mRNA_A-nodosum_M_contig1065.42.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1065.42.1
Unique NamemRNA_A-nodosum_M_contig1065.42.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1065.42.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 5.360e-44
Identity = 81/103 (78.64%), Postives = 86/103 (83.50%), Query Frame = -3 
Query:  603 GFTPQGTKTEKAFAEAGQNVVGSMRSNSRENVTVVTTISADGTTWKPTIIFKGQRMQADWMSEENGPPDARYTATDSSFMQGTVFLNYLKDFHKQLGERGLLD 911
            G TPQGTKT KAFAE+GQ VVGSMRSNSREN+TVV TISADG TW PTI FK QR+Q DW  E NGP  ARYT TDSSFMQG VF+ YLKDFHKQLG+RGLLD
Sbjct:  171 GTTPQGTKTTKAFAESGQKVVGSMRSNSRENITVVATISADGHTWAPTITFKRQRLQVDWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQLGDRGLLD 273
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BLAST of mRNA_A-nodosum_M_contig1065.42.1 vs. uniprot
Match: A0A6H5KN20_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN20_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 3.590e-43
Identity = 86/127 (67.72%), Postives = 93/127 (73.23%), Query Frame = -3 
Query:  543 TPQGTKTEKAFAEAGQNVVGSMRSNSRENVTVVTTISADGTTWKPTIIFKGQRMQADWMSEENGPPDARYTATDSSFMQGTVFLNYLKDFHKQLGERGLLDDASK------HSEHPLSQVGKNVKTL 905
            TPQGTKT KAFAE+GQ VVG+MRSNSREN TVV TIS DG TW PTIIFKGQR+QADW  E NGP  ARYT TDSSFMQG VF+ YLKDFHKQLG+RGLLD          H+ H   QV +    L
Sbjct:  228 TPQGTKTTKAFAESGQKVVGAMRSNSRENTTVVATISVDGHTWAPTIIFKGQRLQADWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDGHASHVSVQVFRLAMNL 354
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BLAST of mRNA_A-nodosum_M_contig1065.42.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.270e-43
Identity = 87/130 (66.92%), Postives = 96/130 (73.85%), Query Frame = -3 
Query:  540 GFTPQGTKTEKAFAEAGQNVVGSMRSNSRENVTVVTTISADGTTWKPTIIFKGQRMQADWMSEENGPPDARYTATDSSFMQGTVFLNYLKDFHKQLGERGLLDDASK------HSEHPLSQVGKNVKTLE 911
            G TPQGTKT KAFAE+GQ VVGSMR+NSREN TVV TISADG TW PTIIFKGQR+QAD   E NGP  AR+T TDSSFMQG VF+NYLKDFHKQLG+RGLLD          H+ H   +V K    L+
Sbjct:  171 GTTPQGTKTTKAFAESGQKVVGSMRANSRENTTVVATISADGHTWAPTIIFKGQRLQADCFVERNGPEGARHTCTDSSFMQGDVFMNYLKDFHKQLGDRGLLDGKPHILLLDGHASHVSVEVIKLAMNLK 300
[Close]
BLAST of mRNA_A-nodosum_M_contig1065.42.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 9.840e-43
Identity = 81/103 (78.64%), Postives = 87/103 (84.47%), Query Frame = -3 
Query:  603 GFTPQGTKTEKAFAEAGQNVVGSMRSNSRENVTVVTTISADGTTWKPTIIFKGQRMQADWMSEENGPPDARYTATDSSFMQGTVFLNYLKDFHKQLGERGLLD 911
            G TPQGTKT KAFAEAGQ VV SMRSNS EN TVVTTISA+G TW PTIIFKGQR+Q DW +E NGP DARYT TDSSFMQG VF+ YLKDFHKQL +RG+LD
Sbjct:  166 GPTPQGTKTMKAFAEAGQKVVESMRSNSLENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIKYLKDFHKQLDDRGVLD 268
[Close]
BLAST of mRNA_A-nodosum_M_contig1065.42.1 vs. uniprot
Match: A0A6H5KHG4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG4_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 8.620e-42
Identity = 79/103 (76.70%), Postives = 86/103 (83.50%), Query Frame = -3 
Query:  603 GFTPQGTKTEKAFAEAGQNVVGSMRSNSRENVTVVTTISADGTTWKPTIIFKGQRMQADWMSEENGPPDARYTATDSSFMQGTVFLNYLKDFHKQLGERGLLD 911
            G TPQGTKT KAFAE GQ VV SMRSNSREN TVVTTIS +G TW PTIIFKGQR+Q DW +E NGP DARYT TDSSFMQG VF+ YLKDF+KQL +RG+LD
Sbjct:  109 GTTPQGTKTMKAFAEVGQKVVESMRSNSRENATVVTTISTNGVTWAPTIIFKGQRLQLDWFAERNGPKDARYTCTDSSFMQGDVFIKYLKDFYKQLDDRGVLD 211
[Close]
BLAST of mRNA_A-nodosum_M_contig1065.42.1 vs. uniprot
Match: A0A6H5JYS0_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS0_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.480e-41
Identity = 87/129 (67.44%), Postives = 93/129 (72.09%), Query Frame = -3 
