mRNA_A-nodosum_M_contig106.23.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig106.23.1
Unique NamemRNA_A-nodosum_M_contig106.23.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 2.380e-69
Identity = 144/289 (49.83%), Postives = 193/289 (66.78%), Query Frame = 3
Query:    3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRD-DNNSWT----FDA-LGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTLPFLFKGQPAEQNKRYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSSMYNVGQASKWLSHFKTSAE-----LTGASLALNYVMLCFWCAL 836
            WN  D L L ++ GG  VR AD  ++WGRALYALSAPL+FSR+LFF Q+L+F GPMIQV+FSM   L++F VV++VVM+GFAM+ + L  D D    T    F A LG+V  F  F  +   +Y +V   L  +YLV+I +MLLNLLIAVLST H+KV+ KAD+EFKVS+ARIIEHYR+ V   +LP PFNL QL+L+LP + + +   Q    T+A EAVG+++FWL L P   A G +LWV SS++       W +HF + A+     L+  SL + Y+++ FWC L
Sbjct:  871 WNILDLLGLGLVTGGLIVRCADGDNSWGRALYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDTFGGTCLTLFKAMLGEVDFFGSFPGN---QYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMVRDRSG-QGTASTRAQEAVGRMAFWLALGPVAAACGTVLWVLSSLF---APFVWHTHFYSKAQARRGALSVGSLLVRYLIVFFWCVL 1152          
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 7.750e-55
Identity = 134/296 (45.27%), Postives = 169/296 (57.09%), Query Frame = 3
Query:    3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRD-----DNNSWTFDA-LGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTL-------PFLF----KGQPAEQNK--------------------RYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSSMYNVGQASKWLSHFKTSAE 779
            WN  DAL ++ L  G  +R  D  STWG A YALSAPLV +R+LFF QILQFQGPM+QV+F M   LLQF  V+LVVM+GF MAL+ + RD     D     F A LG+ G F EF   +  RY  V  +L+ VYL I+T+MLLNLLIA+LST+H +V       FKVS+ARII HYR  V  ++LPAPFNL QL+L+L       P+ F    K + +E  +                    R+  A  A GQ+ +WLVL P   AGG +LW  S  +    A  W S   T+ E
Sbjct:  809 WNVLDALGMLFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQFQGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVEDFGDTLLGLFKAMLGETGFFDEF---SGGRYDPVATILVVVYLFIVTVMLLNLLIAILSTEHAQVQENTGGAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLLLSLGVIAMTFPYCFLLEAKREQSETERPAIDEHGRLFWGNVWEGARQRHRGARRAFGQLVWWLVLGPVAVAGGAILWGLSGFFYAQYA--WHSWLSTTDE 1099          
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 6.880e-54
Identity = 133/290 (45.86%), Postives = 165/290 (56.90%), Query Frame = 3
Query:    3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRD-----DNNSWTFDA-LGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQL-------VLTLPFLF----KGQPAEQNK--------------------RYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSSMYNVGQAS-KWLS 758
            WN  DAL ++ L  G  +R  D  STWG A YALSAPLV +R+LFF QILQF GPM+QV+F M   LLQF  V+LVVM+GF MAL+   RD     D     F A LG+ G F EF   +  RY  V  +L+ VYL I+T+MLLNLLIA+LST+H +V     + FKVS+ARII HYR  V  ++LPAPFNL QL       VLTLP+ F    K + +E  +                    R+  A  A GQ  +WLVL     AGG +LW  S ++    A   WLS
