mRNA_A-nodosum_M_contig1060.4.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1060.4.2
Unique NamemRNA_A-nodosum_M_contig1060.4.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1060.4.2 vs. uniprot
Match: D8LEE8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE8_ECTSI)

HSP 1 Score: 737 bits (1903), Expect = 2.670e-255
Identity = 379/443 (85.55%), Postives = 404/443 (91.20%), Query Frame = 1 
Query:  775 APGGATKVHVEGMSVTPLKDFADVDMPPEVMRYVTLQKWKEPTPIQAYCWPVLNAGRDVVGIAETGSGKTLAFSLPAMARIVKRAKA-RRNEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACIYGGVPKWEQKKALGGA-GGCCVQVVVATPGRLKDLVGEGACDLSQVTSLVLDEADRMLDLGFEQDVRDIIGCCAKAGERQTAMFSATWPKSIRDLAAEFLTRPVKVNVGDDELTANSRVEQHVEVVEERERDGKLLRLLAKCHGSRNNRVLVFALYKREAARLEQFLQRNSFDAVAVHGDKGQGDRERALGQFKSKECPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTFFHQGDKARAGELVNVLQDANQSVPEALMRFGTHVKKKEHKLYGAFAKDVDMDKKSKKTTFDDSDDE 2097
            A G  +KVH+EGM VTPLKDFA   MP EVM+YVTL+ W +PT IQA+CWPVLNAGRDV+GIAETGSGKTL FSLPAM++I K  KA +++EGP+MLVLAPTRELALQSAEVIAEAG HCG++S C+YGGVPK +QK ALGG  GG CVQVVVATPGRLKDLVGEGACDLS+VTSLVLDEADRMLDLGFEQDVRDIIG CA   +RQTAMFSATWPKSIRDLAAEFL  PVKV VG D+LTAN RVEQHVEVVEERERDGKLLRLLA CH SR NRVLVFALYKREAARLEQFLQRN+FDAVAVHGDKGQ DRERALGQFKSKE PLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHT+FHQGDKARAGELVNVLQDANQSVPEAL +FGTHVKKKEHKLYGAFAKDVDMD+K+ KTTFDDSDDE
Sbjct:  142 ATGAGSKVHIEGMKVTPLKDFASSGMPAEVMKYVTLRGWDKPTLIQAHCWPVLNAGRDVIGIAETGSGKTLGFSLPAMSKIFKNMKAGKKSEGPYMLVLAPTRELALQSAEVIAEAGGHCGIKSVCVYGGVPKRDQKIALGGGRGGGCVQVVVATPGRLKDLVGEGACDLSKVTSLVLDEADRMLDLGFEQDVRDIIGYCAGPSKRQTAMFSATWPKSIRDLAAEFLADPVKVTVGADDLTANYRVEQHVEVVEERERDGKLLRLLATCHKSRKNRVLVFALYKREAARLEQFLQRNNFDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTYFHQGDKARAGELVNVLQDANQSVPEALTKFGTHVKKKEHKLYGAFAKDVDMDRKATKTTFDDSDDE 584
[Close]
BLAST of mRNA_A-nodosum_M_contig1060.4.2 vs. uniprot
Match: A0A835YU16_9STRA (DEAD box RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU16_9STRA)

HSP 1 Score: 540 bits (1392), Expect = 1.400e-177
Identity = 283/407 (69.53%), Postives = 320/407 (78.62%), Query Frame = 1 
Query:  787 ATKVHVEGMSVTPLKDFADVDMPPEVMRYVTLQKWKEPTPIQAYCWPVLNAGRDVVGIAETGSGKTLAFSLPAMARIVKR---AKARRNEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACIYGGVPKWEQKKALGGAGGCCVQVVVATPGRLKDLVGEGACDLSQVTSLVLDEADRMLDLGFEQDVRDIIGCCAKAGERQTAMFSATWPKSIRDLAAEFLTRPVKVNVGDDELTANSRVEQHVEVVEERERDGKLLRLLAKCHGSRNNRVLVFALYKREAARLEQFLQRNSFDAVAVHGDKGQGDRERALGQFKSKECPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTFFHQGDKARAGELVNVLQDANQSVPEALMRFGTH 1998
            A  + VEGM VTPL DF     P +++ YV  QK++ PTPIQ+YCWPVL AGRD+VGIAETGSGKTLAF LP + R++ +   +       P MLVLAPTRELA+QSAEVIA AG   GV  AC+YGGVPK EQK+AL  A     + VVATPGRLKDL+ EGA DLS V  +VLDEADRMLDLGFEQDVRDIIG  A+A  RQTAMFSATWP+ IR LAAEFL  PV+V VGDD+LTAN+RV QHVEV+ ERERD +LL LL K HG+R+NRVLVFALYK+EAARLE  L R  + AVAVHGDKGQ DRERAL  F+SK  PLM+ATDVAARGLDIPDVE+VINYSFPL    YIHRIGRTGRAGK GVS+TFFHQGDKARAGELVNVL +A  +VP  L+RFGTH
Sbjct:  187 AAPITVEGMDVTPLADFDGAGFPAKLLAYVLAQKFERPTPIQSYCWPVLGAGRDIVGIAETGSGKTLAFGLPGLTRVLAQKGGSGGXXGARPEMLVLAPTRELAIQSAEVIAAAGAAAGVACACVYGGVPKGEQKRALRSA-----RAVVATPGRLKDLMSEGAVDLSGVVYMVLDEADRMLDLGFEQDVRDIIGATARA--RQTAMFSATWPREIRALAAEFLREPVRVTVGDDDLTANARVAQHVEVIGERERDARLLELLEKVHGARDNRVLVFALYKKEAARLEALLSRRGYSAVAVHGDKGQADRERALAAFRSKSVPLMIATDVAARGLDIPDVEFVINYSFPLETSSYIHRIGRTGRAGKTGVSYTFFHQGDKARAGELVNVLTEAGAAVPPELLRFGTH 586
[Close]
BLAST of mRNA_A-nodosum_M_contig1060.4.2 vs. uniprot
Match: A0A7S3XUU1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU1_HETAK)

HSP 1 Score: 522 bits (1344), Expect = 1.890e-171
Identity = 277/432 (64.12%), Postives = 330/432 (76.39%), Query Frame = 1 
Query:  823 PLKDFADVDMPPEVMRYVTLQKWKEPTPIQAYCWPVLNAGRDVVGIAETGSGKTLAFSLPAMARIVK-----RAKARRNEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACIYGGVPKWEQKKALGGAGGCCVQVVVATPGRLKDLVGEGACDLSQVTSLVLDEADRMLDLGFEQDVRDIIGCC----AKAGERQTAMFSATWPKSIRDLAAEFLTRPVKVNVGDDELTANSRVEQHVEVVEERERDGKLLRLLAKCHGSRNNRVLVFALYKREAARLEQFLQRNSFDAVAVHGDKGQGDRERALGQFKSKECPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTFFHQGDKARAGELVNVLQDANQSVPEALMRFGTHVKKKEHKLYGAFAKDVDMDKKSKKTTFDDSD 2091
            P + F +   PPEV+     + +  PTPIQA CWP+L+AGRD++G+AETGSGKTLAFSLPA+ARI +     +A +R+  GP MLV+ PTRELA Q A VI  AG   G+RS C+YGGVPK EQK+ L  A G    VVVATPGRL+DL+ E A DL +V  LVLDEADRMLDLGFEQD+R IIG C    A AG R+TAMFSATWP+ +R+LAAEFL RPV+V +G  +L AN+RV Q VEV+ ERER  +L +LL + H  RN RV+VF LYK+E +RLE  L+R  +   A+HGDKGQG RE AL  F+ ++ P+++ATDVAARGLDIPDVE VINYSFPLTIEDY+HRIGRTGRAGK GVSHT FH+GDKARAGELVNVL  A   VP AL++FGTHVKKKEHKLYGAFAKDVD+ KK+ K TFDDSD
