mRNA_A-nodosum_M_contig1065.12.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1065.12.1 vs. uniprot
Match: D8LRM3_ECTSI (FkbM n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM3_ECTSI) HSP 1 Score: 169 bits (427), Expect = 1.600e-46 Identity = 89/140 (63.57%), Postives = 104/140 (74.29%), Query Frame = 1
Query: 136 EIFTRRSYLQHGLVVGKGTVVVDAGANLGLFSLQCLREAPAVQVYAFEPIPVIYDILVRNLRNWIKYDGKLG--PRPVALRVALGAEQSLQEFTFFRDSPGESTCNPKEREEQQCILRADKDAASWRKTLHLSDVPHQTQ 549
E+F RR Y QHG+ V +G VVVDAGAN+GLFSLQCLREA VQV+AFEPIPVIYD+LVRNL N K G P+PVALRVALGAEQ+ +EF FFRD+PGEST + ER EQQ L AD DAASWR+ + P + +
Sbjct: 30 EVFVRRCYFQHGIRVEEGAVVVDAGANIGLFSLQCLREAKGVQVFAFEPIPVIYDVLVRNLFNASSGPVKEGTCPKPVALRVALGAEQAEEEFYFFRDNPGESTRHRGERGEQQQALEADVDAASWRRVVEEGKHPDRAR 169
BLAST of mRNA_A-nodosum_M_contig1065.12.1 vs. uniprot
Match: A0A7S4RML8_9DINO (Hypothetical protein (Fragment) n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RML8_9DINO) HSP 1 Score: 117 bits (293), Expect = 2.360e-25 Identity = 121/409 (29.58%), Postives = 161/409 (39.36%), Query Frame = 1
Query: 136 EIFTRRSYLQHGLVVGKGTVVVDAGANLGLFSLQCLREAPAVQVYAFEPIPVIYDILVRNLRNWIKYDGKLG-----PRPVALRVALGAEQSLQE-----------FTFFRDSPGESTCNPKEREEQQCILRADKDAASWRKTLHLSDVPHQTQSVAAEAASALEAQVLARHDNINDQGGSKVGVPGSTQGLVNSAPACQTSRALSSETIAITGDACAEECTPPNKSREEFNMERLGQQEAGGVGAKDGSNQDTVDKQHQSFVCSVVPLSLTLR-------ELKLASVNLLKVDVEGDELAVLHGVDAEDWPKIRQVVLEVHDVDGRLASVVDLLASTPAAFDEVCWELQRTREVDGYVMVVPDALRMFFVFAKRGQKSDIA--GAATTSTQNAGGR--TVERDDNWAG 1281
EIFTRR Y + K ++VDAGAN+GLF+L LRE P+ Q+ FEP+P + +L RNLR G G P L+VALGA F ++ +PGEST + +E Q+ +L A A A L R PP + R E +H+ VCS LS L E ++LLKVDVEGDE AVL G+ A DWP+++QV +EVHDV+GRL V+++L A + E QR Y+ VP +LR+F V A RGQ + G TS A GR +R +W+G
Sbjct: 56 EIFTRRCYEPLVPLTSKQPLIVDAGANIGLFALWALREWPSAQILCFEPLPPVTAVLRRNLRAQAGCGGAAGRPLPPPSTSVLQVALGAGDCGASXXXXXXXXXAWFEYYPWAPGESTRHVEEAARQRTLL-----------------------------ARAARAAGLKRPPR------------------------------------------------PPGRRRAE---------------------------RHRCTVCS---LSQALEAALPQSGEGAPCDIDLLKVDVEGDEEAVLLGIAASDWPRVQQVAMEVHDVNGRLDRVLEVLRR--AGLRRLHVERQRPSTDGSYLSFVPRSLRLFHVRAARGQAPPLRCLGQCATSGLCACGRRHARKRPCDWSG 355
BLAST of mRNA_A-nodosum_M_contig1065.12.1 vs. uniprot
Match: A0A813EZJ2_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EZJ2_POLGL) HSP 1 Score: 112 bits (280), Expect = 1.850e-22 Identity = 110/373 (29.49%), Postives = 150/373 (40.21%), Query Frame = 1