Sbjct:  826 WNVLDALGILFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQFHGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVFFRDVADFGDTLLGLFKAMLGETGIFDEF---SGGRYDPVATILVVVYLCIVTVMLLNLLIAILSTEHAQVMENTAEAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLILSLGVIVLTLPYYFLLEAKREHSETERPATDEDGRLFWGNVWEGARHRHRSARRAFGQFVWWLVLGSVAVAGGAMLWSLSGLFYAQYACHSWLS 1112          
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.580e-46
Identity = 125/310 (40.32%), Postives = 163/310 (52.58%), Query Frame = 3
Query:    3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRDDNNSWTFDALGD---------VGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVL--------------------TLPFLFKGQPAEQNKRYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSSMYNVGQASKWLSHFKTS--AELTGASLALNYVMLC-FWCAL 836
            WN  D L L+    GF  R+ D     G A YALSAPL+ SR LFF+QI   QGPM  V+F M  VLL+F  V+ VVM+GF MA + L RD      FD+ G+          G    F+  +   Y  V  +LL VYL I+TI+LLNLL+A+LST H+KV    D+EFK S AR+++HY+L V  +ILPAPFNL QLV+                    T   L +G+ A     Y +  +A+G V FW+VL P    GG LLW+ S+  +V     W  H +      L+  SL   Y  +   WC L
Sbjct:  632 WNALDLLGLLFFTIGFIARVVDWTQQLGPAFYALSAPLLVSRALFFVQIHPLQGPM--VIFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRD------FDSFGESFLELFKAMFGETTFFNAFSGDTYDAVATMLLVVYLSIVTILLLNLLVAILSTSHSKVQKNIDREFKASIARMMDHYQLVVTNDILPAPFNLLQLVVWPIAWCVGGCCGRSTSGSQSTRQELNRGREA-----YERGNKAIGPVVFWVVLGPVAVVGGTLLWIVSTPLSV---YLWRKHHREGDRKRLSLISLGCRYFFIIPLWCIL 925          
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5JMG8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG8_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 4.340e-43
Identity = 108/250 (43.20%), Postives = 145/250 (58.00%), Query Frame = 3
Query:    3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRDDNNSWTFDALGD-----VGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTLP-----FLFKGQPAEQNKRYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSS 722
            W     LALV+    F  R  D  S+WGR LYA+ +PL++ R+L++ Q++  QG  IQV++SM   L QF VV+ VV++GFAM+ + L RD        AL D     +G    FDD    ++     +LL  YL+++TIMLLNLLIAVLST H KV+       +VSRAR+  HYR  VA + LPAPFNL QLV+ LP      LFK      +  Y  A   VG++ FWLVL P    GG+ +W+ S+
Sbjct:  723 WKAPHFLALVVALAAFLARAIDSDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYSMASELGQFFVVMGVVILGFAMSFFALFRDVKGETLRGALLDAFQAMLGEVGLFDDFVGEKHDLAATVLLVSYLLVMTIMLLNLLIAVLSTAHGKVEEAV--LIRVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCQMVDLLFK------SNTYPIARRGVGRIVFWLVLGPGAILGGIFVWLVST 964          
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: D7FR83_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR83_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 5.700e-43
Identity = 109/250 (43.60%), Postives = 144/250 (57.60%), Query Frame = 3
Query:    3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRDDNNSWTFDALGD-----VGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTLP-----FLFKGQPAEQNKRYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSS 722
            W     LALV+    F  R  D  S+WGR LYA+ +PL++ R+L++ Q++  QG  IQV++ M   L QF VV+ VV++GFAM+ + L RD        AL D     +G    FDD    ++     +LL  YLV++TIMLLNLLIAVLST H KV+       +VSRAR+  HYR  VA + LPAPFNL QLV+ LP      LFKG        Y  A   VG++ FWL+L P    GGV +W+ S+
