mRNA_A-nodosum_M_contig106.5.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig106.5.2 vs. uniprot
Match: A0A4D6M576_VIGUN (Uncharacterized protein n=3 Tax=Magnoliopsida TaxID=3398 RepID=A0A4D6M576_VIGUN) HSP 1 Score: 166 bits (419), Expect = 2.990e-45 Identity = 128/323 (39.63%), Postives = 153/323 (47.37%), Query Frame = 1
Query: 1 ITSFHGVTGSVYKTREGIHRCIADQRLLATPSS*TRVAAFNPNLEQVQRLAYLHKFVSFGLAQCSPF-----------------------------IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKLTKPPTNALHPVIPDNTCILRITATGGTDLADAYSSSNVRTSSLAKE----------VDNPVGFLPSRGIALSDFRPLQKIPHCLLPWEPGPCLSSNASFFFRRITSFVITNDMRHEQSLFPAKGKFSRVTHPSATKVKNFYTTRMCKAYRQRSS 834
+ S H VTG VYK RE IHR +AD+RLLA P+S R P + L A CS +AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+L +AL P+IPDN CIL +TA GT+LADAYS V SS KE D+P+G P+ L P Q P S+A ++S P KG+F RVTHPSAT T MCKA RQRSS
Sbjct: 71 MASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRHVC-RPGHKGHDDLTSSSPSSGLSPAVCSGHAPPVSAFPKAPLSFKRIRGMSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQL-----DALRPIIPDNACILCLTAAAGTELADAYSPDTVIASSPGKEESGPCLSPSVADHPLG--PATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCS-----------PPKGRFLRVTHPSATGNTTSRPTCMCKACRQRSS 374
BLAST of mRNA_A-nodosum_M_contig106.5.2 vs. uniprot
Match: A0A2P5W7G6_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5W7G6_GOSBA) HSP 1 Score: 146 bits (369), Expect = 1.670e-37 Identity = 101/240 (42.08%), Postives = 121/240 (50.42%), Query Frame = 1
Query: 1 ITSFHGVTGSVYKTREGIHRCIADQRLLATPSS*TRVAAFNPNLEQVQRLAYLHKFVSFGLAQCSPF-----------------------------IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKLTKPPTNALHPVIPDNTCILRITATGGTDLADAYSSSNVRTSSLAKEVDNPVGFLPSRGIALSDFRPLQKIP 615
+ S H VTG VYK RE IHR +AD+RLLA P+S R P + L A CS +AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+L +AL P+IPDN CIL IT GT+LADAYS V SS KEV +P+ F + F K P
Sbjct: 59 MASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRHVC-RPGHKGHDDLTSSSPSSGLSPAVCSGHAPPVSAFPKAPLSFKRIRGMSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQL-----DALRPIIPDNACILCITTAAGTELADAYSPDTVIASSPGKEVHDPLAFYLYAALLRQAFAHCGKFP 292
BLAST of mRNA_A-nodosum_M_contig106.5.2 vs. uniprot
Match: A0A078I637_BRANA (BnaCnng13060D protein n=2 Tax=Brassica napus TaxID=3708 RepID=A0A078I637_BRANA) HSP 1 Score: 141 bits (355), Expect = 2.900e-37 Identity = 97/219 (44.29%), Postives = 115/219 (52.51%), Query Frame = 1
Query: 202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKLTKPPTNALHPVIPDNTCILRITATGGTDLADAYSSSNVRTSSLAKE----------VDNPVGFLPSRGIALSDFRPLQKIPHCLLPWEPGPCLSSNASFFFRRITSFVITNDMRHEQSLFPAKGKFSRVTHPSATKVKNFYTTRMC 810
+AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+LKL +AL P+IPDN CIL ITA GT+LADAYS V SSL KE D+P+G P+ L P Q P S+A ++S P KG+F RVTHPSAT T MC
Sbjct: 36 LATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLKL-----DALRPIIPDNACILCITAAAGTELADAYSPDTVIASSLGKEESGPCLSPSVADHPLG--PATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCS-----------PPKGRFLRVTHPSATGNTTSRPTCMC 236
BLAST of mRNA_A-nodosum_M_contig106.5.2 vs. uniprot
