mRNA_A-nodosum_M_contig1069.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1069.3.1
Unique NamemRNA_A-nodosum_M_contig1069.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1069.3.1 vs. uniprot
Match: A0A6H5KHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.610e-22
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:   82 VDELATMDIDDD----VADDEVLLPLEVPAGYSLVSTAPAALTRALVHQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGS 393
            +DELA +D DD     V +DE+   +E+PAG+ +    P AL R L+ + +L RLGMGWFRG+IT+++Q  T   YD+ + LE D STR +KLPL KYS D  AA GS
Sbjct:   53 IDELALLDDDDSMDPQVPEDEIQ-GMEIPAGFRIQEAKPVALDRLLLRRGVLARLGMGWFRGLITQQSQKDTRHLYDYCMQLELDQSTRKMKLPLDKYSGDSDAAVGS 159
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BLAST of mRNA_A-nodosum_M_contig1069.3.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.910e-22
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:   82 VDELATMDIDDDVADDEVLLPLEVPAGYSLVSTAPAALTRALVHQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGS 393
            +DEL+ +D DD +  D+ +  +E+P G+ + ++ PAAL   L+ + +L+RLGMGWF G+ITR++Q RT   YD+RV L+ D STR +KL L  Y  D  A  GS
Sbjct:    1 MDELSHVDDDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGS 104
[Close]
BLAST of mRNA_A-nodosum_M_contig1069.3.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.180e-21
Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:   73 RQDVDELATMDIDDDVADDEVLLPLEVPAGYSLVSTAPAALTRALVHQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGS 393
            +Q  D L  +  DD +   E  L +++P G+ L ++ P+AL ++LV + +L++LG+GWF GVI+R+A   + D YD+RV L +DGSTRS+KLPL  YS D  A  GS
Sbjct: 1856 KQSEDPLTQLHDDDQLCAGEESLEMDIPDGFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGS 1962
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BLAST of mRNA_A-nodosum_M_contig1069.3.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.300e-21
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   82 VDELATMDIDDDVAD----DEVLLPLEVPAGYSLVSTAPAALTRALVHQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGS 393
             DELA +D DDD  D    ++ +  +E+PAG+ +    P AL R L+ + +L+RLGMGWF G+IT++ Q  T   YD+ V LE D STR +KLPL KYS D  AA GS
Sbjct:   13 TDELALLD-DDDSTDPQNPEDEIQGMEIPAGFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGS 119
[Close]
BLAST of mRNA_A-nodosum_M_contig1069.3.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 8.730e-21
Identity = 44/94 (46.81%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:   82 VDELATMDIDDDVADDEVLLPLEVPAGYSLVSTAPAALTRALVHQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKY 363
            +DEL  +D DD +  D  +  +E+P G+ + ++ PAAL  +L+ + +L+RLGMGW  G+ITR++Q RT   YD+RV L+ D STRS+KLPL  Y
Sbjct:  100 MDELRLVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMY 193
[Close]
BLAST of mRNA_A-nodosum_M_contig1069.3.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.790e-20
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:   82 VDELATMDIDDDVADDEVLLPLEVPAGYSLVSTAPAALTRALVHQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKY 363
            ++EL+ +D DD +  D+ +  +E+P G+ + +  PAA+  +L+ + +L+RLGMGWF GVITRK+Q RT   YD+RV L+ D ST S+KLPL  Y
Sbjct:  246 MEELSLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMY 339
[Close]
BLAST of mRNA_A-nodosum_M_contig1069.3.1 vs. uniprot
Match: A0A6H5K4S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.720e-20
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:   82 VDELATMDIDDDVA----DDEVLLPLEVPAGYSLVSTAPAALTRALVHQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGS 393
             DELA +D DD +     +DE+   +E+PAG+ +    P AL R L+ + +L+RLGMGWF G+IT+++Q  T   YD+ V LE D STR +KLPL KYS D  AA GS
Sbjct:  164 TDELALLDDDDSMEPQDPEDEIQ-GMEIPAGFRIQEAKPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGS 270
[Close]
BLAST of mRNA_A-nodosum_M_contig1069.3.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.360e-20
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:   82 VDELATMDIDDDVADDEVLLPLEVPAGYSLVSTAPAALTRALVHQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPL 354
            ++EL+ +D DD +  D+ +L +E+P G+ + ++ PAAL  +   + +L+RLGMGWF  VITR++Q RT   YD+RV L+ D STRS+KLPL
Sbjct:  123 MNELSLVDDDDSMESDDEILAMEIPDGFRIQASTPAALDSSSPQRGVLVRLGMGWFGRVITRQSQERTRHLYDYRVHLDLDQSTRSMKLPL 213
[Close]
BLAST of mRNA_A-nodosum_M_contig1069.3.1 vs. uniprot
Match: A0A6H5K5K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5K9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 7.370e-20