Sbjct:  632 WKAPHFLALVVALAAFLARAIDPDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYGMASELGQFFVVMGVVILGFAMSFFALFRDVKGETIRGALLDAFQAMLGEVGLFDDFVGEKHDLAATVLLVSYLVVMTIMLLNLLIAVLSTAHGKVEEAV--LIRVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCKMVDVLFKGNT------YPIARRGVGRIVFWLLLGPGAILGGVFVWLVST 873          
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.020e-41
Identity = 107/280 (38.21%), Postives = 150/280 (53.57%), Query Frame = 3
Query:    3 WNFFDALALVMLAGGFFVRL-ADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRDDN---NSWTFDALGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTLPFL-----FK-------------------------------GQPAEQNKRYTKAMEAV-GQVSFWLVLSPFCFAGGVLLWVTS 719
            WN  D  +L +L GG   R+         RALYALSAPL F+RILFF QIL  QGPMIQVMFSM  +L +F +++L+VM+GF  + Y L ++       W       +G     DD + + +  V  +LL VYLV++TIM+LNLL+AVLST H KVD  A  E+KV+RAR+I+HY   V  + LP PFNL+Q +  LPF+     F+                                +  ++++ Y K      G+++FW +L P     G +LW+ S
Sbjct: 1188 WNLLDVTSLTLLLGGAIQRMYGQVDDESSRALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTAYGEVWKAIFRATLGETDYLDDFSGTTFDGVATVLLVVYLVLLTIMMLNLLVAVLSTAHAKVDANAGLEYKVTRARLIQHYVNVVEIDRLPPPFNLFQWIFALPFMVLDLCFRTSRRPSTASTNSAXXXXXXXXXXXXXXSINGNEKTKRDRSYFKVARGFFGRLAFWAMLGPIAVLAGWVLWMIS 1467          
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 3.850e-40
Identity = 111/271 (40.96%), Postives = 151/271 (55.72%), Query Frame = 3
Query:    3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQ-----------VMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRD-DNNSWTF-----DALGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVL-TLPFLFKG-------------QPAEQNKR-YTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTS 719
            WN  D L+L+ L  G   R+ D  S  G A YAL+APL+ SR LFF+QI   QGPMIQ           V+F M  +LL+F  V+ V+++GF MA + L RD D+   +F       LGD   F  F   +   Y  V   LL VYL I+T+MLLNLL+A+LST H +V    ++EFKVS AR+++HY+L V  ++LP PFNL QL++  + +   G             Q   ++K  Y    +A+G V FW+VL P    GG LLW+ S
Sbjct:  811 WNALDLLSLLFLTIGLVGRVVDWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSFGESFLDLFKAMLGDTDFFKVF---SGDTYDVVATFLLVVYLFIVTVMLLNLLVAILSTSHAQVAENIEREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLIVWPIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIGPVVFWVVLGPVAVIGGSLLWMGS 1078          
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: A0A6H5JUV2_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV2_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 5.680e-37
Identity = 121/329 (36.78%), Postives = 163/329 (49.54%), Query Frame = 3
Query:    3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQ----------------VMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRD-DNNSWTF-----DALGDVGAFAEFDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVL-TLPFLFKG-------------QPAEQNKR-YTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTS---SMYNVGQASKWLSHF-------------KTSAELTGASLALNYVMLCFWC 830
