mRNA_A-nodosum_M_contig1061.12.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1061.12.2
Unique NamemRNA_A-nodosum_M_contig1061.12.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1061.12.2 vs. uniprot
Match: D8LBT3_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT3_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 4.210e-45
Identity = 98/184 (53.26%), Postives = 112/184 (60.87%), Query Frame = 1
Query:  562 AKISLPLPTVTKRPWRVPCAVARFERVHTGAKYGYGGENALFYEKSRPGYLADALRAIEDEIRRIRKDTTDDSHLLVDLGCGTGKFTREILPFARSEELSVIGIEPVEAMRKQFEAALPGVQVKDGRGDNIPLLNCSARAMIAPQSFHWMSSPETLREVHRVLVPGGLFILVWNTRDGSKSWVR 1113
            A++S  L  V  RP  VP +      VHT A  G+GG NA FYE +RPGY A ALRAIE EIRR     T    LLVDLG GTGKFTR ILPFA SE                            G G+ IP+ + SARA++APQSFHWMSS  TLREVHRVLVPGGLF+L+WNTRD ++ WVR
Sbjct:    5 ARLSALLSRV--RPPFVPPSTKAGRWVHTEAVGGFGGNNASFYENTRPGYPAHALRAIEAEIRR--SGLTGSGELLVDLGAGTGKFTRNILPFALSE----------------------------GAGEAIPIPDSSARALVAPQSFHWMSSAATLREVHRVLVPGGLFVLMWNTRDCTRPWVR 156          
BLAST of mRNA_A-nodosum_M_contig1061.12.2 vs. uniprot
Match: A0A3A6QMH5_9PSED (Class I SAM-dependent methyltransferase n=1 Tax=Pseudomonas sp. LS-2 TaxID=2315859 RepID=A0A3A6QMH5_9PSED)

HSP 1 Score: 153 bits (386), Expect = 1.720e-38
Identity = 102/286 (35.66%), Postives = 146/286 (51.05%), Query Frame = 1
Query:  640 VHTGAKYGYGGENALFYEKSRPGYLADALRAIEDEIRRIRKDTTDDSHLLVDLGCGTGKFTREILPFARSEELSVIGIEPVEAMRKQFEAALPGVQVKDGRGDNIPLLNCSARAMIAPQSFHWMSSPETLREVHRVLVPGGLFILVWNTRDGSKSWVRGLEGIIDPCYGTDVPRQHGGTWKRSFQDLEQQSGSGGESARERPRKFFGELVEQHFEHSVFLNKDE--LNRLVRSLSVVAIRPESEQADASRRIQELIESHPDTRDKLQNTGKVELFYDTEVYWCRRL 1491
            VHT A+ G+  + A  Y + RP Y  +AL         I   +T     +VDLG GT KFTR + P        +IG+EPV+AMR +F A LP VQ+  G   +IPL + +A A++  Q+FHW +    L E+HRVL PGG   L+WN RD S  WV  +  II P  G D PR H G W+R F                   ++F +     F +S   + D   +NR + S+S +A  P +++A  + +++ELI +HP     L+    V+  Y T+ Y C RL
Sbjct:    4 VHTAAQVGFSTQ-AGTYSQGRPDY-PEALNTWLSTALGIGPQST-----VVDLGAGTAKFTRLLKPLTEH----LIGVEPVDAMRNEFTAHLPDVQIVPGTAQSIPLADATADALVCAQAFHWFADTAALSEIHRVLKPGGRLGLIWNVRDESVDWVAEITRIITPYEG-DTPRFHTGHWRRPFDG-----------------RYFSQPASSCFNYSHSGSPDTVIMNRFL-SVSFIAALPAADKALVTDQLRELIGTHP----ALRGRETVDFPYQTQAYLCHRL 255          
BLAST of mRNA_A-nodosum_M_contig1061.12.2 vs. uniprot
Match: F2KEZ6_PSEBN (Methyltransf_11 domain-containing protein n=1 Tax=Pseudomonas brassicacearum (strain NFM421) TaxID=994484 RepID=F2KEZ6_PSEBN)

HSP 1 Score: 151 bits (382), Expect = 6.170e-38
Identity = 103/285 (36.14%), Postives = 148/285 (51.93%), Query Frame = 1
Query:  637 RVHTGAKYGYGGENALFYEKSRPGYLADALRAIEDEIRRIRKDTTDDSHLLVDLGCGTGKFTREILPFARSEELSVIGIEPVEAMRKQFEAALPGVQVKDGRGDNIPLLNCSARAMIAPQSFHWMSSPETLREVHRVLVPGGLFILVWNTRDGSKSWVRGLEGIIDPCYGTDVPRQHGGTWKRSFQDLEQQSGSGGESARERPRKFFGELVEQHFEHSVFLNKDELNRLVRSLSVVAIRPESEQADASRRIQELIESHPDTRDKLQNTGKVELFYDTEVYWCRRL 1491
