mRNA_A-nodosum_M_contig106.23.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 242 bits (618), Expect = 2.380e-69 Identity = 144/289 (49.83%), Postives = 193/289 (66.78%), Query Frame = 3
Query: 3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRD-DNNSWT----FDA-LGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTLPFLFKGQPAEQNKRYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSSMYNVGQASKWLSHFKTSAE-----LTGASLALNYVMLCFWCAL 836
WN D L L ++ GG VR AD ++WGRALYALSAPL+FSR+LFF Q+L+F GPMIQV+FSM L++F VV++VVM+GFAM+ + L D D T F A LG+V F F + +Y +V L +YLV+I +MLLNLLIAVLST H+KV+ KAD+EFKVS+ARIIEHYR+ V +LP PFNL QL+L+LP + + + Q T+A EAVG+++FWL L P A G +LWV SS++ W +HF + A+ L+ SL + Y+++ FWC L
Sbjct: 871 WNILDLLGLGLVTGGLIVRCADGDNSWGRALYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDTFGGTCLTLFKAMLGEVDFFGSFPGN---QYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMVRDRSG-QGTASTRAQEAVGRMAFWLALGPVAAACGTVLWVLSSLF---APFVWHTHFYSKAQARRGALSVGSLLVRYLIVFFWCVL 1152
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI) HSP 1 Score: 201 bits (510), Expect = 7.750e-55 Identity = 134/296 (45.27%), Postives = 169/296 (57.09%), Query Frame = 3
Query: 3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRD-----DNNSWTFDA-LGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTL-------PFLF----KGQPAEQNK--------------------RYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSSMYNVGQASKWLSHFKTSAE 779
WN DAL ++ L G +R D STWG A YALSAPLV +R+LFF QILQFQGPM+QV+F M LLQF V+LVVM+GF MAL+ + RD D F A LG+ G F EF + RY V +L+ VYL I+T+MLLNLLIA+LST+H +V FKVS+ARII HYR V ++LPAPFNL QL+L+L P+ F K + +E + R+ A A GQ+ +WLVL P AGG +LW S + A W S T+ E
Sbjct: 809 WNVLDALGMLFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQFQGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVEDFGDTLLGLFKAMLGETGFFDEF---SGGRYDPVATILVVVYLFIVTVMLLNLLIAILSTEHAQVQENTGGAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLLLSLGVIAMTFPYCFLLEAKREQSETERPAIDEHGRLFWGNVWEGARQRHRGARRAFGQLVWWLVLGPVAVAGGAILWGLSGFFYAQYA--WHSWLSTTDE 1099
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE) HSP 1 Score: 198 bits (503), Expect = 6.880e-54 Identity = 133/290 (45.86%), Postives = 165/290 (56.90%), Query Frame = 3
Query: 3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRD-----DNNSWTFDA-LGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQL-------VLTLPFLF----KGQPAEQNK--------------------RYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSSMYNVGQAS-KWLS 758
WN DAL ++ L G +R D STWG A YALSAPLV +R+LFF QILQF GPM+QV+F M LLQF V+LVVM+GF MAL+ RD D F A LG+ G F EF + RY V +L+ VYL I+T+MLLNLLIA+LST+H +V + FKVS+ARII HYR V ++LPAPFNL QL VLTLP+ F K + +E + R+ A A GQ +WLVL AGG +LW S ++ A WLS
Sbjct: 826 WNVLDALGILFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQFHGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVFFRDVADFGDTLLGLFKAMLGETGIFDEF---SGGRYDPVATILVVVYLCIVTVMLLNLLIAILSTEHAQVMENTAEAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLILSLGVIVLTLPYYFLLEAKREHSETERPATDEDGRLFWGNVWEGARHRHRSARRAFGQFVWWLVLGSVAVAGGAMLWSLSGLFYAQYACHSWLS 1112
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE) HSP 1 Score: 176 bits (446), Expect = 2.580e-46 Identity = 125/310 (40.32%), Postives = 163/310 (52.58%), Query Frame = 3
Query: 3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRDDNNSWTFDALGD---------VGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVL--------------------TLPFLFKGQPAEQNKRYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSSMYNVGQASKWLSHFKTS--AELTGASLALNYVMLC-FWCAL 836
WN D L L+ GF R+ D G A YALSAPL+ SR LFF+QI QGPM V+F M VLL+F V+ VVM+GF MA + L RD FD+ G+ G F+ + Y V +LL VYL I+TI+LLNLL+A+LST H+KV D+EFK S AR+++HY+L V +ILPAPFNL QLV+ T L +G+ A Y + +A+G V FW+VL P GG LLW+ S+ +V W H + L+ SL Y + WC L