Sbjct:  144 PHQTFGEAGFPPEVLG--GCEGFTAPTPIQAQCWPILSAGRDLIGVAETGSGKTLAFSLPALARIHRELGGGKALSRQRPGPLMLVICPTRELAQQCAAVIETAGAGAGLRSVCVYGGVPKHEQKRKLQNAQGGA-HVVVATPGRLRDLMSENAVDLGRVAHLVLDEADRMLDLGFEQDMRAIIGACPAPGAAAGGRRTAMFSATWPREVRELAAEFLDRPVRVTIGGSKLAANARVSQCVEVMGERERGARLQQLLERYHDGRN-RVIVFGLYKKECSRLEGDLRRAGWKVGAIHGDKGQGAREAALEDFRQQKVPILIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKSGVSHTLFHEGDKARAGELVNVLTKAGAEVPAALLKFGTHVKKKEHKLYGAFAKDVDLTKKATKITFDDSD 571
[Close]
BLAST of mRNA_A-nodosum_M_contig1060.4.2 vs. uniprot
Match: A0A5D6YE84_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YE84_9STRA)

HSP 1 Score: 516 bits (1330), Expect = 2.180e-169
Identity = 269/424 (63.44%), Postives = 328/424 (77.36%), Query Frame = 1 
Query:  823 PLKDFADVDMPPEVMRYVTLQKWKEPTPIQAYCWPVLNAGRDVVGIAETGSGKTLAFSLPAMARIVKR-AKARRNEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACIYGGVPKWEQKKALGGAGGCCVQVVVATPGRLKDLVGEGACDLSQVTSLVLDEADRMLDLGFEQDVRDIIGCCAKAGERQTAMFSATWPKSIRDLAAEFLTRPVKVNVGDDELTANSRVEQHVEVVEERERDGKLLRLLAKCHGSRNNRVLVFALYKREAARLEQFLQRNSFDAVAVHGDKGQGDRERALGQFKSKECPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTFFHQGDKARAGELVNVLQDANQSVPEALMRFGTHVKKKEHKLYGAFAKDVDMDKKSKKTTFDDSD 2091
            P++ FADV    + ++  T   + +PTPIQ+ CWP+L +GRD++GIAETGSGKTLAFS+P +  I  + A + +  GP MLV+APTRELA+QS+EVI +AGK CG+RS CIYGGVPK EQKK L       V VVVATPGRLKDL+ E ACDLS+VT +VLDEADRMLD GFE+D+R IIG  A   ERQ AMFSATWP+SI+ LA EFL  PVKV +G D+L A+  V Q VEVV++R RD ++  LL K H SR NRVL+F LYK+EA R+E+ LQ+  +   A+HGD+ Q  R  A+ QFKS + PL++ATDVAARGLDIPDVEYV+NYSFPLTIEDY+HRIGRTGR GKKG +HTFF   DK RAGELVN+L+D+NQ VP  L +FGTHVKKKEHKLYGAFAK+VD++KK+ K TFDDSD
Sbjct:  156 PIRSFADVTFDAKFLK--TTAGFSKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPALSPKFSGPRMLVVAPTRELAMQSSEVITQAGKQCGLRSTCIYGGVPKHEQKKILRNG----VHVVVATPGRLKDLLEERACDLSKVTFVVLDEADRMLDEGFEKDIRRIIG--ATHPERQIAMFSATWPQSIQKLAHEFLVDPVKVTIGSDDLAASQNVTQLVEVVDDRGRDARVHTLLQKYHSSRRNRVLLFVLYKKEADRVERMLQQKGWTCAAIHGDRNQAQRTEAVEQFKSGKIPLLIATDVAARGLDIPDVEYVLNYSFPLTIEDYVHRIGRTGRGGKKGTAHTFFTANDKPRAGELVNLLRDSNQEVPADLTKFGTHVKKKEHKLYGAFAKNVDVNKKATKITFDDSD 571
[Close]
BLAST of mRNA_A-nodosum_M_contig1060.4.2 vs. uniprot
Match: T0RX20_SAPDV (Uncharacterized protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0RX20_SAPDV)

HSP 1 Score: 509 bits (1310), Expect = 7.180e-167
Identity = 266/426 (62.44%), Postives = 323/426 (75.82%), Query Frame = 1 
Query:  823 PLKDFADVDMPPEVMRYVTLQKWKEPTPIQAYCWPVLNAGRDVVGIAETGSGKTLAFSLPAMARIVKRAKAR-RNEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACIYGGVPKWEQKKALGGAGGCCVQVVVATPGRLKDLVGEGACDLSQVTSLVLDEADRMLDLGFEQDVRDIIGCCAKAGERQTAMFSATWPKSIRDLAAEFLTRPVKVNVGDDELTANSRVEQHVEVVEERERDGKLLRLLAKCHGSRNNRVLVFALYKREAARLEQFLQRNSFDAVAVHGDKGQGDRERALGQFKSKECPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTFFHQGDKARAGELVNVLQDANQSVPEALMRFGTHVKKKEHKLYGAFAKDVDMDKKSKKTTFDDSDDE 2097
            P+  FAD   P  +++  + + + +PTPIQ+ CWP+L +GRD++GIA+TGSGKTLAFS+P +  I  + K   + +GP MLV+APTRELA+Q A+VIA AGK   + S C+YGGVPK EQK+AL       VQVVVATPGRLKDLV E +C L+ V+ +VLDEADRMLD GFE+D+R I+  C    ERQ AMFSATWP+SI+ LA EFL  PVKV +G D+L A+  V Q VEVV+E  RD KL  LL K HGSR NRVLVF LYK+EA R+E  LQR  +   A+HGDKGQ  R  AL  FKS   PL++ATDVAARGLDIPDVE+V+NYSFPLTIEDY+HRIGRTGR GKKG+SHTFF   DK +AGELVN+L+++N  VPE L +FGTHVKKKEHKLYGAFAK+VDM+KK+ K TF DSDDE
Sbjct:  122 PILSFADAPFPKAMLK--SCENFAKPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFSVPGLVHITDQLKTNPKKKGPIMLVVAPTRELAVQCADVIAVAGKSVNINSLCLYGGVPKHEQKRALKAG----VQVVVATPGRLKDLVQEKSCSLANVSYIVLDEADRMLDDGFEKDIRLIMAECH--AERQIAMFSATWPQSIQKLAHEFLEDPVKVTIGSDDLAASENVTQIVEVVDEFGRDAKLDGLLKKYHGSRKNRVLVFVLYKKEAVRVETMLQRKGWKCTAIHGDKGQAQRMEALEAFKSGTIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGISHTFFTNHDKPKAGELVNLLRESNAPVPEELTKFGTHVKKKEHKLYGAFAKNVDMNKKATKITFGDSDDE 539
[Close]
BLAST of mRNA_A-nodosum_M_contig1060.4.2 vs. uniprot
Match: A0A6G0WXV8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXV8_9STRA)

HSP 1 Score: 509 bits (1310), Expect = 8.790e-167
Identity = 271/422 (64.22%), Postives = 319/422 (75.59%), Query Frame = 1 
Query:  823 PLKDFADVDMPPEVMRYVTLQKWKEPTPIQAYCWPVLNAGRDVVGIAETGSGKTLAFSLPAMARIVKRAK-ARRNEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACIYGGVPKWEQKKALGGAGGCCVQVVVATPGRLKDLVGEGACDLSQVTSLVLDEADRMLDLGFEQDVRDIIGCCAKAGERQTAMFSATWPKSIRDLAAEFLTRPVKVNVGDDELTANSRVEQHVEVVEERERDGKLLRLLAKCHGSRNNRVLVFALYKREAARLEQFLQRNSFDAVAVHGDKGQGDRERALGQFKSKECPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTFFHQGDKARAGELVNVLQDANQSVPEALMRFGTHVKKKEHKLYGAFAKDVDMDKKSKKTTFDD 2085