Query: 136 EIFTRRSYLQHGLVVGKGTVVVDAGANLGLFSLQCLREAPAVQVYAFEPIPVIYDILVRNLRNW----IKYDGKLGPRPVALRVALGAEQSLQ-EFTFFRDSPGESTCNPKEREEQQCILRADKDAASWRKTLHLSDVPHQTQSVAAEAASALEAQVLARHDNINDQGGSKVGVPGSTQGLVNSAPACQTSRALSSETIAITGDACAEECTPPNKSREEFNMERLGQQEAGGVGAKDGSNQDTVDKQHQSFVCSVVPLSLTLREL-----KLASVNLLKVDVEGDELAVLHGVDAEDWPKIRQVVLEVHDVDGRLASVVDLLASTPAAFDEVCWELQRTREVDGYVMVVPDALRMFFVFAKRGQKSDIAGAAT 1224
EIF +R Y ++ ++VD GAN+G+F+L L E PA +V EP+P + ++L R+L + DG+ PR + VA+GA EF +F +PGES+ R +AA+ R+ L L+ S A A+ L V+ H+ Q F C V LS L L A ++LLKVD EGDE AV G+ EDWP+I+QVV EVHDVDGRL VV LL S ++ EV + Q DGY+ VP +LR+F V A R + G T
Sbjct: 696 EIFKQRCYEPLRPLLSAEPLIVDVGANIGVFALWALAEWPAARVVCLEPLPPVLEMLRRSLAACGALEAQADGR-PPRAAVVPVAIGASAEKDAEFVYFPWAPGESS-------------RHIAEAAAQRRRLELA-------SQRAGFANPLRPSVVEGHE--------------------------------------------------------------------------------------QRFRCRVRRLSDVLGALLGQSGSPAQIDLLKVDAEGDEEAVFQGLHEEDWPRIQQVVAEVHDVDGRLGRVVRLLISHGLSWMEV--KQQEPSVHDGYLSFVPRSLRLFHVRAARAGAPSLDGVET 959
BLAST of mRNA_A-nodosum_M_contig1065.12.1 vs. uniprot
Match: A0A1C4UMK5_9ACTN (Nonribosomal peptide synthetase DhbF n=3 Tax=Micromonospora TaxID=1873 RepID=A0A1C4UMK5_9ACTN) HSP 1 Score: 105 bits (262), Expect = 3.950e-20 Identity = 95/317 (29.97%), Postives = 121/317 (38.17%), Query Frame = 1
Query: 136 EIFTRRSYLQHGLVVGKGTVVVDAGANLGLFSLQCLREAPAVQVYAFEPIPVIYDILVRNLRNWIKYDGKLGPRPV-ALRVALGAEQSLQEFTFFRDSPGESTCNPKEREEQQCILRADKDAASWRKTLHLSDVPHQT----QSVAAEAASALEAQVLARHDNINDQGGSKVGVPGSTQGLVNSAPACQTSRALSSETIAITGDACAEECTPPNKSREEFNMERLGQQEAGGVGAKDGSNQDTVDKQHQSFVCSVVPLSLTLRELKLASVNLLKVDVEGDELAVLHGVDAEDWPKIRQVVLEVHDVDGRLASVVDLL 1071
EIFTRR YL+HG+ V G V+ D GAN+G+F+L P V+AFEPIP +Y+ L RN+ +L P AL L A+ + FTF+ PH T + EAA L L + D G G+ D +E S E F C + LS +RE + ++LLKVDVE E VL G+D E WP IRQVV+EVHDVD RLASV+ LL
Sbjct: 199 EIFTRRGYLRHGISVRDGDVIFDVGANIGMFTLFAGLHWPRATVFAFEPIPPLYESLRRNV--------ELHDLPATALPYGLAAKAGEETFTFY---------------------------------------PHNTVISSSRTSPEAAHDLVRSYLRNRSDHLDTPGDDTGI----------------------------SDEDLDELVDAGLSSERF-------------------------------TCPLRTLSDVVREHGVERIDLLKVDVESAEYEVLQGIDDEHWPLIRQVVVEVHDVDDRLASVLALL 409
BLAST of mRNA_A-nodosum_M_contig1065.12.1 vs. uniprot
Match: A0A563VWJ3_9CYAN (Uncharacterized protein n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563VWJ3_9CYAN) HSP 1 Score: 102 bits (255), Expect = 3.210e-19 Identity = 85/316 (26.90%), Postives = 126/316 (39.87%), Query Frame = 1
