mRNA_A-nodosum_M_contig1067.3.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1067.3.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 105 bits (262), Expect = 1.380e-19 Identity = 59/134 (44.03%), Postives = 75/134 (55.97%), Query Frame = 2
Query: 74 VCSNGLAGVEIADVCCMAECGRCGGAGCGRRAQDAGLTAADCCAGRIRDADVFCVDSEAAPCIIGSGETCSNGFPGIETRGVCCASGCPQCGGSGCGSQAQRVGLSASDCCVGRITSAGELCSDTETAPCIIDE 475
+CSNG G++ + CC+AECG CGG+ C A GL A +CC I + C + APC + +TCSNGFPGI++ CC + C CGGS C GL A +CC I GELCS APC +DE
Sbjct: 364 MCSNGFPGIQSGNACCLAECGGCGGSDCD--ALGGGLGAENCCESDIVERGELCSIALEAPCYLE--DTCSNGFPGIQSGNACCLAECGGCGGSDCDQFGD--GLGAENCCESDIVEHGELCSIALEAPCYLDE 491
BLAST of mRNA_A-nodosum_M_contig1067.3.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.050e-18 Identity = 55/120 (45.83%), Postives = 65/120 (54.17%), Query Frame = 2
Query: 68 AQVCSNGLAGVEIADVCCMAECGRCGGAGCGRRAQDAGLTAADCCAGRIRDADVFCVDSEAAPCIIGSGETCSNGFPGIETRGVCCASGCPQCGGSGCGSQAQRVGLSASDCCVGRITSA 427
AQ CSNGLAG E + CC CG CGG GC + G A CC I A C + AAPCI+ + +TCSNG G E G CC+ GC CGG GC ++G A+ CC I SA
Sbjct: 378 AQTCSNGLAGYENSGACCSVGCGTCGGEGCSQL----GEGAESCCTSNIIAAREPCSEKGAAPCIMDTDQTCSNGLAGFENSGACCSVGCGTCGGQGC----SQLGEGAASCCTSNIISA 489
BLAST of mRNA_A-nodosum_M_contig1067.3.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 3.000e-17 Identity = 65/156 (41.67%), Postives = 81/156 (51.92%), Query Frame = 2
Query: 44 LLLVSSSNAQVCSNGLAGVEIADVCCMAECGRCGGAGCGRRAQDAGLTAADCCAGRIRDADVFC------VDSEAAPCIIGSGETCSNGFP--GIETRGVCCASGCPQCGGSGCGSQAQRVGLSASDCCVGRITSAGELCSDTETAPCIIDEVCGP 487
LL SS S G G+ DVCC AECG CGG+GCG RA GLTA +CC I A+V C VD + +P S F G+ CC++GC +CGGSGC + GL+ +DCC I++ LCS T APCI+D P
Sbjct: 73 LLEEGSSPTPASSGGCDGILQGDVCCSAECGTCGGSGCGSRA---GLTANECCTSTIAAANVPCGSAPCVVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSDRGG--GLTGADCCTSDISN---LCSVTGAAPCIVDGDTSP 220
BLAST of mRNA_A-nodosum_M_contig1067.3.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 2.740e-14 Identity = 61/197 (30.96%), Postives = 77/197 (39.09%), Query Frame = 2
Query: 68 AQVCSNGLAGVEIADVCCMAECGRCGGAGCGRRAQDAGLTAADCCAGRIRDADVFCVDSEAAPCII-GSG-------------------------------------------------------------ETCSNGFPGIETRGVCCASGCPQCGGSGCGSQAQRVGLSASDCCVGRITSAGELCSDTETAPCIID 472
A VCSNG+ G++ + CC+AECG CGG+ C GL CC I D C + AAPC++ GS + CSNG PGI++ CC + C CGGSGC GL +CC I GELCS T APC++D
Sbjct: 1605 ADVCSNGIPGIQSGNACCLAECGACGGSDCAEFG--GGLGEDYCCQSEIEDFGELCSATMAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDVCSNGIPGIQSGNACCLAECGGCGGSGCAQLGG--GLGEDNCCQSEIEDFGELCSVTMAAPCVVD 1797
BLAST of mRNA_A-nodosum_M_contig1067.3.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 7.010e-11 Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 2
Query: 260 IIGSGETCSNGFPGIETRGV-CCASGCPQCGGSGCGSQAQRVGLSASDCCVGRITSAGELCSDTETAPCIIDEVCGPALT 496
++ G+TC+NG GI+ GV CC GC +C G GC + GL A CC I ++G LCS+T +APCIIDE GP+ T
Sbjct: 18 VVVQGDTCTNGIEGIDGNGVVCCPLGCGRCAGEGCTAFGSENGLGADSCCGNAIKASGRLCSETGSAPCIIDEE-GPSPT 96
BLAST of mRNA_A-nodosum_M_contig1067.3.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 6.480e-8 Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 2