            PL  F +V+ P  +M   T   +  PTPIQA CWP+L +GRD++GIA+TGSGKTLAF++P +  I  + K +++ +GP MLV+APTRELA+Q AEVI+ AGK   + S CIYGGVPK EQKKAL       V VVVATPGRLKDL+ E AC LS VT  VLDEADRMLD GFE+D+R IIG C    ERQ AMFSATWP+SI+ LA EFL  PVKV +G DEL A++ V Q VEVV+E  RDGK+  LL K H SR NRVLVF LYK+EA R+EQ LQR  +   A+HGDK Q  R  AL  FKS + PL++ATDVAARGLDIPDVE+V+NYSFPLTIEDY+HRIGRTGR GKKG SHTFF   DK +AGELVN+L+++N  VPE L +FGTHVKKKEHKLYGAFAKDVDM KK+ K TFDD
Sbjct:  132 PLLTFREVNFPKHMMTSTT--GFAAPTPIQALCWPILTSGRDIIGIAQTGSGKTLAFAIPGLVHIADQMKKSKKLQGPVMLVVAPTRELAIQCAEVISIAGKAANITSICIYGGVPKHEQKKALKQG----VHVVVATPGRLKDLMEEKACSLSGVTYCVLDEADRMLDDGFEKDIRRIIGGCH--AERQIAMFSATWPQSIQTLAHEFLVDPVKVTIGSDELAASANVTQIVEVVDEFSRDGKIDGLLKKYHSSRKNRVLVFVLYKKEAVRVEQMLQRKGWRCTAIHGDKSQEQRMEALEAFKSGKIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGTSHTFFTNFDKPKAGELVNLLRESNAPVPEELTKFGTHVKKKEHKLYGAFAKDVDMTKKATKITFDD 545
[Close]
BLAST of mRNA_A-nodosum_M_contig1060.4.2 vs. uniprot
Match: H3G5S8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5S8_PHYRM)

HSP 1 Score: 501 bits (1291), Expect = 7.900e-166
Identity = 262/426 (61.50%), Postives = 326/426 (76.53%), Query Frame = 1 
Query:  823 PLKDFADVDMPPEVMRYVTLQKWKEPTPIQAYCWPVLNAGRDVVGIAETGSGKTLAFSLPAMARIVKRAKAR-RNEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACIYGGVPKWEQKKALGGAGGCCVQVVVATPGRLKDLVGEGACDLSQVTSLVLDEADRMLDLGFEQDVRDIIGCCAKAGERQTAMFSATWPKSIRDLAAEFLTRPVKVNVGDDELTANSRVEQHVEVVEERERDGKLLRLLAKCHGSRNNRVLVFALYKREAARLEQFLQRNSFDAVAVHGDKGQGDRERALGQFKSKECPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTFFHQGDKARAGELVNVLQDANQSVPEALMRFGTHVKKKEHKLYGAFAKDVDMDKKSKKTTFDDSDDE 2097
            P+  F DV    + M+  + + + +PTPIQ+ CWP+L +GRD++GIAETGSGKTLAFS+P M  I  + +   ++ GP MLV+APTRELA+QS+ VI+EAGK CG++S CIYGGVPK  QKKAL       V VVVATPGRLKDLV E +C+LS+VT +VLDEADRMLD GFE+D+R IIG  +   ERQ AMFSATWP+SI+ LA EFL  PVKV +G DEL A+  V Q VEV+++R RD +   LL K H SR NR+L+F LYK+EA R+E+ L +  ++ +A+HGD+ Q  R  A+ QFKS E PL++ATDVAARGLDIP VEYVINYSFPLTIEDY+HRIGRTGR GKKG +HTFF   DK RAGELVN+L++ NQ VP  L +FGTHVKKKEHK+YGAFAK++D++KK+ K TFD SDDE
Sbjct:    3 PVLSFDDVTFEAKFMK--STKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGMIHIAAQPEVSLKHPGPRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKALRDG----VHVVVATPGRLKDLVEERSCNLSKVTFVVLDEADRMLDEGFEKDIRSIIG--STHPERQIAMFSATWPQSIQKLAHEFLNNPVKVTIGSDELAASVNVTQIVEVIDDRARDARAHALLQKYHSSRKNRILLFVLYKKEADRVERMLHQRGWNCIAIHGDRSQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVEYVINYSFPLTIEDYVHRIGRTGRGGKKGTAHTFFTANDKPRAGELVNLLREGNQEVPTELTKFGTHVKKKEHKMYGAFAKNIDVNKKATKITFD-SDDE 419
[Close]
BLAST of mRNA_A-nodosum_M_contig1060.4.2 vs. uniprot
Match: A0A1V9YSH1_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YSH1_9STRA)

HSP 1 Score: 506 bits (1302), Expect = 9.170e-166
Identity = 268/426 (62.91%), Postives = 322/426 (75.59%), Query Frame = 1 
Query:  823 PLKDFADVDMPPEVMRYVTLQKWKEPTPIQAYCWPVLNAGRDVVGIAETGSGKTLAFSLPAMARIVKRAKAR-RNEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACIYGGVPKWEQKKALGGAGGCCVQVVVATPGRLKDLVGEGACDLSQVTSLVLDEADRMLDLGFEQDVRDIIGCCAKAGERQTAMFSATWPKSIRDLAAEFLTRPVKVNVGDDELTANSRVEQHVEVVEERERDGKLLRLLAKCHGSRNNRVLVFALYKREAARLEQFLQRNSFDAVAVHGDKGQGDRERALGQFKSKECPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTFFHQGDKARAGELVNVLQDANQSVPEALMRFGTHVKKKEHKLYGAFAKDVDMDKKSKKTTFDDSDDE 2097
            P+  FADV+ P  +++  + + + +PTPIQ+ CWP+L +GRD++GIA+TGSGKTLAFS+P +  I  + K   + +GP MLV+APTRELA+Q AEVI+EAGK   + S C+YGGVPK EQK+AL       VQVVVATPGRLKDLV E  C L+ VT  VLDEADRMLD GFE+D+R I+  C    ERQ AMFSATWP+SI+ LA EFL  PVKV +G D+L A+  V Q VEVV+E  RD KL  LL K H SR NRVLVF LYK+EA R+E  L R  +   A+HGDKGQ  R  AL  FK+ + PL++ATDVAARGLDIPDVE+V+NYSFPLTIEDY+HRIGRTGR GKKG SHTFF   DK +AGELVN+L+D+N  VPE L +FGTHVKKKEHKLYGAFAKDVDM+KK+ K TFD SDDE
Sbjct:  117 PILKFADVNFPKAMLK--SCENFTKPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFSVPGLVHITDQLKNNPKKKGPIMLVVAPTRELAVQCAEVISEAGKSVNITSLCLYGGVPKHEQKRALKAG----VQVVVATPGRLKDLVQEKCCSLANVTYTVLDEADRMLDDGFEKDIRLIMSECHV--ERQIAMFSATWPQSIQKLAHEFLVDPVKVTIGSDDLAASENVTQIVEVVDEYGRDSKLDSLLKKYHSSRKNRVLVFVLYKKEAVRVETMLNRKGWKCTAIHGDKGQQQRMEALEAFKTGKVPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGTSHTFFTNHDKPKAGELVNLLRDSNAPVPEELTKFGTHVKKKEHKLYGAFAKDVDMNKKATKITFD-SDDE 533
[Close]