Query: 127 VQWEIFTRRSYLQHGLVVGKGTVVVDAGANLGLFSLQCLREAPAVQVYAFEPIPVIYDILVRNLRNWIKYDGKLGPRPVALRVALGAEQSLQEFTFFRDSPGESTCNPKEREEQQCILRADKDAASWRKTLHLSDVPHQTQSVAAEAASALEAQVLARHDNINDQGGSKVGVPGSTQGLVNSAPACQTSRALSSETIAITGDACAEECTPPNKSREEFNMERLGQQEAGGVGAKDGSNQDTVDKQHQSFVCSVVPLSLTLRELKLASVNLLKVDVEGDELAVLHGVDAEDWPKIRQVVLEVHDVDGRLASVVDLLA 1074
V EIF + SYL+HG+ + G + D GAN+GLF+L + V+VYAFEPIP ++++L N + G V L AE + +FT++ PH ++ A A E Q + + +N +S+ A++ A E+ ERL Q Q F C + LS + E + ++LLK+DVE EL VL+G+ E W KI+Q+V+EVHD DGRLA + +LA
Sbjct: 4301 VYQEIFEQLSYLRHGITINDGDCIFDVGANIGLFTLFAAKICSDVRVYAFEPIPPVFELLRLNTDLY-------GLNVKLFDVGLSAESTEAKFTYY---------------------------------------PH-VSVISGRFADASEEQEVVKSFLLNQD---------------------------TSDETALSPTAI-----------EQLLAERL---------------------QSQQFTCKLKTLSEIIEENGIEQIDLLKIDVEKSELEVLNGIKEEHWQKIKQIVVEVHDRDGRLAEITQMLA 4510
BLAST of mRNA_A-nodosum_M_contig1065.12.1 vs. uniprot
Match: A0A1Y0RLZ9_9CYAN (Carrier domain-containing protein n=2 Tax=Nostocales TaxID=1161 RepID=A0A1Y0RLZ9_9CYAN) HSP 1 Score: 100 bits (248), Expect = 2.020e-18 Identity = 86/313 (27.48%), Postives = 123/313 (39.30%), Query Frame = 1
Query: 136 EIFTRRSYLQHGLVVGKGTVVVDAGANLGLFSLQCLREAPAVQVYAFEPIPVIYDILVRNLRNWIKYDGKLGPRPVALRVALGAEQSLQEFTFFRDSPGESTCNPKEREEQQCILRADKDAASWRKTLHLSDVPHQTQSVAAEAASALEAQVLARHDNINDQGGSKVGVPGSTQGLVNSAPACQTSRALSSETIAITGDACAEECTPPNKSREEFNMERLGQQEAGGVGAKDGSNQDTVDKQHQSFVCSVVPLSLTLRELKLASVNLLKVDVEGDELAVLHGVDAEDWPKIRQVVLEVHDVDGRLASVVDLLA 1074
EIF R YL+HG+ + +G V D GAN+GLF+L + P V+VYAFEPIP+++D+L N + D KL + L FT++ + S EEQ + + L +S+ +E G +N E ERL KQ F+C + PLS + E + ++LLK+DVE EL VL G+ EDWPKIRQ+V+EVHD++ RL + LL+
Sbjct: 959 EIFEARCYLKHGITLSEGDCVFDVGANIGLFTLFAAQSYPNVKVYAFEPIPLVFDLLSINTELY-NLDVKL------FNIGLANTTKSDSFTYYNNLSLVSGRFADLEEEQNVV----------KSFLFKQKEYKDNESIVSE-------------------------------GAIN-----------------------------------ELLSERL------------------TTKQ---FICQLRPLSDVIHENGVKRIDLLKIDVEKSELDVLAGIREEDWPKIRQIVIEVHDINNRLDEITKLLS 1167
BLAST of mRNA_A-nodosum_M_contig1065.12.1 vs. uniprot
Match: A0A370ASV3_9ACTN (FkbM family methyltransferase n=1 Tax=Streptomyces corynorhini TaxID=2282652 RepID=A0A370ASV3_9ACTN) HSP 1 Score: 94.7 bits (234), Expect = 3.370e-18 Identity = 83/316 (26.27%), Postives = 125/316 (39.56%), Query Frame = 1
Query: 136 EIFTRRSYLQHGLVVGKGTVVVDAGANLGLFSLQCLREAPAVQVYAFEPIPVIYDILVRNLRNWIKYDGKLGPRPVALRVALGAEQSLQ-EFTFFRDSPGESTCNPKEREEQQCILRADKDAASWRKTLHLSDVPHQTQSVAAEAASALEA--QVLARHDNINDQGGSKVGVPGSTQGLVNSAPACQTSRALSSETIAITGDACAEECTPPNKSREEFNMERLGQQEAGGVGAKDGSNQDTVDKQHQSFVCSVVPLSLTLRELKLASVNLLKVDVEGDELAVLHGVDAEDWPKIRQVVLEVHDVDGRLASVVDLLA 1074