            RVH  A+ GY  E A  Y K RP Y ++    + D +     D + +S  ++DLG GTGKFTR +     S ++ VI +EPV AMR +F   LP  ++  G  ++IPL + +A A+I  Q+FHW ++  TLRE+HRVL PGG   L+WN RD S  WV  +  II P  G D PR H G W+  F+         G    E     F ++      H+       L+R + S+S +A  P +E+   + ++  LI++HP     L     +E  Y T+ Y CRRL
Sbjct:    3 RVHKAAQQGYSTE-ASTYTKGRPDYPSEICTWLRDTL-----DISPES-TVIDLGAGTGKFTRLL----DSLDIDVIAVEPVRAMRVEFAKHLPDTRILAGTAESIPLEDRAADALICAQAFHWFANETTLREIHRVLKPGGRLGLIWNVRDESVDWVAAITKIITPYEG-DAPRFHTGNWQLPFK---------GHYFSEPELTCFKQI------HAGSAESVILDRFL-SVSFIAALPPAEKKVVTEKLLTLIQTHP----ALCGGKTIEFPYQTQAYLCRRL 255          
BLAST of mRNA_A-nodosum_M_contig1061.12.2 vs. uniprot
Match: A0A126S4J6_PSEPU (Methyltransferase n=17 Tax=Pseudomonas TaxID=286 RepID=A0A126S4J6_PSEPU)

HSP 1 Score: 147 bits (370), Expect = 2.800e-36
Identity = 96/284 (33.80%), Postives = 142/284 (50.00%), Query Frame = 1
Query:  640 VHTGAKYGYGGENALFYEKSRPGYLADALRAIEDEIRRIRKDTTDDSHLLVDLGCGTGKFTREILPFARSEELSVIGIEPVEAMRKQFEAALPGVQVKDGRGDNIPLLNCSARAMIAPQSFHWMSSPETLREVHRVLVPGGLFILVWNTRDGSKSWVRGLEGIIDPCYGTDVPRQHGGTWKRSFQDLEQQSGSGGESARERPRKFFGELVEQHFEHSVFLNKDELNRLVRSLSVVAIRPESEQADASRRIQELIESHPDTRDKLQNTGKVELFYDTEVYWCRRL 1491
            VHT A  G+  +++  YE+ RP Y       + D +        D    ++DLG GTGKFTR +   A      +  +EPV AMR++F   LP V V +G   +IPL + S + ++  Q+FHW +    LRE+HRVL PGG   L+WN RD +  WV  +  II P  G D PR H G W+ +F            S    P+      V +    +V L +      +RS+S +A  P++EQ     R+Q+L+++HP     L+   +V   Y T+ Y C+RL
Sbjct:    4 VHTSASTGFSRQSSN-YEQGRPDYPVALQGWLRDTLG------IDAGTPVLDLGAGTGKFTRLLTALAPR----LTAVEPVAAMRERFHERLPEVPVLEGTAQHIPLADASQQVLVCAQAFHWFADAAALREMHRVLAPGGRLGLIWNVRDETVDWVARITEIITPYEG-DTPRFHTGRWRDAFAG----------SRFSAPQLTTLPHVHEGNPQTVILER------LRSVSFIAALPQAEQDRVMARLQDLVDNHP----ALKGRERVAFPYQTQAYVCQRL 255          
BLAST of mRNA_A-nodosum_M_contig1061.12.2 vs. uniprot
Match: UPI0004842FB6 (class I SAM-dependent methyltransferase n=1 Tax=Paraburkholderia ferrariae TaxID=386056 RepID=UPI0004842FB6)

HSP 1 Score: 147 bits (370), Expect = 3.740e-36
Identity = 97/280 (34.64%), Postives = 136/280 (48.57%), Query Frame = 1
Query:  640 VHTGAKYGYGGENALFYEKSRPGYLADALRAIEDEIRRIRKDTTDDSHLLVDLGCGTGKFTREILPFARSEELSVIGIEPVEAMRKQFEAALPGVQVKDGRGDNIPLLNCSARAMIAPQSFHWMSSPETLREVHRVLVPGGLFILVWNTRDGSKSWVRGLEGIIDPCYGTDVPRQHGGTWKRSFQDLEQQSGSGGESARERPRKFFGELVEQHFEHS-VFLNKDELNRLVRSLSVVAIRPESEQADASRRIQELIESHPDTRDKLQNTGKVELFYDTEVY 1476
            VH  A  GY    A  Y + RP Y  +    + + +  +R   T     +VDLG GTGKFTR ++    S    VI IEPV AMR +  AALP V V+DG    +PL + S  A++  Q+FHW ++   L E+HRVL PGG F L+WN RD    WV  L+ I++   G D PR + G W+ +F                 P   FG L E HF        +D +   V+S S +A  P  +QA     ++ LI++ P     L+    V + Y+T  +
Sbjct:   10 VHRAAAVGYSPTAADHYVRGRPDYPPEVAHWLRETLG-LRAGQT-----VVDLGAGTGKFTRRLVETGAS----VIAIEPVAAMRAKLAAALPQVDVRDGAAQAMPLADASVDAVVCAQAFHWFANASALAEIHRVLKPGGRFGLIWNLRDARVDWVARLDAIVNRAEG-DTPRYYTGQWRAAF-----------------PFPGFGPLQEAHFSVGHTGSPEDVIVARVKSTSFIAALPADQQAQIEADVRALIDAEP----TLRGQTTVTVPYETAAF 257          