BLAST of mRNA_A-nodosum_M_contig1060.4.2 vs. uniprot
Match: A0A485L977_9STRA (Aste57867_16705 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L977_9STRA)

HSP 1 Score: 504 bits (1298), Expect = 4.740e-165
Identity = 264/422 (62.56%), Postives = 320/422 (75.83%), Query Frame = 1 
Query:  823 PLKDFADVDMPPEVMRYVTLQKWKEPTPIQAYCWPVLNAGRDVVGIAETGSGKTLAFSLPAMARIVKRAKARRNE-GPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACIYGGVPKWEQKKALGGAGGCCVQVVVATPGRLKDLVGEGACDLSQVTSLVLDEADRMLDLGFEQDVRDIIGCCAKAGERQTAMFSATWPKSIRDLAAEFLTRPVKVNVGDDELTANSRVEQHVEVVEERERDGKLLRLLAKCHGSRNNRVLVFALYKREAARLEQFLQRNSFDAVAVHGDKGQGDRERALGQFKSKECPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTFFHQGDKARAGELVNVLQDANQSVPEALMRFGTHVKKKEHKLYGAFAKDVDMDKKSKKTTFDD 2085
            PL  F +V+ P  +M   + + +K PTPIQ+ CWP+L +GRD++GIA+TGSGKTLAF++P +  I  + K  +++ GP ML +APTRELA+Q ++VIA AG   G+ S CIYGGVPK EQKKAL       V V+VATPGRLKDL+ E AC L  VT +VLDEADRMLD GFE+D+R IIG C +  ERQ AMFSATWP+SI+ LA EFLT PVKV +G D+L A++ V Q VEVV+E  RD K+  LL K H SR NRVLVF LYK+EA R+E  LQR  +   A+HGDK Q DR  AL  FKS + PL++ATDVAARGLDIPDVE+V+NYSFPLTIEDY+HRIGRTGR GKKG SHTFF   DK +AGELVN+L+++N  VPE L +FGTHVKKKEHKLYGAFAKD+DM KK+ K TFDD
Sbjct:  128 PLLTFEEVNFPKHMM--TSTKGFKTPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFAIPGLVHIADQLKKDKSKKGPIMLTVAPTRELAIQCSDVIAVAGTAAGISSICIYGGVPKHEQKKALRDG----VHVIVATPGRLKDLMEEKACSLKSVTYVVLDEADRMLDDGFEKDIRLIIGGCHR--ERQIAMFSATWPQSIQKLAHEFLTDPVKVTIGSDDLAASANVTQIVEVVDEFGRDAKIDGLLRKYHASRKNRVLVFVLYKKEAVRVESMLQRKGWACTAIHGDKNQHDRMEALEAFKSGKTPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGTSHTFFTNFDKPKAGELVNLLRESNAPVPEELTKFGTHVKKKEHKLYGAFAKDIDMTKKATKITFDD 541
[Close]
BLAST of mRNA_A-nodosum_M_contig1060.4.2 vs. uniprot
Match: A0A484DY05_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DY05_BRELC)

HSP 1 Score: 503 bits (1296), Expect = 1.410e-164
Identity = 264/426 (61.97%), Postives = 324/426 (76.06%), Query Frame = 1 
Query:  823 PLKDFADVDMPPEVMRYVTLQKWKEPTPIQAYCWPVLNAGRDVVGIAETGSGKTLAFSLPAMARIVKRAKAR-RNEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACIYGGVPKWEQKKALGGAGGCCVQVVVATPGRLKDLVGEGACDLSQVTSLVLDEADRMLDLGFEQDVRDIIGCCAKAGERQTAMFSATWPKSIRDLAAEFLTRPVKVNVGDDELTANSRVEQHVEVVEERERDGKLLRLLAKCHGSRNNRVLVFALYKREAARLEQFLQRNSFDAVAVHGDKGQGDRERALGQFKSKECPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTFFHQGDKARAGELVNVLQDANQSVPEALMRFGTHVKKKEHKLYGAFAKDVDMDKKSKKTTFDDSDDE 2097
            P+  F D+   P+ M+  T + + +PTPIQ+ CWP+L +GRD++GIAETGSGKTLAF++P +  I  ++    ++ GP MLV+APTRELA+QS+ VI+EAGK CG++S CIYGGVPK  QKKAL       V VVVATPGRLKDLV E +C+LS+VT +VLDEADRMLD GFE+D+R II       ERQ AMFSATWP+SI+ LA EFL  PVKV +G DEL A+  V Q VEV+++R RD +   LL K H SR NRVL+F LYK+EA R+E+ L +  +  VA+HGD+ Q  R  A+ QFKS E PL++ATDVAARGLDIPDVEYVINYSFPLTIEDY+HRIGRTGR GKKG +HTFF   DK RAGELVN+L++ NQ VP+ L +FGTHVKKKEHKLYGAFAK++D  KK+ K TFD SDDE
Sbjct:  137 PVLSFKDISFEPKFMK--TTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFAIPGLIHIAAQSGVSPKHPGPLMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKALRDG----VHVVVATPGRLKDLVEEHSCNLSKVTFMVLDEADRMLDEGFEKDIRGIISHTHP--ERQIAMFSATWPQSIQKLAYEFLNDPVKVTIGSDELAASQNVTQIVEVIDDRARDARAHALLQKYHSSRKNRVLLFVLYKKEADRVERMLHQRGWHCVAIHGDRSQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPDVEYVINYSFPLTIEDYVHRIGRTGRGGKKGTAHTFFTANDKPRAGELVNLLREGNQEVPKDLTKFGTHVKKKEHKLYGAFAKNIDSAKKATKITFD-SDDE 553
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1060.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEE8_ECTSI2.670e-25585.55DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835YU16_9STRA1.400e-17769.53DEAD box RNA helicase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S3XUU1_HETAK1.890e-17164.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5D6YE84_9STRA2.180e-16963.44Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
T0RX20_SAPDV7.180e-16762.44Uncharacterized protein n=2 Tax=Saprolegniaceae Ta... [more]
A0A6G0WXV8_9STRA8.790e-16764.22Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
H3G5S8_PHYRM7.900e-16661.50Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A1V9YSH1_9STRA9.170e-16662.91DEAD/DEAH box RNA helicase n=1 Tax=Thraustotheca c... [more]
A0A485L977_9STRA4.740e-16562.56Aste57867_16705 protein n=1 Tax=Aphanomyces stella... [more]
A0A484DY05_BRELC1.410e-16461.97Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1060contigA-nodosum_M_contig1060:151047..162098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEE8
Preferred nameDBP3
