTGGCCCCGGCTGG
TACGTCCAACGAACTTGATGTCCAGAATGAATGGGAAAAAAACACAAAAC
GCACAGATGGATTTCTGCTCTGTGGCTGCCGGCACCACGAGAATACGCCC
TCACAGGAATGCAAACACAAAAATCACGATTTTTTTGTGACGATAACGCT
TCACTGCTCCCACCCCCTCCTAAAAATTAGAAAGACAGACAGTTAAGACC
GTAACACAGTTAAGACAGATAGGACGGATATAAGAAGTCGTCTAAGGTGT
GAGAGCGCTGAACTTGCATAGTGATAAAACCCTAGGCGTGAGCAGGGGAG
ATATGGGAAGATCTTTAAGTAACCATAGGCAGGGTGGGATTTGAAGCATG
TTGATAGCGCGTTGATTGAGCCCATCGGAAGCAAGATTTTAACAAAAAAG
CCCATCTTCAATAGGCAAACCTCTATCGTTGCCTTGTACATTCATCACCT
CTAATTAAGGCACGCACCGCAGAAGGAAGGTGGATGAGAAATCTTGTGTG
ACCTTCTTCCTGTGTGACCCCGGCTGGTACGTCCAACGAACATGATGTCC
AGAATAAATGGGAAGAAAACAACACAGTAGTGCAGTATAGACCACTATTA
ATATTAAATAGTGTACAGTAGTATATATACAAGTATTATCGTCTAGTTGT
GCTCTGCATGGTGATTAATATAAGTGTACGGTATGACGGTGGGCTTCTCC
CCGACATTGTTACTACCATCGGGGAACCCAGAAACAGTATATTATTACTA
CCATGTTGCATGATGTACTATTCATACGTTGTTTCATTTTTGTTTTTGCT
TTTTGTCTGGTGTCCCTGCATGGCGATTAATGTAAGTGTACATTATAACG
GTGGGCTTCTCCCCGACATTATACTGTTGACCCAATGTCACTACCATTGT
TGGGGAACCCGATTAAATGCCATGAAGAGGTTTTGTATTTAATTTGCAGC
CTATGATCCCTCCTACACGTTTTGACATTTTCCCCCCTGACTGGGGGATT
CTCAGAAGGTCTAGACGCGTTCAGATTTTTCTTGAAAAAATAGTATTAAA
CAGTTTTGCCTGACCTGCTTCTCTCTCTTTCTTTTTTTGCACATCATGTC
CTGTACACTTGTTGTACGCTTTTCTCGACAGCCAAGGTCGCGGCGGCAAT
CCCTGCAGTCGGAGAGGTCTTACACAGACGCTTCTCTCGTTGGGGTACCG
GCGCTCTCCCTACCCCCTCGAACGGCGGATGTGCGAGACGATCTTCCCCC
TGTGCTCCTCGTGGAAACTCCTCAGAGCGTAAACTTGGAGGACTTTAACT
TCAATCCCCCAACTCCTCAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10701:1523..5493+

>mRNA_A-nodosum_M_contig10701.1.1 ID=mRNA_A-nodosum_M_contig10701.1.1|Name=mRNA_A-nodosum_M_contig10701.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=561bp|location=Sequence derived from alignment at A-nodosum_M_contig10701:1523..5493+ (Ascophyllum nodosum dioecious)
GACGCTGAGGCGGCGCACAAGTTCGCGCTCTGCGGCAAGCTTCAGCGCGA
CATTCAGGAGCTAGAGGCTCTCCGGGAGGAGAACCCCACGCTGGAAGAGC
TCAGGGAGAGGGCCGGAAAAACGAAGGCGGATATCGAAAAGTTTGCCGCC
ATGGCGGACTACGGACGCGCCGGCAGCTTGCAGGGTGAGCTGGTAGCGAT
GGAAGATAAGATCAAAGCCATGGAAGAAGAGGCTGAGGCTGAAAAGCAGG
ATGGGAGCTTCTCCGCGATGTCCCAGTCCCAGAGGGAGCTCGAGGAATCG
ATGGCAAAGACGAGGGAAGAGCTAGAGGCCGCCAAGGCGCAGAAGGCGTT
CGACAAGTGCATCGAGCTCCAGCCAAGGTCGCGGCGGCAATCCCTGCAGT
CGGAGAGGTCTTACACAGACGCTTCTCTCGTTGGGGTACCGGCGCTCTCC
CTACCCCCTCGAACGGCGGATGTGCGAGACGATCTTCCCCCTGTGCTCCT
CGTGGAAACTCCTCAGAGCGTAAACTTGGAGGACTTTAACTTCAATCCCC
CAACTCCTCAG
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