            WN  D L+L+ L  G   R+ D  S  G A YAL+APL+ SR LFF+QI   QGP+IQ                V+F M  +LL+F  V+ V+++GF MA +   RD D+   +F       LGD   F  F   +   Y  V   LL V L I+T+MLLNLL+A+LST H +V    D+EFKVS AR+++HY+L V  ++LP PFNL QLV+  + +   G             Q   ++K  Y    +A+  V FW+VL P    GG LLW+ S   +MY       W  H              K S  L    L  N ++ C WC
Sbjct:   80 WNALDLLSLLFLTVGLVGRVVDWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPIIQASGEFRQVAKRNVSHSVVFRMTRILLKFGFVMAVILLGFIMAFHVQFRDFDSFGESFLDLFKAMLGDNDFFKVF---SGDTYDFVATFLLVVGLFIVTVMLLNLLVAILSTSHAQVAENIDREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLVVWPIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIEPVVFWVVLGPVAVNGGSLLWMESVLPAMYF------WRKHHRLQNKRENGGGDSKKSMHLWSLFLRYNVIIPC-WC 398          
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 5.010e-36
Identity = 116/294 (39.46%), Postives = 162/294 (55.10%), Query Frame = 3
Query:    3 WNFFDALALVMLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVMFSMGLVLLQFAVVLLVVMMGFAMALYPLLRDDNNS---W--TFDA-LGDVGAFAE-FDDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEFKVSRARIIEHYRLAVAFNILPAPFNLWQLVLTLPFLFKGQPAEQN-KRYTKAMEAVGQVSFWLVLSPFCFAGGVLLWVTSSMYNVGQASKWLSHFKTSAELTGAS-----------LALNYVMLCFW 827
            WN+ ++L+L++LAGG  +R+ +     GRAL+ALSAPLVFSR+LFF Q L+ QG +IQ+M  +   +LQFA+VL  +MMGF ++ Y L  +  +    W   F A LG+V  F+E ++DS    Y  V  +LL VYL ++ +MLLNLLIAVLST+H KVD + D  F+ S+ RI++ Y   V  ++LP+PFNL Q+ + L  + +G       K   K M       FWL L          LW  S+   V  A  W     T   LT A             AL +V+  FW
Sbjct:  556 WNWLESLSLLLLAGGLTIRIRNSDVHQGRALFALSAPLVFSRVLFFGQFLKRQGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALFEEAKSYGDVWLDVFKAMLGEVSVFSEIYEDSV---YRDVARVLLVVYLTVVAVMLLNLLIAVLSTEHAKVDEQQDIAFRESKVRIMKLYVRIVDSDVLPSPFNLPQIAVGL--VARGVDGLLGTKTCPKIMREFSVGVFWLTLGSPAILIAWGLWAASAPMAVLTA--WRRATYTGRSLTVAVACSSVVVVLHVFALPFVLSWFW 842          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig106.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLB1_ECTSI2.380e-6949.83Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FZR6_ECTSI7.750e-5545.27Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KBU4_9PHAE6.880e-5445.86Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JG42_9PHAE2.580e-4640.32Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMG8_9PHAE4.340e-4343.20Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR83_ECTSI5.700e-4343.60Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
A0A6H5LDE6_9PHAE1.020e-4138.21Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJG3_9PHAE3.850e-4040.96Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JUV2_9PHAE5.680e-3736.78Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
D7FMG5_ECTSI5.010e-3639.46Transient receptor potential channel n=1 Tax=Ectoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig106contigA-nodosum_M_contig106:524855..527835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLB1
PFAMsIon_trans
Model size838
Max annot lvl2759|Eukaryota
KEGG koko:K04981
KEGG TC1.A.4.5.8
KEGG Pathwayko04978,map04978
Hectar predicted targeting categorysignal anchor
Exons3
Evalue1.2e-66
EggNOG OGsKOG3614@1|root,KOG3614@2759|Eukaryota
EC2.7.11.1
Descriptionion channel activity
Cds size804
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko04040