Match: A0A2N9I7M3_FAGSY (Uncharacterized protein n=4 Tax=rosids TaxID=71275 RepID=A0A2N9I7M3_FAGSY) HSP 1 Score: 139 bits (350), Expect = 8.330e-37 Identity = 97/214 (45.33%), Postives = 117/214 (54.67%), Query Frame = 1
Query: 202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKLTKPPTNALHPVIPDNTCILRITATGGTDLADAYSSSNVRTSSLAKEVDNPVGFLPS-----RGIALSDFRPLQKIPHCLLPWEPGPCLSSNASFFFRRITSFVITNDMRHEQSLFPAKGKFSRVTHPSATKVKNFYTTRMC 810
+AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+L +AL P+IPDN CIL ITA GT+LADAYS V SS KE P PS G A +D R + +PH L P +++SF + P KG+F RVTHPSAT T MC
Sbjct: 11 LATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQL-----DALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEESGPC-LSPSVADHPLGPATTDHRLGKLLPHQLANQTRAPP-QADSSFCSSAYGVLAAVSSC-----CSPPKGRFLRVTHPSATGNTTSRPTCMC 212
BLAST of mRNA_A-nodosum_M_contig106.5.2 vs. uniprot
Match: A0A6A5L6K8_LUPAL (Uncharacterized protein (Fragment) n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L6K8_LUPAL) HSP 1 Score: 137 bits (346), Expect = 2.580e-35 Identity = 113/287 (39.37%), Postives = 137/287 (47.74%), Query Frame = 1
Query: 1 ITSFHGVTGSVYKTREGIHRCIADQRLLATPSS*TRVAAFNPNLEQVQRLAYL-----HKFVSFGLAQCSPFIATIM------HGSIHTTSSIHRLQLGLLGYIIPFSTLAFG-SYKVPSPSVVLPISKHFTAPLQIPFTPTILKLTKPPTNALHPVIPDNTCILRITATGGTDLADAYSSSNVRTSSLAKEVDNPVGFLPSRGIALSDFRPLQKIPHCLLPWEPGPCLSSNA------SFFFRRITSFVITNDMRHEQSLFPAKGKFSRVTHPSATKVKNFYTTRM 807
I HGVTG VYK RE IHR IAD RLLA P S R +P ++ L H F+S + C + + H + G P +L+F S KVPS V LPIS HFTAPL+IPFT TILK T +AL P+IPDNT I +TA GT LADAYSS+NVR+SSL KE E GPCLSS+ S RR+ + I + + KFSRVTHP ATK NF++ R+
Sbjct: 30 ILGSHGVTGGVYKARERIHRSIADLRLLAIPPSCRRHVC-SPGRKRHDDLTSSSPSSDHAFLSKHFSSCQSLVRFFVLHRIKPHAPPLVRAPYPWFTAKTTGVSNPVCSLSFRLSVKVPSLLVFLPISTHFTAPLEIPFTSTILKKTSIFCDALRPIIPDNTRIPCLTAAAGTGLADAYSSNNVRSSSLRKE-------------------------------ESGPCLSSSVADHPLKSATDRRLANISIGYPL--------PRSKFSRVTHPFATK--NFFSVRL 274
BLAST of mRNA_A-nodosum_M_contig106.5.2 vs. uniprot
Match: A0A2N9FRF2_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FRF2_FAGSY) HSP 1 Score: 137 bits (346), Expect = 6.750e-33 Identity = 95/219 (43.38%), Postives = 115/219 (52.51%), Query Frame = 1
Query: 202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKLTKPPTNALHPVIPDNTCILRITATGGTDLADAYSSSNVRTSSLAKE----------VDNPVGFLPSRGIALSDFRPLQKIPHCLLPWEPGPCLSSNASFFFRRITSFVITNDMRHEQSLFPAKGKFSRVTHPSATKVKNFYTTRMC 810
+AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+L +AL P+IPDN CIL ITA GT+LADAYS V SS KE D+P+G P+ L P Q P + S+A ++S P KG+F RVTHPSAT T MC
Sbjct: 890 LATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQL-----DALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEESGPCLSPSVADHPLG--PATDHRLGKLLPHQLANQTRAPPQADSSFCSSAYGVLAAVSSCCS-----------PPKGRFLRVTHPSATGNTTSRPTCMC 1090
BLAST of mRNA_A-nodosum_M_contig106.5.2 vs. uniprot
Match: A0A5N6MM73_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MM73_9ASTR) HSP 1 Score: 127 bits (320), Expect = 2.370e-32 Identity = 75/144 (52.08%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKLTKPPTNALHPVIPDNTCILRITATGGTDLADAYSSSNVRTSSLAKEVDNPVGFLPSRGIALSDFRPLQKIP 615
+AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+L +AL P+IPDN CIL ITA GT+LADAYS V SS KEV +P F + F K P