EIF R+YL+HG+ + + +VDAGAN+GLFSL +E P ++ AFEPIP I+ L NL + D ++ +R ALG++ Q FTF+ PG ST P++++ Q + + + EA A+ A +V A + ++D +G P ++LLK+DVEG EL V+ G+D DW ++RQ V+EV D+DGRLA V ++LA
Sbjct: 34 EIFVERTYLKHGIQLSDSSRIVDAGANVGLFSLFMKQEFPGARILAFEPIPAIHQALTENLDSHGAKDVEV------VRSALGSQYEEQVRFTFYPSLPGNSTRYPEQKKVGQELT---------------------VEQIGQEAVDAIMAGIEVEAEVNRLSDV----------LRGWAPEGP-----------------------------------------------------------------------------------IDLLKIDVEGAELEVMRGLDPADWQRVRQAVVEVQDLDGRLAGVREILA 229
BLAST of mRNA_A-nodosum_M_contig1065.12.1 vs. uniprot
Match: A0A0N1NKX6_9ACTN (Methyltransferase FkbM family n=3 Tax=Actinomycetia TaxID=1760 RepID=A0A0N1NKX6_9ACTN) HSP 1 Score: 94.4 bits (233), Expect = 4.100e-18 Identity = 86/314 (27.39%), Postives = 126/314 (40.13%), Query Frame = 1
Query: 136 EIFTRRSYLQHGLVVGKGTVVVDAGANLGLFSLQCLREAPAVQVYAFEPIPVIYDILVRNLRNWIKYDGKLGPRPVALRVALGAEQSLQ-EFTFFRDSPGESTCNPKEREEQQCILRADKDAASWRKTLHLSDVPHQTQSVAAEAASALEAQVLARHDNINDQGGSKVGVPGSTQGLVNSAPACQTSRALSSETIAITGDACAEECTPPNKSREEFNMERLGQQEAGGVGAKDGSNQDTVDKQHQSFVCSVVPLSLTLRE-LKLASVNLLKVDVEGDELAVLHGVDAEDWPKIRQVVLEVHDVDGRLASVVDLL 1071
EIF R+YL+HG+ + + +VDAGAN+GLFSL +E P ++ AFEPIP I+ L+ NL D + +R ALG Q FTF+ PG ST P+++ KVG +E +E++GQ+ + A V+ + + V LS LR+ ++LLK+DVEG EL V+ G+DA DW ++RQ V+EV D+DGRL +V+ +L
Sbjct: 34 EIFVERAYLKHGIQLSDSSRIVDAGANVGLFSLFVKQEFPGARILAFEPIPAIHQALLENL------DSRGAKDVEVVRSALGGRHEDQVRFTFYPALPGNSTRYPEQK---------------------------------------------------------KVG--------------------------------------------QELTVEQIGQEAVDAIMA-------AVEVEAE-----VNRLSDVLRDWAPEGPIDLLKIDVEGAELEVMEGLDAADWQRVRQAVIEVQDLDGRLDAVLAVL 228
BLAST of mRNA_A-nodosum_M_contig1065.12.1 vs. uniprot
Match: A0A5C2CZ48_9BACT (AMP-dependent synthetase and ligase n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A5C2CZ48_9BACT) HSP 1 Score: 98.6 bits (244), Expect = 4.660e-18 Identity = 82/312 (26.28%), Postives = 117/312 (37.50%), Query Frame = 1
Query: 136 EIFTRRSYLQHGLVVGKGTVVVDAGANLGLFSLQCLREAPAVQVYAFEPIPVIYDILVRNLRNWIKYDGKLGPRPVALRVALGAEQSLQEFTFFRDSPGESTCNPKEREEQQCILRADKDAASWRKTLHLSDVPHQTQSVAAEAASALEAQVLARHDNINDQGGSKVGVPGSTQGLVNSAPACQTSRALSSETIAITGDACAEECTPPNKSREEFNMERLGQQEAGGVGAKDGSNQDTVDKQHQSFVCSVVPLSLTLRELKLASVNLLKVDVEGDELAVLHGVDAEDWPKIRQVVLEVHDVDGRLASVVDLL 1071
EIF + YL+HG+ + G + D GAN+GLF+L R +YAFEPIP +++ L N + G + L+ AL E FTF+ PH +++ EA + + +N Q GD E E +ER +VC + PLS +RE + ++LLK+DVE EL VL G+ DWPKIRQVV+EVHD++GRL V ++L