Sbjct: 632 WNALDLLGLLFFTIGFIARVVDWTQQLGPAFYALSAPLLVSRALFFVQIHPLQGPM--VIFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRD------FDSFGESFLELFKAMFGETTFFNAFSGDTYDAVATMLLVVYLSIVTILLLNLLVAILSTSHSKVQKNIDREFKASIARMMDHYQLVVTNDILPAPFNLLQLVVWPIAWCVGGCCGRSTSGSQSTRQELNRGREA-----YERGNKAIGPVVFWVVLGPVAVVGGTLLWIVSTPLSV---YLWRKHHREGDRKRLSLISLGCRYFFIIPLWCIL 925
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5JMG8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG8_9PHAE) HSP 1 Score: 167 bits (422), Expect = 4.340e-43 Identity = 108/250 (43.20%), Postives = 145/250 (58.00%), Query Frame = 3
Query: 3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRDDNNSWTFDALGD-----VGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTLP-----FLFKGQPAEQNKRYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSS 722
W LALV+ F R D S+WGR LYA+ +PL++ R+L++ Q++ QG IQV++SM L QF VV+ VV++GFAM+ + L RD AL D +G FDD ++ +LL YL+++TIMLLNLLIAVLST H KV+ +VSRAR+ HYR VA + LPAPFNL QLV+ LP LFK + Y A VG++ FWLVL P GG+ +W+ S+
Sbjct: 723 WKAPHFLALVVALAAFLARAIDSDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYSMASELGQFFVVMGVVILGFAMSFFALFRDVKGETLRGALLDAFQAMLGEVGLFDDFVGEKHDLAATVLLVSYLLVMTIMLLNLLIAVLSTAHGKVEEAV--LIRVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCQMVDLLFK------SNTYPIARRGVGRIVFWLVLGPGAILGGIFVWLVST 964
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: D7FR83_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR83_ECTSI) HSP 1 Score: 166 bits (421), Expect = 5.700e-43 Identity = 109/250 (43.60%), Postives = 144/250 (57.60%), Query Frame = 3
Query: 3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRDDNNSWTFDALGD-----VGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTLP-----FLFKGQPAEQNKRYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSS 722
W LALV+ F R D S+WGR LYA+ +PL++ R+L++ Q++ QG IQV++ M L QF VV+ VV++GFAM+ + L RD AL D +G FDD ++ +LL YLV++TIMLLNLLIAVLST H KV+ +VSRAR+ HYR VA + LPAPFNL QLV+ LP LFKG Y A VG++ FWL+L P GGV +W+ S+
Sbjct: 632 WKAPHFLALVVALAAFLARAIDPDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYGMASELGQFFVVMGVVILGFAMSFFALFRDVKGETIRGALLDAFQAMLGEVGLFDDFVGEKHDLAATVLLVSYLVVMTIMLLNLLIAVLSTAHGKVEEAV--LIRVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCKMVDVLFKGNT------YPIARRGVGRIVFWLLLGPGAILGGVFVWLVST 873
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.020e-41 Identity = 107/280 (38.21%), Postives = 150/280 (53.57%), Query Frame = 3
Query: 3 WNFFDALALVMLAGGFFVRL-ADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRDDN---NSWTFDALGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTLPFL-----FK-------------------------------GQPAEQNKRYTKAMEAV-GQVSFWLVLSPFCFAGGVLLWVTS 719
WN D +L +L GG R+ RALYALSAPL F+RILFF QIL QGPMIQVMFSM +L +F +++L+VM+GF + Y L ++ W +G DD + + + V +LL VYLV++TIM+LNLL+AVLST H KVD A E+KV+RAR+I+HY V + LP PFNL+Q + LPF+ F+ + ++++ Y K G+++FW +L P G +LW+ S
Sbjct: 1188 WNLLDVTSLTLLLGGAIQRMYGQVDDESSRALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTAYGEVWKAIFRATLGETDYLDDFSGTTFDGVATVLLVVYLVLLTIMMLNLLVAVLSTAHAKVDANAGLEYKVTRARLIQHYVNVVEIDRLPPPFNLFQWIFALPFMVLDLCFRTSRRPSTASTNSAXXXXXXXXXXXXXXSINGNEKTKRDRSYFKVARGFFGRLAFWAMLGPIAVLAGWVLWMIS 1467
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE) HSP 1 Score: 158 bits (400), Expect = 3.850e-40 Identity = 111/271 (40.96%), Postives = 151/271 (55.72%), Query Frame = 3
Query: 3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQ-----------VMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRD-DNNSWTF-----DALGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVL-TLPFLFKG-------------QPAEQNKR-YTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTS 719