Sbjct: 51 LATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQL-----DALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFP 189
BLAST of mRNA_A-nodosum_M_contig106.5.2 vs. uniprot
Match: A0A162A9Q8_DAUCS (Uncharacterized protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162A9Q8_DAUCS) HSP 1 Score: 130 bits (326), Expect = 4.140e-32 Identity = 76/144 (52.78%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKLTKPPTNALHPVIPDNTCILRITATGGTDLADAYSSSNVRTSSLAKEVDNPVGFLPSRGIALSDFRPLQKIP 615
+AT +HGSI T SIHRL+LGLLGY+IPF+TLAF S +V SP V PIS HFTAP +IP PT+L+L +AL P+IPDN CIL ITA GT+LADAYS V SS KEV +P F + F K P
Sbjct: 105 LATALHGSIRTAPSIHRLRLGLLGYLIPFATLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQL-----DALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFP 243
BLAST of mRNA_A-nodosum_M_contig106.5.2 vs. uniprot
Match: A0A8J5I8X4_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5I8X4_ZINOF) HSP 1 Score: 126 bits (316), Expect = 4.430e-32 Identity = 74/144 (51.39%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKLTKPPTNALHPVIPDNTCILRITATGGTDLADAYSSSNVRTSSLAKEVDNPVGFLPSRGIALSDFRPLQKIP 615
+AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+L +AL P+IPDN CIL + A GT+LADAYSS V SS KEV +P F + F K P
Sbjct: 11 LATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQL-----DALRPIIPDNACILCLPAAAGTELADAYSSDTVIASSPRKEVHDPWAFYLHAALLRQAFAHCGKFP 149
BLAST of mRNA_A-nodosum_M_contig106.5.2 vs. uniprot
Match: A0A5N6Q1L2_9ASTR (mRNA cap-binding protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q1L2_9ASTR) HSP 1 Score: 131 bits (330), Expect = 1.220e-31 Identity = 76/144 (52.78%), Postives = 91/144 (63.19%), Query Frame = 1
Query: 202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKLTKPPTNALHPVIPDNTCILRITATGGTDLADAYSSSNVRTSSLAKEVDNPVGFLPSRGIALSDFRPLQKIP 615
+AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+L +ALHP+IPDN CIL ITA GT+LADAYS V SS KEV +P F + F +K P
Sbjct: 235 LATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCQPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQL-----DALHPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEVHDPWAFYLHAALFRQAFAHCKKFP 373 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig106.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig106.5.2 >prot_A-nodosum_M_contig106.5.2 ID=prot_A-nodosum_M_contig106.5.2|Name=mRNA_A-nodosum_M_contig106.5.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp MLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDback to top mRNA from alignment at A-nodosum_M_contig106:231882..233195+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig106.5.2 ID=mRNA_A-nodosum_M_contig106.5.2|Name=mRNA_A-nodosum_M_contig106.5.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1314bp|location=Sequence derived from alignment at A-nodosum_M_contig106:231882..233195+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig106:231882..233195+ >mRNA_A-nodosum_M_contig106.5.2 ID=mRNA_A-nodosum_M_contig106.5.2|Name=mRNA_A-nodosum_M_contig106.5.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig106:231882..233195+ (Ascophyllum nodosum dioecious)back to top |