PFAMsDEAD,Helicase_C
Model size3008
Max annot lvl2759|Eukaryota
KEGG koko:K07466,ko:K14811
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000166,GO:0000460,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
Exons9
Evalue2.18e-261
EggNOG OGsCOG0513@1|root,KOG0331@2759|Eukaryota
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-00_002030.1
EC3.6.4.13
Descriptionhelicase activity
Cds size1869
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03009,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1060.4.2prot_A-nodosum_M_contig1060.4.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1060 151955..161867 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866446.373006-UTR-A-nodosum_M_contig1060:151046..1519541680866446.373006-UTR-A-nodosum_M_contig1060:151046..151954Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1060 151047..151954 -
1680866446.4834898-UTR-A-nodosum_M_contig1060:161867..1620981680866446.4834898-UTR-A-nodosum_M_contig1060:161867..162098Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1060 161868..162098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866446.3830805-CDS-A-nodosum_M_contig1060:151954..1521041680866446.3830805-CDS-A-nodosum_M_contig1060:151954..152104Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1060 151955..152104 -
1680866446.393409-CDS-A-nodosum_M_contig1060:152983..1530991680866446.393409-CDS-A-nodosum_M_contig1060:152983..153099Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1060 152984..153099 -
1680866446.4066892-CDS-A-nodosum_M_contig1060:153546..1536821680866446.4066892-CDS-A-nodosum_M_contig1060:153546..153682Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1060 153547..153682 -
1680866446.4156299-CDS-A-nodosum_M_contig1060:153847..1539591680866446.4156299-CDS-A-nodosum_M_contig1060:153847..153959Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1060 153848..153959 -
1680866446.4318206-CDS-A-nodosum_M_contig1060:154743..1548651680866446.4318206-CDS-A-nodosum_M_contig1060:154743..154865Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1060 154744..154865 -
1680866446.440404-CDS-A-nodosum_M_contig1060:155413..1555931680866446.440404-CDS-A-nodosum_M_contig1060:155413..155593Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1060 155414..155593 -
1680866446.4485064-CDS-A-nodosum_M_contig1060:156795..1570471680866446.4485064-CDS-A-nodosum_M_contig1060:156795..157047Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1060 156796..157047 -
1680866446.4570358-CDS-A-nodosum_M_contig1060:157414..1579211680866446.4570358-CDS-A-nodosum_M_contig1060:157414..157921Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1060 157415..157921 -
1680866446.4719863-CDS-A-nodosum_M_contig1060:161573..1618671680866446.4719863-CDS-A-nodosum_M_contig1060:161573..161867Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1060 161574..161867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1060.4.2

>prot_A-nodosum_M_contig1060.4.2 ID=prot_A-nodosum_M_contig1060.4.2|Name=mRNA_A-nodosum_M_contig1060.4.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=623bp
MALAEATIAMSKEERKALKKARKKEARKLKEKIERKVSTHPTTDGEETAV
VAEAPSKDIGKKASKKASKKRKVEAVDEADEVDAAGGGSGTPASSAKKEK
VKKSKNKPRPSEPSPPDAADTNGEHPTADPSNGSSNSISSKRPKKTEKDA
IAKKKKNKTKRENASATENPANGPGAGKANAAPGGATKVHVEGMSVTPLK
DFADVDMPPEVMRYVTLQKWKEPTPIQAYCWPVLNAGRDVVGIAETGSGK
TLAFSLPAMARIVKRAKARRNEGPFMLVLAPTRELALQSAEVIAEAGKHC
GVRSACIYGGVPKWEQKKALGGAGGCCVQVVVATPGRLKDLVGEGACDLS
QVTSLVLDEADRMLDLGFEQDVRDIIGCCAKAGERQTAMFSATWPKSIRD
LAAEFLTRPVKVNVGDDELTANSRVEQHVEVVEERERDGKLLRLLAKCHG
SRNNRVLVFALYKREAARLEQFLQRNSFDAVAVHGDKGQGDRERALGQFK
SKECPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKK
GVSHTFFHQGDKARAGELVNVLQDANQSVPEALMRFGTHVKKKEHKLYGA
FAKDVDMDKKSKKTTFDDSDDE*
back to top

mRNA from alignment at A-nodosum_M_contig1060:151047..162098-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1060.4.2 ID=mRNA_A-nodosum_M_contig1060.4.2|Name=mRNA_A-nodosum_M_contig1060.4.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11052bp|location=Sequence derived from alignment at A-nodosum_M_contig1060:151047..162098- (Ascophyllum nodosum dioecious)
GTCCTCGCGTCGCCGATTCATTAGTGCTGGCATTCGGAGGACGCCGCCGA
CCTACGTCAATCGCGGAGTGAACGATCGATCACGCCCCTTCATCTGGCTT
GGTGTACGCCTGTTCCTTGTTGGTGCCACCCATCCACTCAAGGGTGTTCA
GATATCGAAAGAGTGCCACAGCCACCACGTATTGTATAAGCTGTTTTTAG
AGGTTAGCGTACAGACAGTACATCCGATACCATGGCACTCGCGGAGGCTA
CCATCGCCATGAGCAAGGAAGAACGAAAGGCCCTGAAGAAGGCCCGCAAG