Query:  540 TPQGTKTEKAFAEAGQNVVGSMRSNSRENVT-VVTTISADGTTWKPTIIFKGQRMQADWMSEENGPPDARYTATDSSFMQGTVFLNYLKDFHKQLGERGLLDDASK------HSEHPLSQVGKNVKTLE 905
            TPQGTKT KAFAE+GQ VVGSMRSNSREN T VV TISADG TW PTIIFKG R+QADW  E NGP  ARYT TDSSFMQG VF+ YLKDFHKQ GERGLLD          HS H   +V +    L+
Sbjct:  148 TPQGTKTTKAFAESGQKVVGSMRSNSRENTTTVVVTISADGHTWAPTIIFKGHRLQADWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQFGERGLLDGKPHILLLDGHSSHVRVEVTRLAMNLK 276
[Close]
BLAST of mRNA_A-nodosum_M_contig1065.42.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.480e-40
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = -3 
Query:  603 GFTPQGTKTEKAFAEAGQNVVGSMRSNSRENVTVVTTISADGTTWKPTIIFKGQRMQADWMSEENGPPDARYTATDSSFMQGTVFLNYLKDFHKQLGERGLLD 911
            G TPQG KT KA+ +AGQ VV S+R+NSREN T+VTTISADG+TW PTIIFKGQR+Q DW +E+NGPPDARYT TDSSFMQG VF+ YLKDFH+QL +RGL+D
Sbjct:  170 GTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLID 272
[Close]
BLAST of mRNA_A-nodosum_M_contig1065.42.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 4.990e-40
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = -3 
Query:  603 GFTPQGTKTEKAFAEAGQNVVGSMRSNSRENVTVVTTISADGTTWKPTIIFKGQRMQADWMSEENGPPDARYTATDSSFMQGTVFLNYLKDFHKQLGERGLLD 911
            G TPQG KT KA+ +AGQ VV S+R+NSREN T+VTTISADG+TW PTIIFKGQR+Q DW +E+NGPPDARYT TDSSFMQG VF+ YLKDFH+QL +RGL+D
Sbjct:  411 GTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLID 513
[Close]
BLAST of mRNA_A-nodosum_M_contig1065.42.1 vs. uniprot
Match: A0A6H5KC91_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC91_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 8.830e-39
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = -3 
Query:  603 KAFAEAGQNVVGSMRSNSRENVTVVTTISADGTTWKPTIIFKGQRMQADWMSEENGPPDARYTATDSSFMQGTVFLNYLKDFHKQLGERGLLD 881
            K FAEAGQ VV SMRSNSREN TVVTTISA+G TW PTIIFKGQR+Q DW +E NGP DARYT TDSSFMQG VF+NYLKDFHKQL +RG+LD
Sbjct:    2 KVFAEAGQKVVESMRSNSRENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFINYLKDFHKQLDDRGVLD 94
[Close]
BLAST of mRNA_A-nodosum_M_contig1065.42.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.860e-38
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = -3 
Query:  603 KAFAEAGQNVVGSMRSNSRENVTVVTTISADGTTWKPTIIFKGQRMQADWMSEENGPPDARYTATDSSFMQGTVFLNYLKDFHKQLGERGLLD 881
            KAFAEAGQ VV SMRSNSREN TVVTTISA+G TW PTIIFKGQR+Q DW +E NGP DARYT TDSSFMQG VF+ YLKDFHKQL +RG+LD
Sbjct:    2 KAFAEAGQKVVESMRSNSRENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIMYLKDFHKQLDDRGVLD 94
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1065.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ62_9PHAE5.360e-4478.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN20_9PHAE3.590e-4367.72DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JFM5_9PHAE5.270e-4366.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS6_9PHAE9.840e-4378.64DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KHG4_9PHAE8.620e-4276.70DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JYS0_9PHAE1.480e-4167.44DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JV04_9PHAE1.480e-4073.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ12_9PHAE4.990e-4073.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC91_9PHAE8.830e-3979.57DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KGL1_9PHAE1.860e-3879.57DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1065contigA-nodosum_M_contig1065:255991..257290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1300