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866445.8650043-UTR-A-nodosum_M_contig106:524854..5248861680866445.8650043-UTR-A-nodosum_M_contig106:524854..524886Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig106 524855..524886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866445.8789332-CDS-A-nodosum_M_contig106:524886..5250301680866445.8789332-CDS-A-nodosum_M_contig106:524886..525030Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig106 524887..525030 +
1680866445.8901138-CDS-A-nodosum_M_contig106:527148..5272731680866445.8901138-CDS-A-nodosum_M_contig106:527148..527273Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig106 527149..527273 +
1680866445.8998995-CDS-A-nodosum_M_contig106:527300..5278351680866445.8998995-CDS-A-nodosum_M_contig106:527300..527835Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig106 527301..527835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig106.23.1prot_A-nodosum_M_contig106.23.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig106 524887..527835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig106.23.1

>prot_A-nodosum_M_contig106.23.1 ID=prot_A-nodosum_M_contig106.23.1|Name=mRNA_A-nodosum_M_contig106.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=268bp
MLAGGFFVRLADCGSTWGRALYALSAPLVFSRILFFMQILQFQGPMIQVM
FSMGLVLLQFAVVLLVVMMGFAMALYPLLRDDNNSWTFDALGDVGAFAEF
DDSAQSRYSTVGHLLLAVYLVIITIMLLNLLIAVLSTKHTKVDVKADKEF
KVSRARIIEHYRLAVAFNILPAPFNLWQLVLTLPFLFKGQPAEQNKRYTK
AMEAVGQVSFWLVLSPFCFAGGVLLWVTSSMYNVGQASKWLSHFKTSAEL
TGASLALNYVMLCFWCAL
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mRNA from alignment at A-nodosum_M_contig106:524855..527835+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig106.23.1 ID=mRNA_A-nodosum_M_contig106.23.1|Name=mRNA_A-nodosum_M_contig106.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2981bp|location=Sequence derived from alignment at A-nodosum_M_contig106:524855..527835+ (Ascophyllum nodosum dioecious)
CCTGGAACTTCTTCGATGCACTCGCTCTCGTGATGCTAGCTGGAGGGTTT TTTGTGCGACTCGCGGATTGCGGCAGTACCTGGGGCCGAGCTCTATACGC TTTGAGTGCACCGTTGGTATTTTCGCGCATCCTGTTCTTCATGCAGATCC TACAGTTTCAAGGGCCAATGATACAGGTGGGCGTTAATCAAATAAGAAAA CCCCATTTGGCTGGGGGATGTTTGTTTTTTCTTCGATACCTGGAATAGTA ATATTCACGATATATGTTGTTTGCCATAGGTGCACACGGAGAAAGATATT ATCTTCCAGATCCGGAAAAAAATAGCCTTTACTGTCGGCTGTGTATAAAA AACAGATCCGAGAGTTTATAGGTGCACTATCAACAAAATGGTCGACAGTA TTAAGGCTCAACAACTTATTTTCGTTGTTTCAATTTTATTGGCTTATCGA GGAATCATCGATTTTTTTCTCATCGTGCACCTCTGCAGAAAACTATAAAT TCGTTGACGGAGAAACGTCAAACGACGAAACAAATGAAAGAGAAGAATCA CCAAAAAGTAGATGGCTTGCGTTTCGCCGAAAGTACAAGCAGCCTAGCTA AACCAAGCCTACAACACATCATCCCACTGCAAAACATTAGTGTAATAGCA GGCATCACGGGTTCCCAGTCAGCGACATAGTATAATTAATTCCGACAGCG AAACGATGCGCCAGCCCCGTACCGTACACGAGAAAAGAGGCGCCAGACGG GATAATATAGAGAGTGTATATGCTGTCTTGGAATTTTCTTTTGGTGTCTA CCCTCCCCTGTCAACTGTTACATGTTGCTGTTGTAGTGTGTGCGAATGCT ATTACTTGTTAATACTGTTAGTTGTTATTGGTGTTACCGGACGGAAGCAT CGCCAGCGATTTGTGCCTTCGAGGCTAATAGATATCAACTCGGTCGTTGT TGCTGGAAGGTATTCCGTCTTGGGTACCGAGAGCAGCCGAGCGATACTAA TCCCGCGTTTGGTTTGCTGAAGAGGAAAAATAACAAAGAGAAACAGTAGA AAATATGTATACCTTTACTATTACTATTACTATTAATAACATTGCTAATC