AAGGAGGCGCGGAAACTAAAGGAGAAAATAGAGCGGAAAGTATCGACCCA
TCCAACCACTGATGGAGAGGAGACTGCGGTTGTGGCCGAGGCTCCCTCGA
AGGACATCGGCAAGAAAGCTTCAAAGAAGGCCTCCAAAAAACGGAAGGTC
GAGGCTGTTGATGAGGCTGACGAGGTCGATGCAGCTGGCGGAGGATCAGG
TACGCCTGCGTCATCGGCGAAGAAGGTGAGGGGAGAAACCAGATCGGTTG
ATTGACTCCCGAAGCGATGCGAACTGTGTACCCCACTCACTTGCCGCAAC
ATGATTGGCAGCTACAGCTCACTGACTTGAAATATTAGTATTATTAATAG
CAGCACACAACACAATTTCAGGACAGCGGCTCCCCTACAATGATATCACA
CAGCCAGACATATATGTATATTTATTAATTATAAAATTGCACATAAATGC
CGGTCGACCCCGGTAGCCACCTCGTAACCTTCTGAATGATTCGATCCCGG
CAAACGGGATCACAAAATAAAAATGCAGCCAGACATCTATTCGTTATATT
TATTAATCCTTCTCGCGATCAAGGCACGCACCGCAGAAGGAAGGTGGATT
AAAAATTGCACATAACCATTGATGTCCAGAATGGATGGGAAGAAAACACA
ATCCGGCCCTGTTATCCTAATCATTGTATCCCACTCGCATTGATCCTCCC
AAGGGGGGATCAGTGATACTTGCTACGAAAACCTCTGATCAGGCGCGACA
GAGGGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT
ATGTATGTATGTATGTATGTATATTTATTAAATTGCACATAACCGCGCAA
TCCGGCCCTGTCATCCGAGTCATTATATGCCACTCGCATTGATCCACCGA
TCCTCCCAAGGGGGGATCAATGATACTTGTATGTATGTATAGTCATCACA
TATAGCAGAGTATGGATCAACCGGGTAAAGTTGCCAATCCTGCTCGTGGT
CAGCTGAACAGGGAAAATGAACATTCCCCTGTCCCCGTTCGCGCCTGAGA
ATTTGGTCTCGCGAGACGGGTTCAGCCGTCCCGTCCCGCGTCAGCCTGTT
CATTCTCTATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCC
GAGTTCCGCGGCGGCGTCCATTTATTTAAATAAAAACCGCCATACGCCAT
CGGGTCAGTCCCGAGTTGCGAACCGATGGCGTTCACTGCCGAGAGTCCGC
CGGCACAGGGCCAGTAAACCTCAAAGGTAGTATAGGACGAGTGCTGCCTT
GGCAGGTCACCATGGACCAATCAATTAATATGCGCCTCTCTTTCCCACAC
CCACTACTGGTATGAAGGGGTTATATTAAATATTAACAGTCATAGCATGC
TGAAAGGACCCTCTTCAAACTGGAGCTATTATTGTTTATTATCACATTAT
TACGTTATTAATAGAGCTCAAGGATCAAGGATCAATAGGGATCGGAATAT
TCTGTACGTGAAGAAACCCGCTATCGTCAGAGCGGATGGCGCGTTCGTCC
CTCGGAAGCCTCGGCGCCCAGTTGGCCTCCAACGCATCGCTCGCGTGTCT
CGATCCACCCATCAGCACCCGTGTCTAGTGAACCTTTAAAAATAATACCA
TGACTACAACAGTATCATCATTAACAGTATGTGCGTACAAGAAGCATTGC
AGCACCGCTCTCGTAGAACTATATTAGTCTAAATTGTCAGCGAGGGATGT
TTGTACAGATGATAAGTACATCTCCGTCTCACTCACCTGTGACCATCGAG
AGCATCAAGAACATCGAGAACAAATGGGACGTGGAACGTGGGCAGGGTTA
CGCCTGCAGTAGGGCCTTTGCACCAAATCTCGAGAGAGTGCCGGAGAGAC
GACGCGCTTTCAAGCGATATATCTCTTTTGAGATCACCGAGCCTTTCAAC
TTGTGACAGGACATGTAACAACGTGATTGCGAGGTTGTTGTTGTTGTTGT
TGATTTACACATTCAGCGTATTGTCCTTGCAACTGAAGAAACTACGGTGA
CGCAACAAGTCAGCCATAGACCTATCAAATGCCAATCCCGCTTGCGGTCA
CAAAGAGGTACGAAGGTCAACGGGTCACATCATGGTGACAACCCGCTACT
CAGACCAACAGGGGTCCAAATCGCGACAGCAAGTTATGCGGCTCTACAAG
CAATGGCACCGACTAATATCAAAACGGTTTATCAAACCTCCTTACTCCAT
ATCGAGAGCAATCTCGATCGACTCGGAATGTTGTCGCCTACCCACGACCA
GCATTCTCAGCAAAAAACCGGAAAAGTTACGCTCCAACCAGTTTTGATCA
ACAAGTCCAAGTTTCTCACGGCCACACATTGTACAGAAATAAGAAAAATT
GAAATACCGAGGTCCATGGTGGTGGAGGCCTTGAGCTGGTGAGGCCGGCG
CGCGAGCCAGCATCCAGCCGTCCAAACCCCTGTGCATCCTTGAAAAAGCC
CCACGAATCTTGCCCGTTCGCCGCTCCTTGTGGCCCTCGTAGTAAGAAAA
ATGACCGTGGTCAGACATCAGCTTTTCCCTCAGAAACCTCCGGGTTCAAG
CCTGTGATTCTCGCGCATAGGGGTTCAGCCCTCCCCTGGCTCGTCGACGA
TCGAGCCACCCTCCGCCTTCGCCGAATCTGGTGCGTACCCACCCGATAGA
GCACTACCAGGCTCTCCGTGACAGTGCTCCCTGCCTCTCGCGTGCCGCCA
CCTTCCCGAAGGCCCCCAAATTGGGGCTCGGAAGAGGCGCGCACCTGGGA
GCACCATCATCCTCAGCCAACCATACCGCCGCCGCGTCTCAACCGACAGG
CTGAATCGCGAAGGCAGCCAGTTGTCTGCATCTCTTGAGGATGAGCTCGG
CCCTACACCCGCCGGAAAGACCCTCCCACACTCATACCCCGAAACCAGGT
TTTCTACCTCCCAGATTCAGCCTGGGTGTGGACAATCGACGGGCTGACGC
GGGACGGGACGGCCGGCGAACCCGTCTCGCGAGACCAATTTTTCAGGCTC
GAACGGGGCTTTCACTCCCCCCGTCCCGTTCGAGACCACGATACTAAAAT
AATAGTAATAGGGAATGGCAACCTTACCCGATTGGCCCGATTAGTGCCTA
AGCTCCTGAAAGTGATGACCTCACACACACACACACACACACACCTTGGG
AGGATCAATGCGAGTGGCATAGAATGACTAGGATGACAGGGCCGGATTGC
GCGGTTATGTGCAATTTAATAAATACACACACGCACACACACACACAAAG
TAAACCCCGGGTGGGCTACATGCAGTAAAATAGAATGAGTAGACTACGGG
GCCGACTTGCGCGGCTATGTGCAATTTATTAAATGCACATTCAATACGAG
TGACATAGAATGACCAGGATGACAGGGCCCGATTGCGTGGTTATGTGCAA
TTTAAGAAATACACTCAAGACACACACACACTCACCGACACACTTTCTGG
ATAGACAAGACCATACTTTGATGTTGAGCCAGACTCCTGCCGCCGACCCC
TGCGAGGAGACATACCGCAGTTTCCCGTCTTACGGGTGTTCGCCCTCCGT
CCATGATAGGCCAGACGATTACTTTGGTCGTGCACACTCTATATACTATA
TACTGTATCTATCTGGTCCAGTGTTGCGTAGACCTCCCTTCCTCTTCCTA
TTTTCATTGCAATCGGTAACGGCTTTCGCGGTATTCGGTATTTCGCGGTA
TTCTGGTCCCAACTTGTGGATTGCGCGTGCTACTACTGTCTGTGCTACTG
CTACTGTTGTCTGTTGTCTGTTGCACCGCGGCATTCCAACCCATAGCCCC
TCAACCCTGTCCAACAAAAAAAAAAAGGAGAAGGTCAAGAAGTCGAAGAA
CAAGCCCCGACCGTCGGAGCCATCCCCACCCGACGCCGCAGACACCAATG
GCGAACACCCGACGGCCGACCCCAGCAACGGCAGCAGCAACAGCATCAGT
AGCAAGAGGCCAAAGAAAACGGAAAAAGATGCGATTGCGAAAAAGAAGAA
AAACAAAACTAAGAGGGAGAACGCCTCCGCAACCGAAAACCCCGCCAATG
GCCCGGGCGCAGGAAAGGCAAACGCGGCTCCCGGGGGGGCGACCAAGGTT
CACGTCGAAGGGATGAGCGTGACGCCCTTGAAAGACTTCGCCGACGTGGA
CATGCCTCCCGAGGTGATGCGATACGTGACCCTTCAGAAGTGGAAGGAGC
CGACGCCAATCCAAGCTTACTGCTGGCCAGTGCTCAACGCCGGGCGCGAC