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866452.673242-UTR-A-nodosum_M_contig1065:255990..2562461680866452.673242-UTR-A-nodosum_M_contig1065:255990..256246Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1065 255991..256246 -
1680866452.6908207-UTR-A-nodosum_M_contig1065:256618..2572901680866452.6908207-UTR-A-nodosum_M_contig1065:256618..257290Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1065 256619..257290 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866452.6821182-CDS-A-nodosum_M_contig1065:256246..2566181680866452.6821182-CDS-A-nodosum_M_contig1065:256246..256618Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 256247..256618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1065.42.1prot_A-nodosum_M_contig1065.42.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1065 256247..256618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1065.42.1

>prot_A-nodosum_M_contig1065.42.1 ID=prot_A-nodosum_M_contig1065.42.1|Name=mRNA_A-nodosum_M_contig1065.42.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=124bp
MKEESVAVYLASGGPFSSDIQSACIRCPLKMMVGFHVVPSALIVVTTVTF
SRELERIEPTTFCPASANAFSVFVPCGVKPRTNLRSGKSAHPGSGRHSCF
LGAVYFSYLETTAVYYSNLYSSL*
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mRNA from alignment at A-nodosum_M_contig1065:255991..257290-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1065.42.1 ID=mRNA_A-nodosum_M_contig1065.42.1|Name=mRNA_A-nodosum_M_contig1065.42.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1300bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:255991..257290- (Ascophyllum nodosum dioecious)
CAGAAATATTTTGGGTGGAGACGGCTTAAGATGGTGCTCTTGCCTCGCCG
AACACCAACGTATGGGGTGTCCTTCGTCGGTAAGACACAGACGTAGTCAT
GGTCCACTGGACGATGAATTCCATGTGGCAGTCCCAATCTGCCGCGCCAT
TGATAGGCAGTCGCACTCAACACGCTATCTGTTTCAAGAAGCAGTTACTA
CTGCCGTATACTTTGTATTTCATGCTTTAACATGGGGATGTAGACCAACA
GCATCGTAACCATCAATACTCGTAACAGGAATCTTCAACAACCCGGACTC
GAAATAAATGAGTGCGATCACGTACATCAAGCTGGCGATGATCCAGTATG
ATGCACTTATTTTCCCTGTTCAGACCACAAGCAGGATTGGCAGCCACGGT
TGACGCCTGAACACAAACACAAACACACACCTTAAGAGGACCGATGTGAG
TACTGTAGCTTAGGATGACAGGGCCGGATTGCGCGGCTATATGCAATTTC
ATAAAACTTACCTATACCTTAGTGCTACAAACAATAATGTTCTAACGTTT
TGACATTTTTTCCTACCTGACTGAGGGGATGCTCAGAATGTTTAGATGCG
TCGTCGAGCAAGCCTCGCTCGCCGAGCTGCTTGTGGAAGTCCTTCAGGTA
GTTCAGGAACACAGTGCCCTGCATGAAGGAAGAGTCCGTCGCGGTGTACC
TCGCGTCCGGTGGTCCGTTCTCCTCCGACATCCAATCCGCTTGCATACGC
TGCCCCTTGAAGATGATGGTTGGCTTCCACGTGGTGCCATCGGCGCTGAT
TGTGGTGACCACAGTGACGTTCTCTCGGGAGTTGGAGCGCATCGAACCAA
CCACATTTTGCCCTGCTTCCGCAAACGCCTTCTCCGTCTTCGTACCTTGC
GGGGTGAAACCTAGAACCAATTTACGTAGCGGGAAAAGCGCACATCCGGG
ATCAGGGCGACACAGCTGTTTCTTAGGAGCCGTGTATTTTTCATATCTGG
AGACTACTGCTGTGTACTACTCTAATCTTTACTCTAGTCTTTAGACTAGC
CAGCGGACGGCAGCTGTGTGTGGTACGTAAGAGATCGCGGTCTCTGCAGA
CTACAAACGGAAGAACATATTTCGGCGCAGGGACAGAACTCCGCCTGATC
GTGACATGTTGCAATTATGATGATACTTCACTTTGCCCGCACAATACAGC
TTCTGGTGAAACCACACTAGACTAGTCTACTTGTCAATCCTCATCCCTGT
CTCATCAGTGTTGCGCAGGTGGTCCGCCTTCGGGTCCTCCGTCTTGATGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1065:255991..257290-

>mRNA_A-nodosum_M_contig1065.42.1 ID=mRNA_A-nodosum_M_contig1065.42.1|Name=mRNA_A-nodosum_M_contig1065.42.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:255991..257290- (Ascophyllum nodosum dioecious)
ATGAAGGAAGAGTCCGTCGCGGTGTACCTCGCGTCCGGTGGTCCGTTCTC
CTCCGACATCCAATCCGCTTGCATACGCTGCCCCTTGAAGATGATGGTTG
GCTTCCACGTGGTGCCATCGGCGCTGATTGTGGTGACCACAGTGACGTTC
TCTCGGGAGTTGGAGCGCATCGAACCAACCACATTTTGCCCTGCTTCCGC
AAACGCCTTCTCCGTCTTCGTACCTTGCGGGGTGAAACCTAGAACCAATT
TACGTAGCGGGAAAAGCGCACATCCGGGATCAGGGCGACACAGCTGTTTC
TTAGGAGCCGTGTATTTTTCATATCTGGAGACTACTGCTGTGTACTACTC
TAATCTTTACTCTAGTCTTTAG
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