mRNA_A-nodosum_M_contig106.22.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig106.22.1
Unique NamemRNA_A-nodosum_M_contig106.22.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 9.300e-17
Identity = 48/83 (57.83%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  166 VLQGADAQYL-----ILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAEIFFASYVL 399
            +LQGA+   L      LTFLPGAQF IAGL+  P+ YYRVPAMRM +D  VY+ ML F+S  VL HED PLT  E  FA Y+L
Sbjct:  767 LLQGANCAGLWNTAVSLTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDGPLTPGEAAFAFYIL 849          
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.550e-11
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  160 RGVLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAE 375
            R +LQGA+ +   LTFLPGAQF IAG LAKPN YYR+PA+RM +D VVY++++   S  V   +   LT  E
Sbjct:  240 RALLQGANDRLASLTFLPGAQFAIAGFLAKPNNYYRIPAVRMVLDVVVYLLVIIALSILVF-RDSGSLTRGE 310          
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.080e-11
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  151 SFLRGVLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHE 351
            + L+GV QG       LTFLPGAQFI+A ++A P  YY VPAMRM +DFVVY+ M+A  S+ VL H 
Sbjct:  692 ALLKGVRQGIWDNTPTLTFLPGAQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAALSYFVLFHS 758          
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.900e-11
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   19 LRDKTALSRLAED-DVVGGGLVLGYTQDSDGRHVFDRDPFG-ESWISFLRGVLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHE 351
            L+D   + R +ED   +G GLVLG      G  V    P G +S +S L  +LQ A      L F PGAQF +AG+ A P+ YYRVPAMRM +DFV Y+ ++A   + V  H 
Sbjct:  317 LQDTEGVLRNSEDLKCLGAGLVLG----DGGEDV----PSGCKSILSRLSVLLQAAQDDLPNLAFFPGAQFAVAGVAADPSTYYRVPAMRMLLDFVAYVEIIAALGYLVFFHS 421          
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 7.870e-11
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  151 SFLRGVLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHE 351
            + L+GV QG      ILTFLPG QFI+A ++A P  YY VPAMRM +DFVVY+ M+A  S  VL H 
Sbjct:  709 ALLKGVRQGIWDNTPILTFLPGTQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAVLSSFVLFHS 775          
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.450e-10
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  160 RGVLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAE 375
            R +LQGA+ ++  LT  PGAQ I+AGL A+PN Y+RVPAMRM +D VVYI M+   S  VL H     +  E
Sbjct:  693 RALLQGANDRFPSLTPFPGAQVIVAGLAARPNDYFRVPAMRMVLDLVVYIGMIVALSTFVLFHSQAEKSYVE 764          
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 9.320e-10
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   73 GLVLGYTQDSD-GRHVFDRDPFGESWISFLRGVLQGADAQYLI--LTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHE-DEPLTTAEIFFASYV 396
            G++L  T  ++ G+ ++      E  + F    LQ + A   +  +T+ PGA+FIIAGLL++P  YY+VPA+RM +D V YI+M+  +   V+LH+  +     EI F  Y+
Sbjct:  809 GVLLNNTSFTEPGQTLYGDGLLAEGRVFFFGMALQRSYAGGTLSSITYFPGARFIIAGLLSRPGSYYKVPALRMCLDLVTYILMMIIFGGFVILHDAGDTFDWMEIVFTMYI 920          
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: A0A6H5JX68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX68_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.410e-8
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  202 TFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAEIFFASYVL 399
            TFLPGAQF++ G+L KP  YY+VP MRM + F V+++ LA Y+   L  +D  L+  EI    +V+
Sbjct:  481 TFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTTVALESDDAELSNTEIALTFHVM 546          
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.020e-8
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  202 TFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAEIFFASYVL 399
            TFLPGAQF++ G+L KP  YY+VP MRM + F V+++ LA Y+   L  +D  L+  EI    +V+
Sbjct:  469 TFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTAVALESDDGELSNTEIALTFHVM 534          