GTGGTCGGCATCGCGGAGACGGGATCCGGGAAGACCCTCGCCTTTAGCCT
TCCCGCCATGGCGCGCATCGTCAAGCGCGCGAAGGTGATGCCATAAGGAG
GACGTTGTGGATAAGGATCCGTCATACGATGGCGGCGGAACGTTACGATT
ACGATCGGTGAACTTCTTTTTTTTCCCGCAGGAACGAGTGGAGTATGAAG
GTCTTCCACGGCCCGTCAGAACCAGACTCGCGCGTTTATTTCAGGCCGAC
GCGGCTAGGAAGCGGCTTTTGCTAAACTTCTGCTTTCATCCCGTTCGTTT
CCCCCTCGGTGCGTGATTCGAGAGTGTCTTGTGTGAGATAATGGATGCTA
TGAACGCACGTCCTTCGAAGTGGAGAGGCGAAGAGGTCGGCCCAACACCG
CATTACCTCCTCCCGCGTCTCAATTCCCTCCCCATCTGAAAATCCTACCA
GGCACGGAGAAACGAAGGGCCGTTCATGCTGGTGCTTGCTCCCACGCGAG
AGCTCGCGCTGCAGAGCGCCGAGGTGATCGCGGAGGCCGGCAAGCACTGC
GGCGTGCGGAGCGCGTGTATATACGGAGGCGTTCCGAAGTGGGAGCAGAA
GAAGGCGCTCGGGGGGGCAGGGGGGTGCTGCGTGCAGGTCGTGGTGGCGA
CCCCCGGTCGACTGAAGGATCTTGTTGGAGAGGGGGCGTGCGACCTCTCG
CAGGTGGGTGTTGCTTCGTCGAGGTCACCGCACACTTTTTTTTCTTTTCT
TTGAAAAGGGGGTCTGTGAAATGTCGCTGAACCAGCGGTGGAGGGCAGCT
GGAGTGACGTAGTGATGTGATGTGATGTGATGTGATGTGGTTGAAGGAGC
AAGAGTGAGGACACAGGATGTGCATTGATGTGCATTTATTTATCTATCTA
TCTCGTACCGGTAGACGTTTTTCCTTTTCTATAAAGCTTTGCAACTTACA
AGAACCTCACGAAACACACCGAAAGGTTCCAGTGGGCATATTACTATTAC
TATTACTAGTATTTAGCTCAAAGAACATTTTTCTTTAAACACCACATTGA
TGATTACGATGTTTAAAAAAAAAATCTTGCTTCCTCGACTCGACACGGGT
GTTTTACATGGGTGTTTTACATGGGTGTTTTACATGGGTGTTTTCATGGG
TGTTTTACATGGGTGTTTTACATGGGTGCTTTACATGGGTGTTTTACATG
GGCGTTTTACATGGGCGTTTTACATGGGTGTTTTACATGGGTGTTTTACA
TGGGTGTTTTACATGGGTGTTTTTCATGGGTGTTTTTCATGGGTGTTTTT
CATGGGTTTTTACATGGGTGTTTTTTTTACATGGGTGTTTTTACATGGGT
GTTTTACATGGGTGTTTTCATGGGTGTTTTTCATGGGTGTTTTACATGGG
CGTTTTTCATGGGTGTTTCACATGGGTGTTTTTCATGGGTGTTTTTCATG
GATGTTTTATACTGGAGTAAGGGTGTTTTAGTGTGTCCAAAAGAGGGGGG
AGGGGACGCCAATCGGATGCGTTGTTATTGACTTCCCGATGTCAAATTAC
GTGCCAGTACTGTAGAGGACATATTGGCGAAGGTGCTCCGCGTGATGATA
CGTGCGACCGAGCGATCGTAACGTGTCATTGCTGTGGATATTTACGTCCT
GATCTCCCCCCCCCCTGATCACGCACGCATACAAACATACATACATACAT
ACATACATACACCAAATGTCGTTCTCCGCTCTTCTGTGTTGTTCCCTCTA
CATACATACACGGGAGAAGAGAGCAGCCTTACCCAAGACACGGAGCCGTT
TATTACCTCGCCACCTCAGCAGCTCTCTTTCTCTCTCTCTATATATATAT
GTACATATACCCTTGAACGTGGTGCTTGCAACGAACGAACGAACGAACGA
ACCAGGTGACGTCATTGGTTCTCGACGAGGCGGACCGTATGTTGGACCTG
GGCTTCGAGCAGGACGTGCGCGACATCATCGGGTGCTGCGCCAAGGCGGG
GGAACGACAGACGGCAATGTTCTCGGCCACGTGGCCCAAGTCCATCCGCG
ATCTCGCCGCAGAGTTTCTCACCAGACCGGTCAAGGTACGAGGGGAGGGG
CCTCAGCGATCATCTCACCAGATCATCTCATCAGATCAAACAGGTTTTGG
GAGGAGCGATTTCCCAGCCCTTCCCGCGGGAACATGTTGTCGATGTCTCT
AGTTACTAGTAATACTATGTTCCCAAGCATGCAGTATAGCTCTAGGCTAC
TGCTCTGTTGGAGGGTAGCTGGCTGCCTTTGAGCTGGCTACCTACACGCG
CAGGACGTGTCGTTGCTCGTAAAATATCGGGAGGGCTCGCCGGAGCTGTG
AGATATGAGATGTGCTATTTTTTTGCGTCGCAGGGTGTGAAATGTGCACA
TAGGAGGTACCTGGTAGGAGGTAGGTCACACGAGAGGCCGCGATGACTTT
TTTGGCTTGGCGAATCGCGCTTCTGGGAGATACTGTTGATCATTCCAAGT
ACAGGTAGAATACTGGTCTTCTCATTTTATTTTATTTTATTTTTCTTCTC
AGAAGGATGCCTACTTAGCCGATTCTCTCTCCATGTTGGCGTGATGACAC
AAAATGAGGCGATGTAAACGTTGTGTGGCGCAGGTTAACGTCGGCGACGA
TGAGTTGACGGCCAACTCTCGCGTGGAGCAGCATGTTGAGGTGGTGGAGG
AGCGGGAGCGAGACGGAAAACTCCTGCGGCTGCTGGCCAAGTGTCACGGG
AGCAGGTGTCAGAAAGGGGCGGCGGCGGGGGGGTGGGGGGGGTAGTCGAG
TTACCATTACTGATGCTTCTTTTGGCACTAATAATACTATTGGTACTAAT
ACTATTGGTACTAATAATACTATTGGCACTAATACTATTGGTACTTTTAA
TGCTATTGGTACTATTACTAATGCTATTGGTACTATTACTAATGCTATTG
GTACGATTAAGTAATAGCGATGCGAGAGTGGTGGTAATGGCGATGTTTTC
GCGGTTACAGGTGAAGTCATTGAGTGTCAAGTGTAAAGTGGTATTAAAGT
ACACTTGTTGGTCTGCACTAAGAATTCATAATGATCTGGCACTCGCTTCC
ATAGTGCTTGCCTCTTTTATCTGGTATGTGTAGCGGTGTTGCCACGAATC
GATTCTGACTCGAGGCGATGTTGCGGTCAAGCGTAGGGTTTTTCCTACGT
TAATTTGATGTAAGAATACGAATACGTCGATTGGATTTCAAAATGGCAGA
CAAATTATAAGTGAGACCAGGTTTATTGATGCACATCACGGTTGGCGTAG
ACATGGTGAGCGTTTCCCCTCTTCTTGTCACTTGCTTTCCTTCCCCAACC
CCCGACGTCCCTTGCCCTCTATCTTTCTATAGCAAACCCTTGGCCTATGC
ACCCAGTGAGTTGTGTCGTTCAGTTATTTTGCTCCTTTTCTTTGGTGGCT
TCTTCTACCCCCCCCCCTCCCCCGCCCTCCCCCAACTCAATCGTATTCAT
CCGCTGCTCCCTTCCCGCCTCACCCCGCGACAACCCCAGAAATAATCGGG
TGCTAGTGTTCGCCCTCTATAAGCGAGAAGCCGCGCGCCTGGAGCAGTTC
CTCCAGCGAAATAGCTTCGACGCGGTCGCGGTGCACGGGGACAAAGGACA
GGTAGAAAACAAAGGTGGAGCTAGAGGGGGGGGGGTTGTGACTTGACCTT
TTAGGCTGGGAACCCTCGATCGATTTTCATCTTCTCGGTCTTACCTTTTT
CTTTTCAGGAAGTTCCTAAGTTTTTTTTTTTTTTTTACTTTTGTGTTTGT
GTGAATACGGTCACAGGGAGACCGCGAGCGAGCGCTGGGGCAGTTCAAGT
CCAAGGAGTGCCCTCTTATGGTGGCCACGGACGTTGCGGCACGAGGACTT
GATATCCCCGACGTGGAGTACGTTATCAACTACTCCTTCCCGCTGACCAT
CGGTAAGCCTTGGAAGAAAAACGCCGGGCTGGTAGAAAGTGTCTTATTTG
TAAGGCGTGCATCCCTGGGTGTGCTTCGTGGGAGGAAGGTGAAAAGCACC
GGATGCGATTCTAGTCAACCCGACGATGTCGAACAATGAATGAATCGATC
GAATAACGGATCTGACAATCTTCTCTCGCACGACCGCGAGGAAAACCCCC
AAAGAAAGACCCAACTATCTAGAGCTATATAATATACTCAAGTACGAGTG
AAATTTATATTTCCGAGTAGAACGCGCCGACGTGTAACAAACTTTCGTGG
AAGGTTTTATCGAGACTCATTCCTCGTGGCGTCCGCTTCCCTACCCCGTG
CCCCCGACGCTCCAAATTTCTCTCCCCCCCCCCCCCCACTTCCTCTCCCC