WN D L+L+ L G R+ D S G A YAL+APL+ SR LFF+QI QGPMIQ V+F M +LL+F V+ V+++GF MA + L RD D+ +F LGD F F + Y V LL VYL I+T+MLLNLL+A+LST H +V ++EFKVS AR+++HY+L V ++LP PFNL QL++ + + G Q ++K Y +A+G V FW+VL P GG LLW+ S
Sbjct: 811 WNALDLLSLLFLTIGLVGRVVDWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSFGESFLDLFKAMLGDTDFFKVF---SGDTYDVVATFLLVVYLFIVTVMLLNLLVAILSTSHAQVAENIEREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLIVWPIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIGPVVFWVVLGPVAVIGGSLLWMGS 1078
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5JUV2_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV2_9PHAE) HSP 1 Score: 147 bits (370), Expect = 5.680e-37 Identity = 121/329 (36.78%), Postives = 163/329 (49.54%), Query Frame = 3
Query: 3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQ----------------VMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRD-DNNSWTF-----DALGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVL-TLPFLFKG-------------QPAEQNKR-YTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTS---SMYNVGQASKWLSHF-------------KTSAELTGASLALNYVMLCFWC 830
WN D L+L+ L G R+ D S G A YAL+APL+ SR LFF+QI QGP+IQ V+F M +LL+F V+ V+++GF MA + RD D+ +F LGD F F + Y V LL V L I+T+MLLNLL+A+LST H +V D+EFKVS AR+++HY+L V ++LP PFNL QLV+ + + G Q ++K Y +A+ V FW+VL P GG LLW+ S +MY W H K S L L N ++ C WC
Sbjct: 80 WNALDLLSLLFLTVGLVGRVVDWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPIIQASGEFRQVAKRNVSHSVVFRMTRILLKFGFVMAVILLGFIMAFHVQFRDFDSFGESFLDLFKAMLGDNDFFKVF---SGDTYDFVATFLLVVGLFIVTVMLLNLLVAILSTSHAQVAENIDREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLVVWPIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIEPVVFWVVLGPVAVNGGSLLWMESVLPAMYF------WRKHHRLQNKRENGGGDSKKSMHLWSLFLRYNVIIPC-WC 398
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI) HSP 1 Score: 146 bits (369), Expect = 5.010e-36 Identity = 116/294 (39.46%), Postives = 162/294 (55.10%), Query Frame = 3
Query: 3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRDDNNS---W--TFDA-LGDVGAFAE-FDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTLPFLFKGQPAEQN-KRYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSSMYNVGQASKWLSHFKTSAELTGAS-----------LALNYVMLCFW 827
WN+ ++L+L++LAGG +R+ + GRAL+ALSAPLVFSR+LFF Q L+ QG +IQ+M + +LQFA+VL +MMGF ++ Y L + + W F A LG+V F+E ++DS Y V +LL VYL ++ +MLLNLLIAVLST+H KVD + D F+ S+ RI++ Y V ++LP+PFNL Q+ + L + +G K K M FWL L LW S+ V A W T LT A AL +V+ FW
Sbjct: 556 WNWLESLSLLLLAGGLTIRIRNSDVHQGRALFALSAPLVFSRVLFFGQFLKRQGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALFEEAKSYGDVWLDVFKAMLGEVSVFSEIYEDSV---YRDVARVLLVVYLTVVAVMLLNLLIAVLSTEHAKVDEQQDIAFRESKVRIMKLYVRIVDSDVLPSPFNLPQIAVGL--VARGVDGLLGTKTCPKIMREFSVGVFWLTLGSPAILIAWGLWAASAPMAVLTA--WRRATYTGRSLTVAVACSSVVVVLHVFALPFVLSWFW 842 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig106.23.1 >prot_A-nodosum_M_contig106.23.1 ID=prot_A-nodosum_M_contig106.23.1|Name=mRNA_A-nodosum_M_contig106.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=268bp MLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMback to top mRNA from alignment at A-nodosum_M_contig106:524855..527835+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig106.23.1 ID=mRNA_A-nodosum_M_contig106.23.1|Name=mRNA_A-nodosum_M_contig106.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2981bp|location=Sequence derived from alignment at A-nodosum_M_contig106:524855..527835+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig106:524855..527835+ >mRNA_A-nodosum_M_contig106.23.1 ID=mRNA_A-nodosum_M_contig106.23.1|Name=mRNA_A-nodosum_M_contig106.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at A-nodosum_M_contig106:524855..527835+ (Ascophyllum nodosum dioecious)back to top |