BLAST of mRNA_A-nodosum_M_contig1061.12.2 vs. uniprot
Match: A0A2H5DUM7_CHRS5 (SAM-dependent methyltransferase n=1 Tax=Chromobacterium sp. (strain ATCC 53434 / SC 14030) TaxID=2059672 RepID=A0A2H5DUM7_CHRS5)

HSP 1 Score: 145 bits (365), Expect = 1.360e-35
Identity = 101/286 (35.31%), Postives = 140/286 (48.95%), Query Frame = 1
Query:  640 VHTGAKYGYGGENALFYEKSRPGYLADALRAIEDEIRRIRKDTTDDSHLLVDLGCGTGKFTREILPFARSEELSVIGIEPVEAMRKQFEAALPGVQVKDGRGDNIPLLNCSARAMIAPQSFHWMSSPETLREVHRVLVPGGLFILVWNTRDGSKSWVRGLEGIIDPCYGTDVPRQHGGTWKRSFQDLEQQSGSGGESARERPRKFFGELVEQHFEHSVFLNKDELNRLVRSLSV--VAIRPESEQADASRRIQELIESHPDTRDKLQNTGKVELFYDTEVYWCRRL 1491
            +H  A+ G+  E A  YE+ RP Y  D    + + +        D   + +DLG GTGKFTR +   A      V  +EPV+ MR + +A LPG++   G  ++IPL + S   +   Q+FHW +S + LRE+HRVL PGG   LVWN RD S  WV  + G++ P  G D PR H G W+  F           ES+R     +F         HS  +   E   + RSLSV  +A  P+ E+   +  ++ LI S PD    L    +V   Y TE Y C RL
Sbjct:    4 IHQAARQGFAKE-AQAYERGRPAYSPDLAGWLRESLG------VDAGTVALDLGAGTGKFTRLLAGVAGE----VAAVEPVDQMRAELQAGLPGLKALKGTAESIPLPDASVDVVTCAQAFHWFASEDALREIHRVLKPGGRLGLVWNVRDESCRWVAKITGLLAPYEG-DTPRFHSGRWRLPF-----------ESSR-----YFSAPEPSVLPHS-HIGPPERVIVDRSLSVSFIAALPDDEKRRFAEALRRLIASDPD----LSGREEVAFPYRTEAYRCVRL 256          
BLAST of mRNA_A-nodosum_M_contig1061.12.2 vs. uniprot
Match: A0A2R6WAG2_MARPO (Methyltransf_11 domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WAG2_MARPO)

HSP 1 Score: 145 bits (366), Expect = 3.210e-35
Identity = 96/293 (32.76%), Postives = 146/293 (49.83%), Query Frame = 1
Query:  613 PCAVARFERVHTGAKYGYGGENALFYEKSRPGYLADALRAIEDEIRRIRKDTTDDSHLLVDLGCGTGKFTREILPFARSEELSVIGIEPVEAMRKQFEAALPGVQVKDGRGDNIPLLNCSARAMIAPQSFHWMSSPETLREVHRVLVPGGLFILVWNTRD-GSKSWVRGLEGIIDPCYGTDVPRQHGGTWKRSFQDLEQQSGSGGESARERPRKFFGELVEQHFEHSVFLNKDELNRLVRSLSVVAIRPESEQADASRRIQELIESHPDTRDKLQNTGKVELFYDTEVYWCRR 1488
            P + A   +VH  A  G+  E  + YE SRP Y  DA+  +E+ +     ++      ++DLG G+GKFTR +     S+   +  +EP  +MR  F   LP V + DG    IPL + S  A+I  Q+FHW +  ETLRE+HRVL PGG   LVWN  D  +K WV  L  + +  Y    P+   G WK+ +Q  E +             + F +L + HFEH     +D +   V S S VA + +  +A    ++  +++S  D   +   +G ++  Y T+VYWC +
Sbjct:   34 PPSNASAPKVHEVAVKGFDSE-PVAYESSRPSYPEDAVDCLEEHLGLRSGESA-----VLDLGAGSGKFTRLLA----SKNYHLTAVEPSPSMRATFADILPNVPILDGTAFAIPLESASQDAVIVAQAFHWFAQIETLREIHRVLKPGGRLGLVWNLEDRAAKKWVASLRDVYE-MYEMGTPQYRLGLWKKVWQTAEAE-------------ELFSKLEDAHFEHETLCTEDLVWGRVCSKSYVACQSDEVKARLREQVLAILKSADDL--ERDPSGLIKYPYKTDVYWCTK 300          
BLAST of mRNA_A-nodosum_M_contig1061.12.2 vs. uniprot
Match: A0A024HP93_PSEKB (Methyltransf_11 domain-containing protein n=2 Tax=Pseudomonas knackmussii TaxID=65741 RepID=A0A024HP93_PSEKB)

HSP 1 Score: 144 bits (362), Expect = 3.520e-35
Identity = 104/283 (36.75%), Postives = 138/283 (48.76%), Query Frame = 1