TCCCCTCCCCCGTCTTTCAACCTGTCGCTTTTTACAAAACCCTTTGTAGA
GGACTACATTCACCGGATAGGACGGACAGGTCGAGCGGGAAAGAAGGGCG
TTTCTCACACGTTCTTCCACCAAGGCGACAAGGCCAGAGCGGGGGAGCTC
GTGAACGTTCTACAGGTACTGTTTTTTTCCTGTCGAAAACGGTGCCGCCA
CCCCGTCATGTATGCATGTTCGCCACCCGGTCACTTTTAGCAGACTGCAG
ACTGGCCACTGGCCATCAACGGCGTGATTATGATATGCCGATCCTGCTCA
CAGGGAAAATTACTTTTCCCTTGTCCACGCTCGCGCCTCCTGAAAAAAGA
AGAAGAAAAAAAAGAGAAAAAGAGAAGCTCTCGGTGTGCCAGAATTTTTC
CCCTTCGAGGGGTTGCCGCCAACTTTTAAGCTCCATGTTTTTTTTTGGAA
GCTATTTTGGGAGCGTAGTCCCATCTCTTGTTCGCGATCCCTCATTTACA
GTGCACGTCGTATCCACTCCCACCGGTACGTTTTTGGTTGTTATAGTGCA
CGTCGGGTTGTTTTTGGTCTGTTTTTCAGCGTCGGCTGTTCCAAGAAAAA
ACGTCCGTCTCGCTCGCCTCCGAAACGCTTTCGAGCCCGCCACGAAGACT
CACCCTTGTACGTGACGCGCGGTACGCGACGCCGTTCTAACACCTCCCCC
CCCTCCCCCTCCCCAAACCTCCCGCCTTGCCCCTCGTGGCACCGCCTTGG
AACATCTACATCTACATCTACTGCCGTTCCATGTTTGGTTTGGACTCTAC
GATAGTTTCCCACCATGTTTTTTTCGAGGCAACAAACGCCACCATCCAGT
CAGCCCCATACTCACACCTCGCGGCCACGATCCTTGATAGCATCCTTGAT
AACATCCTTGATAGCATCCTTGATAACATCCTTGATAACATCTTTGACGA
CATCCTTGATAGCATCCTTGATAACATCCTTGATAACATACCCTTGATAA
CATGTCTTGTGGCGTGATGATGCCGGTGCCTGACCGCGCTCCAGGACGCC
AATCAGTCGGTGCCCGAAGCGCTGATGCGATTCGGCACGCACGTGAAGAA
GAAGGAGCACAAGCTGTACGGGGCCTTCGCCAAGGACGTGGACATGGACA
AAAAATCCAAGAAAACCACGTTCGATGATTCCGACGACGAGTAGACAGAG
GAGCAGAGAGGAGAGGAGACGAGGAGAGGAGGGCCCTTGGAAGGAAGTGG
GTGCCAGACGGAGCGAAGTACTCGGCGCAATCGGACGATGGTGGGCGTGC
AGGCTCACGGCGGGCACAGTGTCTGCTGCTGCCGGAGAGAACACGCGTAA
TACGCGGCGGCGGGGTAGTGTTTCGGCGGGGCGTGCAAGTGGGAGCTTTC
TTCGCGTTTGAATGATTTTTTAGGGGCCCGGGAGACGACCGGTTTGCAGT
GGGTCAGCTGTGAAGCGCGAATCATCTTTGCCCCGCCGGGAGCTCGGGTG
AAGGATTACCAGCCCATTGGCTCTCTCCCTCTCTTTTTCGTCCTGTTGCT
GACGAATTAAATCAGACAGATCGACTGCGGATTGCATAGGGGTATTATTC
AAAGTTGAAACCGTTCCAAGCATAGCAAGCGGCAGACTGGCCGCTGACTG
TGGCCCGTTGAACTGGACATACACGAGATTTGACGCACGCGGTGGCAGCA
CACTTGGCAGCACACTTGTAAGCGCCGTTGATGATTGGGTGGGGGTGGGG
GGTTCGGATACGCGTCTCTGTGTTTTGTTTATTAATAGCATGGGCGTGGG
ATGTTGCCCGCACCGTCTGCGGCCTTGCGTAGGCGCCCGAATGGAGTCGT
CGAAGCGAACCCTGTCTGGAAGTACTCACCCGGGGTAGCCTATCCACCTT
TTGTTTTAAAGACAAGAGACTGTTAATATGACTATGACACCGAGCTTCCA
CGAGTGCACGCCTGAAGCATTAACAAGGGTTCACGCACAGGCACCCACGT
AATAATAGCCTACCAAAGCAGGAGCAGCACGTGTAAACTTTGCCACCGAT
ACAGGTTTTGACTGTAAACATCACCCGATAAAAGTTTTCTCTTTAACTCG
AT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1060:151047..162098-

>mRNA_A-nodosum_M_contig1060.4.2 ID=mRNA_A-nodosum_M_contig1060.4.2|Name=mRNA_A-nodosum_M_contig1060.4.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1869bp|location=Sequence derived from alignment at A-nodosum_M_contig1060:151047..162098- (Ascophyllum nodosum dioecious)
ATGGCACTCGCGGAGGCTACCATCGCCATGAGCAAGGAAGAACGAAAGGC
CCTGAAGAAGGCCCGCAAGAAGGAGGCGCGGAAACTAAAGGAGAAAATAG
AGCGGAAAGTATCGACCCATCCAACCACTGATGGAGAGGAGACTGCGGTT
GTGGCCGAGGCTCCCTCGAAGGACATCGGCAAGAAAGCTTCAAAGAAGGC
CTCCAAAAAACGGAAGGTCGAGGCTGTTGATGAGGCTGACGAGGTCGATG
CAGCTGGCGGAGGATCAGGTACGCCTGCGTCATCGGCGAAGAAGGAGAAG
GTCAAGAAGTCGAAGAACAAGCCCCGACCGTCGGAGCCATCCCCACCCGA
CGCCGCAGACACCAATGGCGAACACCCGACGGCCGACCCCAGCAACGGCA
GCAGCAACAGCATCAGTAGCAAGAGGCCAAAGAAAACGGAAAAAGATGCG
ATTGCGAAAAAGAAGAAAAACAAAACTAAGAGGGAGAACGCCTCCGCAAC
CGAAAACCCCGCCAATGGCCCGGGCGCAGGAAAGGCAAACGCGGCTCCCG
GGGGGGCGACCAAGGTTCACGTCGAAGGGATGAGCGTGACGCCCTTGAAA
GACTTCGCCGACGTGGACATGCCTCCCGAGGTGATGCGATACGTGACCCT
TCAGAAGTGGAAGGAGCCGACGCCAATCCAAGCTTACTGCTGGCCAGTGC
TCAACGCCGGGCGCGACGTGGTCGGCATCGCGGAGACGGGATCCGGGAAG
ACCCTCGCCTTTAGCCTTCCCGCCATGGCGCGCATCGTCAAGCGCGCGAA
GGCACGGAGAAACGAAGGGCCGTTCATGCTGGTGCTTGCTCCCACGCGAG
AGCTCGCGCTGCAGAGCGCCGAGGTGATCGCGGAGGCCGGCAAGCACTGC
GGCGTGCGGAGCGCGTGTATATACGGAGGCGTTCCGAAGTGGGAGCAGAA
GAAGGCGCTCGGGGGGGCAGGGGGGTGCTGCGTGCAGGTCGTGGTGGCGA
CCCCCGGTCGACTGAAGGATCTTGTTGGAGAGGGGGCGTGCGACCTCTCG
CAGGTGACGTCATTGGTTCTCGACGAGGCGGACCGTATGTTGGACCTGGG
CTTCGAGCAGGACGTGCGCGACATCATCGGGTGCTGCGCCAAGGCGGGGG
AACGACAGACGGCAATGTTCTCGGCCACGTGGCCCAAGTCCATCCGCGAT
CTCGCCGCAGAGTTTCTCACCAGACCGGTCAAGGTTAACGTCGGCGACGA
TGAGTTGACGGCCAACTCTCGCGTGGAGCAGCATGTTGAGGTGGTGGAGG
AGCGGGAGCGAGACGGAAAACTCCTGCGGCTGCTGGCCAAGTGTCACGGG
AGCAGAAATAATCGGGTGCTAGTGTTCGCCCTCTATAAGCGAGAAGCCGC
GCGCCTGGAGCAGTTCCTCCAGCGAAATAGCTTCGACGCGGTCGCGGTGC
ACGGGGACAAAGGACAGGGAGACCGCGAGCGAGCGCTGGGGCAGTTCAAG
TCCAAGGAGTGCCCTCTTATGGTGGCCACGGACGTTGCGGCACGAGGACT
TGATATCCCCGACGTGGAGTACGTTATCAACTACTCCTTCCCGCTGACCA
TCGAGGACTACATTCACCGGATAGGACGGACAGGTCGAGCGGGAAAGAAG
GGCGTTTCTCACACGTTCTTCCACCAAGGCGACAAGGCCAGAGCGGGGGA
GCTCGTGAACGTTCTACAGGACGCCAATCAGTCGGTGCCCGAAGCGCTGA
TGCGATTCGGCACGCACGTGAAGAAGAAGGAGCACAAGCTGTACGGGGCC
TTCGCCAAGGACGTGGACATGGACAAAAAATCCAAGAAAACCACGTTCGA
TGATTCCGACGACGAGTAG
back to top