Sbjct: 565 EIFREQVYLRHGVSLRDGDCIFDVGANIGLFTLFAGRRVKDAVIYAFEPIPPVFESLRLNAELY-------GLNAIPLQYALSDEAREDTFTFY---------------------------------------PH-VSVISSRYTDTAEAHRVVKSFLLNQQ--------------------------------EADGDGALSEQLVDELLEERLKVER--------------------------YVCRLSPLSDVIREYNVERLDLLKIDVERGELDVLGGIAEADWPKIRQVVVEVHDIEGRLTLVTEML 771
BLAST of mRNA_A-nodosum_M_contig1065.12.1 vs. uniprot
Match: S3ZZF4_9ACTN (Carrier domain-containing protein n=2 Tax=Streptomyces aurantiacus TaxID=47760 RepID=S3ZZF4_9ACTN) HSP 1 Score: 98.2 bits (243), Expect = 5.220e-18 Identity = 86/316 (27.22%), Postives = 121/316 (38.29%), Query Frame = 1
Query: 136 EIFTRRSYLQHGLVVGKGTVVVDAGANLGLFSLQCLREAPAVQVYAFEPIPVIYDILVRNLR----NWIKYDGKLGPRPVALRVALGAEQSLQEFTFFRDSPGESTCNPKEREEQQCILRADKDAASWRKTLHLSDVPHQTQSVAAEAASALEAQVLARHDNINDQGGSKVGVPGSTQGLVNSAPACQTSRALSSETIAITGDACAEECTPPNKSREEFNMERLGQQEAGGVGAKDGSNQDTVDKQHQSFVCSVVPLSLTLRELKLASVNLLKVDVEGDELAVLHGVDAEDWPKIRQVVLEVHDVDGRLASVVDLL 1071
EIFT YL++G+ + G VVD GAN+GLF+L P ++YAFEPIP ++D L RN+ N YD L A+ + + FTF+R + T+ S V A+ A L L + + D G Q + G D +D + F C + LS + E ++ ++LLK+DVE E VL G+ DWPKIRQ+V+E+HDVDG+L VV LL
Sbjct: 241 EIFTHLEYLRNGITIEDGDTVVDVGANIGLFTLFAGSRCPDARIYAFEPIPPVFDSLRRNVALHGLNAKVYD-----------CGLAAKATEETFTFYRHN-----------------------------TVISSSV------TTADQAHDLVRSYLRNQEELTDGG----------------------------------------------------------QDDTAGDELVDAVVDARLDSEQ--FTCRLRTLSEIIAEERIGRIDLLKIDVENAEYEVLKGIHWRDWPKIRQLVVELHDVDGQLEKVVTLL 450 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1065.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1065.12.1 >prot_A-nodosum_M_contig1065.12.1 ID=prot_A-nodosum_M_contig1065.12.1|Name=mRNA_A-nodosum_M_contig1065.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=473bp NPYLCLTTDRRSPLPSASGCPHSDDAGRTGQHDCSCAGGVRDVQWEIFTRback to top mRNA from alignment at A-nodosum_M_contig1065:33900..49600+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1065.12.1 ID=mRNA_A-nodosum_M_contig1065.12.1|Name=mRNA_A-nodosum_M_contig1065.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=15701bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:33900..49600+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1065:33900..49600+ >mRNA_A-nodosum_M_contig1065.12.1 ID=mRNA_A-nodosum_M_contig1065.12.1|Name=mRNA_A-nodosum_M_contig1065.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1419bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:33900..49600+ (Ascophyllum nodosum dioecious)back to top |