Query:  634 ERVHTGAKYGYGGENALFYEKSRPGYLADALRAIEDEIRRIRKDTTDDSHLLVDLGCGTGKFTREILPFARSEELSVIGIEPVEAMRKQFEAALPGVQVKDGRGDNIPLLNCSARAMIAPQSFHWMSSPETLREVHRVLVPGGLFILVWNTRDGSKSWVRGLEGIIDPCYGTDVPRQHGGTWKRSFQDLEQQSGSGGESARERPRKFFGELVEQHFEHSVFLNKDELNRLVRSLSV--VAIRPESEQADASRRIQELIESHPDTRDKLQNTGKVELFYDTEVY 1476
            E VH  A+ G+G E A  Y   RP Y  + L  + +     R   T  S   VDLG GTGKFTR +L         V  IEPV AMR +    LPGV+V +G    +PL + S  A++  Q+FHW +S   LRE+HRVL PGG   LVWN RD    WV  L  I+ P  G+  PR H G W+R+F                     FG L  + F H   +   E   + R+LS+  +A  P  ++A   +R+ +LI++HP  R + Q    V   Y TE Y
Sbjct:    2 ENVHASARQGFGLE-AQTYAHGRPDYPDELLEWMHE-----RLGITAGSKA-VDLGAGTGKFTRLLL----RSGAEVCAIEPVAAMRDKLAEELPGVRVLEGTAQGMPLADASQDAVLCAQAFHWFASAAALREIHRVLRPGGHLGLVWNVRDERVDWVAELTHIVAPYEGS-TPRFHTGEWRRAFAGAP-----------------FGPLQLREFSHQ-HVGPAEQVIVARTLSISFIAALPAEQKARVEQRLHDLIDNHPALRGQQQ----VAFPYRTEAY 250          
BLAST of mRNA_A-nodosum_M_contig1061.12.2 vs. uniprot
Match: UPI001E54566F (methyltransferase domain-containing protein n=4 Tax=Chromobacterium group TaxID=90153 RepID=UPI001E54566F)

HSP 1 Score: 142 bits (359), Expect = 9.070e-35
Identity = 98/287 (34.15%), Postives = 143/287 (49.83%), Query Frame = 1
Query:  634 ERVHTGAKYGYGGENALFYEKSRPGYLADALRAIEDEIRRIRKDTTDDSHLLVDLGCGTGKFTREILPFARSEELSVIGIEPVEAMRKQFEAALPGVQVKDGRGDNIPLLNCSARAMIAPQSFHWMSSPETLREVHRVLVPGGLFILVWNTRDGSKSWVRGLEGIIDPCYGTDVPRQHGGTWKRSFQDLEQQSGSGGESARERPRKFFGELVEQHFEHSVFLNKDELNRLVRSLSV--VAIRPESEQADASRRIQELIESHPDTRDKLQNTGKVELFYDTEVYWCRR 1488
            + +H  AK G+  E A  YE+ RP Y  +    ++ E+  +R D+      ++DLG GTGKFTR +   A      V  +EPV+ MR Q +  LPG++   G    IPL + S  A+   Q+FHW ++ + LRE+HRVL PGG   L+WN RD S  WV  +  ++ P  G D PR H G W+R F+ +                ++F       F HS  +   E   + R LSV  +A  P+ E+   +  ++ LI +HPD R +     +V   Y TE Y C R
Sbjct:    2 DTLHGQAKAGFAKE-AQAYERGRPEYAPELADWLKRELG-LRLDSA-----VLDLGAGTGKFTRLLATVAGE----VAAVEPVDEMRAQLQTRLPGLRALKGTAGEIPLPDASMDAIACAQAFHWFANEDALREIHRVLKPGGSLGLIWNVRDESCDWVARISELLAPYEG-DTPRFHSGAWRRPFEAV----------------RYFAAPALTMFSHS-HVGPPERVIVDRFLSVSFIAALPDDEKRLFAEALRRLIYTHPDLRGR----DEVAFPYRTEAYRCLR 255          
BLAST of mRNA_A-nodosum_M_contig1061.12.2 vs. uniprot
Match: UPI001EFFDFD1 (methyltransferase domain-containing protein n=1 Tax=Methylobacterium sp. SyP6R TaxID=2718876 RepID=UPI001EFFDFD1)

HSP 1 Score: 142 bits (359), Expect = 9.070e-35
Identity = 104/286 (36.36%), Postives = 138/286 (48.25%), Query Frame = 1
Query:  640 VHTGAKYGYGGENALFYEKSRPGYLADALRAIEDEIRRIRKDTTDDSHLLVDLGCGTGKFTREILPFARSEELSVIGIEPVEAMRKQFEAALPGVQVKDGRGDNIPLLNCSARAMIAPQSFHWMSSPETLREVHRVLVPGGLFILVWNTRDGSKSWVRGLEGIIDPCYGTDVPRQHGGTWKRSFQDLEQQSGSGGESARERPRKFFGELVEQHFEHSVFLNKDELNRLVRSLSV--VAIRPESEQADASRRIQELIESHPDTRDKLQNTGKVELFYDTEVYWCRRL 1491
            +H  A  G+    A  Y + RP Y A AL A   E  R+     +    + DLG GTGKFTR +     +    V  IEPV+AMR Q  A+LPGV  + G  + +PL + S  A++  Q+FHW S+   L E+ RVL  GG F LVWN RD    WV  L  I++   G D PR H G W+  F                 P + FG L E  F H       E   L R+LSV  +A  PE+E+A  ++ +++LI   P+    L     V   Y T VYWC R+