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: A0A6H5KIV5_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIV5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.440e-7
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  166 VLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAEIFFASYVL 399
            VL+G+ +    LT   G QFI+A ++A+P   Y VPA+RMA+D +VY++MLA ++  VL +++  +   E+ F  YVL
Sbjct:  374 VLEGSHSVLGSLTLSAGKQFILAQVVARPAFSYSVPAVRMAVDLLVYLLMLALFAKDVLWYKEGTVEVGEVVFFVYVL 451          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FLB1_ECTSI9.300e-1757.83Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JCX0_9PHAE1.550e-1152.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZR6_ECTSI3.080e-1155.22Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7G6K7_ECTSI3.900e-1142.48Transient Receptor Potential Channel. C terminally... [more]
A0A6H5KBU4_9PHAE7.870e-1155.22Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJG3_9PHAE1.450e-1051.39Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
D8LT30_ECTSI9.320e-1035.71Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JX68_9PHAE1.410e-845.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMG5_ECTSI2.020e-845.45Transient receptor potential channel n=1 Tax=Ectoc... [more]
A0A6H5KIV5_9PHAE4.440e-741.03Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig106contigA-nodosum_M_contig106:524063..524462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FLB1
PFAMsIon_trans
Model size400
Max annot lvl2759|Eukaryota
KEGG koko:K04981
KEGG TC1.A.4.5.8
KEGG Pathwayko04978,map04978
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.52e-17
EggNOG OGsKOG3614@1|root,KOG3614@2759|Eukaryota
EC2.7.11.1
Descriptionion channel activity
Cds size399
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866445.8364272-CDS-A-nodosum_M_contig106:524062..5244611680866445.8364272-CDS-A-nodosum_M_contig106:524062..524461Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig106 524063..524461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig106.22.1prot_A-nodosum_M_contig106.22.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig106 524063..524461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig106.22.1

>prot_A-nodosum_M_contig106.22.1 ID=prot_A-nodosum_M_contig106.22.1|Name=mRNA_A-nodosum_M_contig106.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=133bp
RDSGRVLRDKTALSRLAEDDVVGGGLVLGYTQDSDGRHVFDRDPFGESWI
SFLRGVLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFV
VYIMMLAFYSFCVLLHEDEPLTTAEIFFASYVL
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mRNA from alignment at A-nodosum_M_contig106:524063..524462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig106.22.1 ID=mRNA_A-nodosum_M_contig106.22.1|Name=mRNA_A-nodosum_M_contig106.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=400bp|location=Sequence derived from alignment at A-nodosum_M_contig106:524063..524462+ (Ascophyllum nodosum dioecious)
CGAGACTCAGGCCGTGTTCTTCGAGATAAAACCGCGTTGTCGCGTCTAGC TGAAGACGATGTGGTGGGTGGTGGGCTTGTTCTTGGTTATACACAGGATT CAGACGGCCGTCATGTTTTCGATCGCGATCCTTTCGGCGAGTCTTGGATT TCATTTCTCCGTGGGGTTCTACAAGGAGCGGATGCTCAGTATCTCATTTT AACATTTCTGCCTGGGGCCCAATTCATCATCGCCGGTCTACTGGCAAAGC CAAACGTATACTACAGAGTCCCTGCCATGAGGATGGCGATGGATTTCGTG GTGTATATCATGATGCTGGCTTTTTACAGCTTCTGTGTGCTGTTACACGA AGACGAGCCGCTGACAACCGCAGAAATCTTCTTTGCTTCCTACGTTCTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig106:524063..524462+

>mRNA_A-nodosum_M_contig106.22.1 ID=mRNA_A-nodosum_M_contig106.22.1|Name=mRNA_A-nodosum_M_contig106.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig106:524063..524462+ (Ascophyllum nodosum dioecious)
CGAGACTCAGGCCGTGTTCTTCGAGATAAAACCGCGTTGTCGCGTCTAGC
TGAAGACGATGTGGTGGGTGGTGGGCTTGTTCTTGGTTATACACAGGATT
CAGACGGCCGTCATGTTTTCGATCGCGATCCTTTCGGCGAGTCTTGGATT
TCATTTCTCCGTGGGGTTCTACAAGGAGCGGATGCTCAGTATCTCATTTT
AACATTTCTGCCTGGGGCCCAATTCATCATCGCCGGTCTACTGGCAAAGC
CAAACGTATACTACAGAGTCCCTGCCATGAGGATGGCGATGGATTTCGTG
GTGTATATCATGATGCTGGCTTTTTACAGCTTCTGTGTGCTGTTACACGA
AGACGAGCCGCTGACAACCGCAGAAATCTTCTTTGCTTCCTACGTTCTG
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