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   82 VDELATMDIDDDV----ADDEVLLPLEVPAGYSLVSTAPAALTRALVHQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGS 393
             DELA +D D  +     +DE+   +++PAG+ +    P AL R L+ + +L+RLGMGWF G+IT+++Q  T   YD+ V LE D STR +KLPL KYS D  AA GS
Sbjct:   19 TDELALLDDDGSMNPQDPEDEIQR-MKIPAGFRIQEAKPVALGRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDRSTRKMKLPLDKYSGDSDAAVGS 125
[Close]
BLAST of mRNA_A-nodosum_M_contig1069.3.1 vs. uniprot
Match: A0A6H5KLT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT3_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 7.500e-20
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:   82 VDELATMDIDDDVADDEV---LLPLEVPAGYSLVSTAPAALTRALVHQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGS 393
             DELA +D DD +  D+       +E+PAG+ L  + PAAL R L+ + +L+RLGMGWF G+I +++  R    YD+ V LE D STR+VKLPL KYS D  AA GS
Sbjct:   19 TDELALLDEDDSMDPDDPEDETQGMEIPAGFRLQESTPAALDRLLLQRGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVDHSTRNVKLPLDKYSGDPDAAVGS 123
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1069.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHK5_9PHAE1.610e-2249.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHL7_9PHAE1.910e-2245.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE3.180e-2144.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA94_9PHAE6.300e-2148.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2B3_9PHAE8.730e-2146.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J8_9PHAE1.790e-2046.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4S7_9PHAE3.720e-2048.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUT4_9PHAE6.360e-2047.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5K9_9PHAE7.370e-2046.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLT3_9PHAE7.500e-2048.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1069contigA-nodosum_M_contig1069:38221..38613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FI08
PFAMsDDE_1
Model size393
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.33e-16
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866454.8159971-UTR-A-nodosum_M_contig1069:38220..383191680866454.8159971-UTR-A-nodosum_M_contig1069:38220..38319Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1069 38221..38319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866454.8282478-CDS-A-nodosum_M_contig1069:38319..386131680866454.8282478-CDS-A-nodosum_M_contig1069:38319..38613Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1069 38320..38613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1069.3.1prot_A-nodosum_M_contig1069.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1069 38320..38613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1069.3.1

>prot_A-nodosum_M_contig1069.3.1 ID=prot_A-nodosum_M_contig1069.3.1|Name=mRNA_A-nodosum_M_contig1069.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
MDIDDDVADDEVLLPLEVPAGYSLVSTAPAALTRALVHQEILLRLGMGWF
RGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGS
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mRNA from alignment at A-nodosum_M_contig1069:38221..38613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1069.3.1 ID=mRNA_A-nodosum_M_contig1069.3.1|Name=mRNA_A-nodosum_M_contig1069.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at A-nodosum_M_contig1069:38221..38613+ (Ascophyllum nodosum dioecious)
GCCAGGTTCAAGCGACGAGAGCGAGAGCGATAGCGAGGAAGAGGGGGTAA
AGAGCGTGGGGGGGGCAGGCCACGTCAAGACGTTGATGAACTGGCTACGA
TGGACATCGACGACGACGTCGCTGATGACGAGGTCTTACTGCCGCTTGAA
GTCCCTGCTGGTTATTCTCTCGTGAGCACAGCACCTGCCGCCCTCACTCG
CGCACTCGTTCACCAAGAGATTCTGCTTCGGCTGGGTATGGGCTGGTTCA
GGGGGGTCATCACTCGAAAGGCTCAAGCACGCACGAGCGACCGCTACGAC
TTTAGAGTGTTTCTCGAGACCGACGGCAGCACGCGCAGCGTGAAACTTCC
GCTGGCAAAGTATTCGGTGGACGGGGCCGCGGCAGAGGGATCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1069:38221..38613+

>mRNA_A-nodosum_M_contig1069.3.1 ID=mRNA_A-nodosum_M_contig1069.3.1|Name=mRNA_A-nodosum_M_contig1069.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig1069:38221..38613+ (Ascophyllum nodosum dioecious)
ATGGACATCGACGACGACGTCGCTGATGACGAGGTCTTACTGCCGCTTGA
AGTCCCTGCTGGTTATTCTCTCGTGAGCACAGCACCTGCCGCCCTCACTC
GCGCACTCGTTCACCAAGAGATTCTGCTTCGGCTGGGTATGGGCTGGTTC
AGGGGGGTCATCACTCGAAAGGCTCAAGCACGCACGAGCGACCGCTACGA
CTTTAGAGTGTTTCTCGAGACCGACGGCAGCACGCGCAGCGTGAAACTTC
CGCTGGCAAAGTATTCGGTGGACGGGGCCGCGGCAGAGGGATCT
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