Sbjct:    4 LHPAAAGGFSA-GAETYARGRPDYPA-ALSAWLRETLRL-----EPGRSVADLGAGTGKFTRLLA----TTGADVTAIEPVDAMRAQLAASLPGVTARPGSAEAMPLADASLDALVCAQAFHWFSTKAALAEIRRVLKVGGRFGLVWNVRDDGTPWVAELTTIMNAHEG-DAPRYHTGVWRGLF-----------------PAEGFGPLHEASFPHG-HTGTPEQVILDRTLSVSFIAALPEAERAKVAQSVRDLIARTPE----LAGRDAVTFPYRTFVYWCERV 255          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1061.12.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBT3_ECTSI4.210e-4553.26Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A3A6QMH5_9PSED1.720e-3835.66Class I SAM-dependent methyltransferase n=1 Tax=Ps... [more]
F2KEZ6_PSEBN6.170e-3836.14Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A126S4J6_PSEPU2.800e-3633.80Methyltransferase n=17 Tax=Pseudomonas TaxID=286 R... [more]
UPI0004842FB63.740e-3634.64class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
A0A2H5DUM7_CHRS51.360e-3535.31SAM-dependent methyltransferase n=1 Tax=Chromobact... [more]
A0A2R6WAG2_MARPO3.210e-3532.76Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A024HP93_PSEKB3.520e-3536.75Methyltransf_11 domain-containing protein n=2 Tax=... [more]
UPI001E54566F9.070e-3534.15methyltransferase domain-containing protein n=4 Ta... [more]
UPI001EFFDFD19.070e-3536.36methyltransferase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1061contigA-nodosum_M_contig1061:180179..184999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBT3
PFAMsMethyltransf_11,Methyltransf_25
Model size2055
Max annot lvl2759|Eukaryota
KEGG koko:K08143,ko:K14300
KEGG TC1.I.1,2.A.1.1.13
KEGG Pathwayko03013,ko04973,map03013,map04973
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005975,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009636,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0042221,GO:0044237,GO:0044238,GO:0044262,GO:0046547,GO:0050896,GO:0051716,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1990748
Exons9
Evalue6.48e-49
EggNOG OGsCOG0500@1|root,KOG3010@2759|Eukaryota
Descriptiontrans-aconitate 3-methyltransferase activity
Cds size963
COG categoryQ
BRITEko00000,ko00001,ko00002,ko02000,ko03019,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1061.12.2prot_A-nodosum_M_contig1061.12.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1061 181659..184438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866448.2171755-UTR-A-nodosum_M_contig1061:180178..1804701680866448.2171755-UTR-A-nodosum_M_contig1061:180178..180470Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1061 180179..180470 +
1680866448.2282078-UTR-A-nodosum_M_contig1061:180921..1810011680866448.2282078-UTR-A-nodosum_M_contig1061:180921..181001Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1061 180922..181001 +
1680866448.2371967-UTR-A-nodosum_M_contig1061:181499..1816581680866448.2371967-UTR-A-nodosum_M_contig1061:181499..181658Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1061 181500..181658 +