Query: 71 QVCSNGLAGVEI-ADVCCMAECGRCGGAGCGRRAQDAGLTAADCCAGRIRDADVFCVDSEAAPCII 265
Q CSNG+ G++ +VCC CG+CGG+GCG GL A CC+ + +V+C D+ AAPCII
Sbjct: 681 QTCSNGIEGIDHKGEVCCPLACGQCGGSGCGSAGSANGLDGASCCSSEVLAGNVYCEDTNAAPCII 746
BLAST of mRNA_A-nodosum_M_contig1067.3.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 3.330e-7 Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 2
Query: 56 SSSNAQVCSNGLAGVEI-ADVCCMAECGRCGGAGCGRRAQDAGLTAADCCAGRIRDADVFCVDSEAAPCII 265
S+ + Q CSNG+ G++ +VCC CG+CGG GCG L CC+ ++ +V+C D+ AAPCII
Sbjct: 653 SADDTQTCSNGIEGIDHKGEVCCPLACGQCGGTGCGSAGSAFELDGESCCSSQVLAGNVYCEDTNAAPCII 723
BLAST of mRNA_A-nodosum_M_contig1067.3.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 1.130e-6 Identity = 36/104 (34.62%), Postives = 47/104 (45.19%), Query Frame = 2
Query: 65 NAQVCSNGLAGVEIADVCCMAECGRCGGAGCGRRAQDAGLTAADCCAGRIRDADVFCVDSEAAPCII------------GSG-----ETCSNGFPGIETRGVCC 325
CSNG+ G + CC A CG+CGG GCG AG +A CC+ + A C + +PC+I GS CSNG PG + +CC
Sbjct: 451 GTSTCSNGILGYQDGPACCAANCGQCGGGGCGSVPGTAGASA--CCSSDVELAGNLCSATGVSPCVIDNYTPAPVVPDYGSAAPVVPSNCSNGLPGYQNNDICC 552
BLAST of mRNA_A-nodosum_M_contig1067.3.1 vs. uniprot
Match: A0A6H5K6S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 9.620e-6 Identity = 33/73 (45.21%), Postives = 41/73 (56.16%), Query Frame = 2
Query: 62 SNAQVCSNGLAGVEIADVCCMAECGRCGGAGCGRRAQDAGLTAADCCAGRIRDADVFCVDSEAAPCIIGSGET 280
S +CSNG +G++ + CC+AECG CGG GCG GL A CC I + C + AAPC I GET
Sbjct: 441 SELDMCSNGFSGIQSGNACCLAECGECGGHGCGEFG--GGLGADKCCESDIEEYGELCSIALAAPCYI-DGET 510
BLAST of mRNA_A-nodosum_M_contig1067.3.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 1.200e-5 Identity = 31/67 (46.27%), Postives = 36/67 (53.73%), Query Frame = 2
Query: 74 VCSNGLAGVEIADVCCMAECGRCGGAGCGRRAQDAGLTAADCCAGRIRDADVFCVDSEAAPCIIGSG 274
VCSNG G++ CC+AECG CGG GCG GL A CC I + C + AAPC I G
Sbjct: 118 VCSNGFPGIQSGVSCCLAECGECGGRGCGEFG--GGLGADKCCESDIEEYGELCSIALAAPCYIDDG 182 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1067.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1067.3.1 >prot_A-nodosum_M_contig1067.3.1 ID=prot_A-nodosum_M_contig1067.3.1|Name=mRNA_A-nodosum_M_contig1067.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=211bp MWPTQWILAMLGLLLVSSSNAQVCSNGLAGVEIADVCCMAECGRCGGAGCback to top mRNA from alignment at A-nodosum_M_contig1067:120417..123990+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1067.3.1 ID=mRNA_A-nodosum_M_contig1067.3.1|Name=mRNA_A-nodosum_M_contig1067.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3574bp|location=Sequence derived from alignment at A-nodosum_M_contig1067:120417..123990+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1067:120417..123990+ >mRNA_A-nodosum_M_contig1067.3.1 ID=mRNA_A-nodosum_M_contig1067.3.1|Name=mRNA_A-nodosum_M_contig1067.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=633bp|location=Sequence derived from alignment at A-nodosum_M_contig1067:120417..123990+ (Ascophyllum nodosum dioecious)back to top |