TCTGATCTGATCTGATCTAATCTAATCTACAGGAGTGCCACTGCTGATAC GGAGGGAAAGAAGCAAAAGGTAAAGATAGACAAAACAACCCCACAAGAAA ACACACAAGTACAGCAAAGACAACAAAAAAGATTCAGAGGGGCACGTTGT GACGCATCCAAATGCCTAGACGCTACGGAGGTCGGGGTCTATCTCGTGCG CGTACAAGATTCCCTAATCGATGACACTTCGGAGATTCTACGCTACCCTT TAATAGTAAATATTTTTTCCTGGGTTTGTTTGTCTCTCTCTTCCTGACGA AGTCTAGCAGCCTCTTCCTCCTCTTTCCTCCTCGCTGTCATAACCCTCCA CCCCCCTCTGTGGCCGTCTCAACCCACGACCATGCCTTCAGTACCGACGC GTTCCTGTTCTTCGCCATGTCAAACGCCTTGACGTCGCTCTGCACGCAAT AGATCTCCTTTTTCTCCTTCCCTCCCCGTCCTCTCCACAATGCATCCTCA AGTTTGTCGACCACGAATTGCTTTGGTTACCACCCGCCACTCATTCGGGT AACAAATCAGAAGTATTTTCGTGCGCACGGTGGCCTCGATGCTCTCAAAT CTAGTTATCTCTCAAGAGCACGTTGTAGGGAGTCTTACCGTGTTTGACCT ATTGCGCTGTGCCCCGATGTTGCGAACCAAGACCTGGTGGTGTACGGTGG CGAGTTTGGAGTAGTGTTCCTGGCGGAAGGCCCACGTATTGCATCCATAC AGGAAGGTCTTGATTGCCTCGCCCTTAACCATTTGGGTCTTGAGAGCTAG TCCATTAGGTTTTCCTTGCTGCATTATTTTATTTACCATTTTGTCGTTGG TACAGGTTCTAAGCTAAGTGGGCACATCATAGCAAGGGTATCAGCAAAGA GCTTTCCGACGAATCCTCTGTGATCGAAAGGAACCCAACTACTTGGGAGT ATCAGTTATTCCGTCTTCTTAATGAGTTTGATGGATAACCGCCACGTTTC ATGTCGAGAGAAATCCTGCGTCGTATGGATCAACCTACAACAACAGTGTA GCTTAGAGAATGGTATCTCCATTGCTCTTCTAGTGGCTGGCGTATGCCAT GCACCCGCAAAGATCTCTTGTGTTATTTTTCACTTGATTCACATTCGCGT TATGTTGCGATTTTTCACACGCCTCTATCTGATATCTCTTGCAGGTGATG TTCAGCATGGGATTGGTTCTCCTACAGTTCGCGGTCGTCTTGTTGGTAGT CATGATGGGATTCGCAATGGCACTTTACCCGCTCTTGCGAGACGACAACA ACAGCTGGACTTTCGACGCGATTTCACTTCTCCTCTTCAAAACTCTGCTG GGCGACGTGGGAGCATTCGCAGAGTTCGATGACAGCGCGCAAAGCCGTTA TTCCACTGTCGGGCACCTGTTACTGGCAGTGTACCTCGTAATAATTACTA TCATGCTGCTCAACCTTCTCATCGCAGTCCTGAGTACGAAGCACACCAAA GTAGATGTGAAGGCCGACAAGGAGTTTAAGGTCTCTAGGGCGAGGATAAT AGAGCATTACCGGCTAGCCGTGGCGTTCAACATCCTTCCGGCACCCTTTA ACTTATGGCAGTTGGTCTTAACCTTGCCGTTTCTGTTCAAGGGTCAACCA GCCGAGCAAAACAAAAGGTATACTAAAGCGATGGAAGCAGTGGGACAGGT CTCTTTCTGGCTAGTTTTGAGTCCGTTTTGTTTTGCCGGTGGGGTTCTGC TATGGGTTACTTCGAGCATGTATAACGTTGGCCAAGCATCTAAATGGCTG AGTCATTTTAAAACCTCAGCAGAACTGACGGGGGCATCTCTAGCTCTAAA TTACGTTATGTTGTGTTTTTGGTGTGCTTTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig106:524855..527835+

>mRNA_A-nodosum_M_contig106.23.1 ID=mRNA_A-nodosum_M_contig106.23.1|Name=mRNA_A-nodosum_M_contig106.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at A-nodosum_M_contig106:524855..527835+ (Ascophyllum nodosum dioecious)
ATGCTAGCTGGAGGGTTTTTTGTGCGACTCGCGGATTGCGGCAGTACCTG
GGGCCGAGCTCTATACGCTTTGAGTGCACCGTTGGTATTTTCGCGCATCC
TGTTCTTCATGCAGATCCTACAGTTTCAAGGGCCAATGATACAGGTGATG
TTCAGCATGGGATTGGTTCTCCTACAGTTCGCGGTCGTCTTGTTGGTAGT
CATGATGGGATTCGCAATGGCACTTTACCCGCTCTTGCGAGACGACAACA
ACAGCTGGACTTTCGACGCGCTGGGCGACGTGGGAGCATTCGCAGAGTTC
GATGACAGCGCGCAAAGCCGTTATTCCACTGTCGGGCACCTGTTACTGGC
AGTGTACCTCGTAATAATTACTATCATGCTGCTCAACCTTCTCATCGCAG
TCCTGAGTACGAAGCACACCAAAGTAGATGTGAAGGCCGACAAGGAGTTT
AAGGTCTCTAGGGCGAGGATAATAGAGCATTACCGGCTAGCCGTGGCGTT
CAACATCCTTCCGGCACCCTTTAACTTATGGCAGTTGGTCTTAACCTTGC
CGTTTCTGTTCAAGGGTCAACCAGCCGAGCAAAACAAAAGGTATACTAAA
GCGATGGAAGCAGTGGGACAGGTCTCTTTCTGGCTAGTTTTGAGTCCGTT
TTGTTTTGCCGGTGGGGTTCTGCTATGGGTTACTTCGAGCATGTATAACG
TTGGCCAAGCATCTAAATGGCTGAGTCATTTTAAAACCTCAGCAGAACTG
ACGGGGGCATCTCTAGCTCTAAATTACGTTATGTTGTGTTTTTGGTGTGC
TTTG
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