1680866448.312443-UTR-A-nodosum_M_contig1061:184438..1849991680866448.312443-UTR-A-nodosum_M_contig1061:184438..184999Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1061 184439..184999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866448.2460372-CDS-A-nodosum_M_contig1061:181658..1818281680866448.2460372-CDS-A-nodosum_M_contig1061:181658..181828Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1061 181659..181828 +
1680866448.2584577-CDS-A-nodosum_M_contig1061:182008..1821601680866448.2584577-CDS-A-nodosum_M_contig1061:182008..182160Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1061 182009..182160 +
1680866448.2676957-CDS-A-nodosum_M_contig1061:182386..1824701680866448.2676957-CDS-A-nodosum_M_contig1061:182386..182470Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1061 182387..182470 +
1680866448.2768495-CDS-A-nodosum_M_contig1061:182791..1829661680866448.2768495-CDS-A-nodosum_M_contig1061:182791..182966Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1061 182792..182966 +
1680866448.285418-CDS-A-nodosum_M_contig1061:183333..1834321680866448.285418-CDS-A-nodosum_M_contig1061:183333..183432Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1061 183334..183432 +
1680866448.2949529-CDS-A-nodosum_M_contig1061:183811..1839521680866448.2949529-CDS-A-nodosum_M_contig1061:183811..183952Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1061 183812..183952 +
1680866448.304491-CDS-A-nodosum_M_contig1061:184296..1844381680866448.304491-CDS-A-nodosum_M_contig1061:184296..184438Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1061 184297..184438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1061.12.2

>prot_A-nodosum_M_contig1061.12.2 ID=prot_A-nodosum_M_contig1061.12.2|Name=mRNA_A-nodosum_M_contig1061.12.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=321bp
MHHTRVLHAFAKISLPLPTVTKRPWRVPCAVARFERVHTGAKYGYGGENA
LFYEKSRPGYLADALRAIEDEIRRIRKDTTDDSHLLVDLGCGTGKFTREI
LPFARSEELSVIGIEPVEAMRKQFEAALPGVQVKDGRGDNIPLLNCSARA
MIAPQSFHWMSSPETLREVHRVLVPGGLFILVWNTRDGSKSWVRGLEGII
DPCYGTDVPRQHGGTWKRSFQDLEQQSGSGGESARERPRKFFGELVEQHF
EHSVFLNKDELNRLVRSLSVVAIRPESEQADASRRIQELIESHPDTRDKL
QNTGKVELFYDTEVYWCRRL*
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mRNA from alignment at A-nodosum_M_contig1061:180179..184999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1061.12.2 ID=mRNA_A-nodosum_M_contig1061.12.2|Name=mRNA_A-nodosum_M_contig1061.12.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4821bp|location=Sequence derived from alignment at A-nodosum_M_contig1061:180179..184999+ (Ascophyllum nodosum dioecious)
GAGATTTTCTGTGCCAATAATCAAAGGAATTAAGGTACACACAAGTAAAA CCAGCGCAAAAAAGTATAGATCAACCGGGTAAGGGCAATCCTGCTCGTGG TCAGCTAAACAGGGCAAACCATTTTTTCCCTGTCTCCGTTCGTACCTGAG AATTTGGTCTCGTGAGACAGGTTCGACCGTCCCGTCCCGCGCCAGCCTGC TCATTCTCCATACTCAGGTTGAATCTGGTGCTTACTGACGGGATTCCCCC AGCTTCAGCGACGGTATCCATTTTACAATCAACTGCCATCAGGTCAGTCC CGAGTTTGTCAGGTCACGTAATTACGTACCGATGGCGTTCACTGCCGAGA CCCCGCCGGCACAGGGCCAGTAGTCCTCAAGGTAGTCCCAGTGACGGGTG CTGCCTTTTTGAGGTATCACCATGGGCCAATTTTTGTGCGCCTTTCTTTT CCCATATCCAGTGTTGGTACAAGGGAGTGGATATGTGTGATGCAGAAAGT ATCGGAGGCGATAGAGCAGAACCGCCGGTACTGCTGAACCCGTCTCGCGA GAACAAATTCTCAGGCGTGAACGGAGACAGTGAAGTACTACGTATTCATT TTCCGTGTTCAGCTGACCACGAGTAGGGTTGGCAACCTTCCCCGGTTGAT CCATACTCTGCTATATGTGATGACCATACATACATACAAACATACATACA TACATACATACTCTTGGCATCCCTGCCCCTTCTCTGGGAGCAGCGGGGAA GATTTGCACGAGACATGGGCTAGGGATCTATCCATCTCTAGCGTGATTGC GAGCAGCGTTCATCGTGATCGAGGTATCGGGTGCCTACGAGTATTGAGTG TTCAATATCTGGTTTAACGTACAGTTTGAGCGGTGGAGGTCTGTGACGAC GCTACAACCGGAGGGAAAGCGGGCCGGTCGGATGTTTAGACAGAAGTGAA AGGATTATTGATTTGTGTCATACCTCCACGGAGTAGCTCTGAACGTATCA TCATTTTCCGAGGGATGAGTGTTGTCTTTCGTGAGGGATCCGCCGCAGAT ATTCACACGTCACCCGCAATCTCCTGGCGTGTTCGAGCCTGTCTCGTGTT CCTCGTGGTTCGCTTCTGGAACTACCGAGAGACCATGAGTAGCGAGCGTC AGCCATGATGTATATAAGCCCGTTGACTTCGGCACTACCGTATCGATCCA CAGCCGGGATTCCGGGGGTGGATGCCGTGATGTTAGAAGCAAAGCTTCCG GGTCGGCTCGTGACGTTCCCGCTCCTGCCATCCTCTTCCCTCTTCTTTCC TCGCTGCTTTCCCTCCGGTAGCCGAAAGGCGGCCAAGACGGCACAATAAG GCAAGGCGAACGCGAGCTGAGGTTGGCAAAACAAGAAGACGGCCCTTCGC TCGAACCTAACTTTGGCGGATCTTACGCGGCGTTCTCGCCCTACCGACAC AAACCACCGTTGTTGTCGATTTCTACGACCATGCATCACACCCGTGTGCT CCATGCATTCGCGAAAATATCGTTGCCGTTGCCGACGGTGACGAAGCGTC CTTGGCGCGTTCCCTGTGCCGTTGCGCGTTTTGAACGAGTGCATACGGGA GCGAAATACGGCTACGGGGGCGAGAACGCGCTTTTCTACGAGAAGTCAAG GTGAGGCTTGCTTCGTGCCAGCAGTCTTGTTGGTCAGCGCCCTCCCTCGA TCGTGCACGATCATCCGCAGGAGATCGATGGAAACGTTTCTTTTCACTTG TCGCGTCGCGAACTTTAAAAACTCTCACCAGTCACATTATTTTGTTCCCT GACGCGTCGGATCCCGCCGCATCGCTGAAGACCTGGCTACCTGGCCGATG CCCTACGTGCAATAGAGGACGAGATTCGTCGAATTAGAAAGGACACCACC GACGATTCTCATTTGCTGGTTGATCTAGGGTGCGGCACCGGCAAGTTCAC TCGCGAAATTTTGCCATTCGCACGCTCGGAAGGTAAGCAAACGAACGGAA ACTTTTTCTTCTGGATTTATCTGCTGTATTTATTGTCTACGCGCAGGCTC TATGGTAGTGTGACGCCCGCGCCAACCGCACGATGACTCCACCAACCGTA CGGAGCCCTCTTTTGTTGCTCCGTAGTACATCTCTCACCGGGAGCAAAGC CGCTTGAAAGGCTCCTGCCCGATGATTATTCGATTTCGGACGATCCTCTA CTCGAAAGAATTGTCAGTTATCGGAATCGAACCTGTGGAAGCCATGCGGA AGCAGTTTGAAGCAGCTTTGCCCGGCGTACAAGTCAAAGATGGTGAGGGG ACAAAAGTTAGACCCCCACGAGCAAATCTTCTGGTGTAGCGGAGACTCAT AAAGTATCAGAGTACCCCACGCGGAAGGCGCGTGCCCGTGAGGTCCAGTC GCGGTCCGTGGTAGACGCTCGTGGAGCGGAGTCCGGTTTCCCTAAGCATA GTAAATAATGTACATGTAAAATTTCGTGCCGCCCACCGCTCAATAACAGT AGCATTGACGTTGCTGACTGCCCTTGCCGCGAGCATGACCGGGGTGTGCG AAATTCCTCGAATATTCGGCGGTCACTCGTATACAAGCCTCTCCCCGCCG CCTCGTTAAACAGGCAGGGGAGATAACATTCCCCTCCTAAATTGCTCCGC TCGGGCGATGATCGCCCCGCAAAGCTTTCACTGGATGTCCTCGCCGGAGA CTCTTCGCGAGGTACACCGCGTCCTTGTCCCCGGGGGGCTGTTTATTCTA GTGTGGAATACCCGTGACGGCTCGAAGAGCTGGGTTCGGTGAGATATCGT TGGACCGATAATATGTTGGTTGTACGACAACATATTTCGCCGCCTATTTG CTCCTATGAGGGCGCAGACAGCACAGAGGATGGCTGCGGGCGTTGCCGCT TGCCCAACCAGCGATAAATCCAACCCCGATGACATGGAACACGCGAAGAA AACCGCGCTTCGGATTGTACGTCGCTCACCTCCATCAAACGACCACAAAC TCATAAGCTCATTATATTTTGTGGCAATATCTAGGAGTCGTGCCGAACGA GCTTTCCCCCCCCACACTTTCTGGTAGCTTGTTGAACGCTACTGAGCTCG TTGCTTGGACGTAAATGTTGCGAGACAATGCCCTATGTTTTCCCTCTATC GACAGGGGTCTGGAAGGCATCATAGATCCATGCTACGGCACTGACGTTCC TAGACAGCATGGAGGAACATGGAAACGGTCGTTTCAAGACTTGGAGCAGC AGAGGTCAGTAAGCAGATGCCGCCTCCTCCGAAGTGTAGTTGATGCGGGG TGCTGTTGTATTTCTACACGCTCGAAGCTGGTTGATTCTGATGTTCCCTT TGGTAAGGCAATTCGCGTAAAACAAAATGCCGGTAGACTTTGAAATTTTG TTTTATGTGCTTTCACCACAAGGTGCGGGTGCTTCTTCGCACGTATCTGG GATAATGAGATGGTCCGCTAGCTGTAATAGAATGTAATGCACCCCGAACG GATCCCCTTTGGATCCACATCATACGCGTTGATACCGTATCTGCTTGTGC CCTAGCATTCCCGTTACCACAGACACTTCTGACCTATTATATTTATTATT TTGTCTATCTATGTGGATCAATGCCTCGCGCAGCGGAAGTGGAGGGGAGA GCGCGAGAGAAAGACCCCGAAAGTTCTTTGGCGAGTTAGTCGAGCAACAC TTCGAGCACTCGGTCTTTCTAAACAAAGACGAGCTGAATAGGCTCGTCCG GAGCCTCAGCGTCGTCGCGATAAGGTTTGTGTGTCTGTGCGCAATGCGGT CGTTAGTGCGCTTTTTGAGAGTATCTCCGACTGCGTCAGATTTCTATGCG AAGAATAAGGGTTGATGAGCTTCTTCCTCGCCCGAGAGAACATACTGTGC CGTTCAGAGTCCATCGAATGCAGCAGTCTTCCTCGCCATGTGACGTTTTA TTCATTGAGTATGGAGGGGCTTTTCCCTCGTTTCTCCTTTGCTCGCTGCC CCGCTATCCCCTTCTCCAGTACCTTCAAATGATGCAGTTGTCGTGAATCC CGCAATCGCGCGCAACGTCCCCCCATTCCCAACTTTCTTCCAACTGCCGC CCTTTTGCCCGATATTAGACCGGAATCTGAGCAGGCGGATGCTTCACGCC GTATTCAGGAGCTGATCGAGAGTCATCCAGACACTCGTGATAAACTGCAG AACACTGGGAAGGTCGAGCTTTTTTATGATACCGAAGTATACTGGTGCCG AAGGCTGTAAAACGCGCCTGTCTGGTGTTATGCGTCAGAATTTGCTCAGG TAGTGTCGGATGTTATCGTGCCCAGCGTAAATAAGTGGGAGGAGTGCGGA TTCTTTCTAGTAATGTTATAGTGTCCCGGCTCCACTAGACAAGGTGAAGC TTAGCTCAATCTATGGCGTGCTAACTTGACTTTTTCATATGTTATCAATG CGGCATCTTGGAAAAGGACTGCGACGCGGGGCGAATATTTGACGGCACAA GCGACGGGGGAAAAAGCTTGGTAAGACTACGAGATAGCTAGTAGTGTCTT CTCGTCATGAGGCAAATTTTGCTCAACTGTTTTTACATGGTAGATTACTT GGATCACGTTTTGATTCTACTTGCCAGGAGTTAGGCGGCGAACAAGGGCG TACGGAAGTACACATACAGAAACCCGTTGAACTAGCGTGGAGTATACGCA GGTATATATCCGCGGAGAGTTTACCGTCTGCTCAGGGCGACTAAATATCT GCACGAATGCTCATGTCATGCTCTGGGACAAGGTAGTTTCATAGACACAA CAAAATCGCCCAAAGGCACCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1061:180179..184999+

>mRNA_A-nodosum_M_contig1061.12.2 ID=mRNA_A-nodosum_M_contig1061.12.2|Name=mRNA_A-nodosum_M_contig1061.12.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=963bp|location=Sequence derived from alignment at A-nodosum_M_contig1061:180179..184999+ (Ascophyllum nodosum dioecious)
ATGCATCACACCCGTGTGCTCCATGCATTCGCGAAAATATCGTTGCCGTT
GCCGACGGTGACGAAGCGTCCTTGGCGCGTTCCCTGTGCCGTTGCGCGTT
TTGAACGAGTGCATACGGGAGCGAAATACGGCTACGGGGGCGAGAACGCG
CTTTTCTACGAGAAGTCAAGACCTGGCTACCTGGCCGATGCCCTACGTGC
AATAGAGGACGAGATTCGTCGAATTAGAAAGGACACCACCGACGATTCTC
ATTTGCTGGTTGATCTAGGGTGCGGCACCGGCAAGTTCACTCGCGAAATT
TTGCCATTCGCACGCTCGGAAGAATTGTCAGTTATCGGAATCGAACCTGT
GGAAGCCATGCGGAAGCAGTTTGAAGCAGCTTTGCCCGGCGTACAAGTCA
AAGATGGCAGGGGAGATAACATTCCCCTCCTAAATTGCTCCGCTCGGGCG
ATGATCGCCCCGCAAAGCTTTCACTGGATGTCCTCGCCGGAGACTCTTCG
CGAGGTACACCGCGTCCTTGTCCCCGGGGGGCTGTTTATTCTAGTGTGGA
ATACCCGTGACGGCTCGAAGAGCTGGGTTCGGGGTCTGGAAGGCATCATA
GATCCATGCTACGGCACTGACGTTCCTAGACAGCATGGAGGAACATGGAA
ACGGTCGTTTCAAGACTTGGAGCAGCAGAGCGGAAGTGGAGGGGAGAGCG
CGAGAGAAAGACCCCGAAAGTTCTTTGGCGAGTTAGTCGAGCAACACTTC
GAGCACTCGGTCTTTCTAAACAAAGACGAGCTGAATAGGCTCGTCCGGAG
CCTCAGCGTCGTCGCGATAAGACCGGAATCTGAGCAGGCGGATGCTTCAC
GCCGTATTCAGGAGCTGATCGAGAGTCATCCAGACACTCGTGATAAACTG
CAGAACACTGGGAAGGTCGAGCTTTTTTATGATACCGAAGTATACTGGTG
CCGAAGGCTGTAA
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