mRNA_A-nodosum_M_contig106.22.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 9.300e-17 Identity = 48/83 (57.83%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 166 VLQGADAQYL-----ILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAEIFFASYVL 399
+LQGA+ L LTFLPGAQF IAGL+ P+ YYRVPAMRM +D VY+ ML F+S VL HED PLT E FA Y+L
Sbjct: 767 LLQGANCAGLWNTAVSLTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDGPLTPGEAAFAFYIL 849
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.550e-11 Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 160 RGVLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAE 375
R +LQGA+ + LTFLPGAQF IAG LAKPN YYR+PA+RM +D VVY++++ S V + LT E
Sbjct: 240 RALLQGANDRLASLTFLPGAQFAIAGFLAKPNNYYRIPAVRMVLDVVVYLLVIIALSILVF-RDSGSLTRGE 310
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 3.080e-11 Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 151 SFLRGVLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHE 351
+ L+GV QG LTFLPGAQFI+A ++A P YY VPAMRM +DFVVY+ M+A S+ VL H
Sbjct: 692 ALLKGVRQGIWDNTPTLTFLPGAQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAALSYFVLFHS 758
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 3.900e-11 Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 19 LRDKTALSRLAED-DVVGGGLVLGYTQDSDGRHVFDRDPFG-ESWISFLRGVLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHE 351
L+D + R +ED +G GLVLG G V P G +S +S L +LQ A L F PGAQF +AG+ A P+ YYRVPAMRM +DFV Y+ ++A + V H
Sbjct: 317 LQDTEGVLRNSEDLKCLGAGLVLG----DGGEDV----PSGCKSILSRLSVLLQAAQDDLPNLAFFPGAQFAVAGVAADPSTYYRVPAMRMLLDFVAYVEIIAALGYLVFFHS 421
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 7.870e-11 Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 151 SFLRGVLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHE 351
+ L+GV QG ILTFLPG QFI+A ++A P YY VPAMRM +DFVVY+ M+A S VL H
Sbjct: 709 ALLKGVRQGIWDNTPILTFLPGTQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAVLSSFVLFHS 775
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 1.450e-10 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 160 RGVLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAE 375
R +LQGA+ ++ LT PGAQ I+AGL A+PN Y+RVPAMRM +D VVYI M+ S VL H + E
Sbjct: 693 RALLQGANDRFPSLTPFPGAQVIVAGLAARPNDYFRVPAMRMVLDLVVYIGMIVALSTFVLFHSQAEKSYVE 764
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 9.320e-10 Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 73 GLVLGYTQDSD-GRHVFDRDPFGESWISFLRGVLQGADAQYLI--LTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHE-DEPLTTAEIFFASYV 396
G++L T ++ G+ ++ E + F LQ + A + +T+ PGA+FIIAGLL++P YY+VPA+RM +D V YI+M+ + V+LH+ + EI F Y+
Sbjct: 809 GVLLNNTSFTEPGQTLYGDGLLAEGRVFFFGMALQRSYAGGTLSSITYFPGARFIIAGLLSRPGSYYKVPALRMCLDLVTYILMMIIFGGFVILHDAGDTFDWMEIVFTMYI 920
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: A0A6H5JX68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX68_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 1.410e-8 Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 202 TFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAEIFFASYVL 399
TFLPGAQF++ G+L KP YY+VP MRM + F V+++ LA Y+ L +D L+ EI +V+
Sbjct: 481 TFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTTVALESDDAELSNTEIALTFHVM 546
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 2.020e-8 Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 202 TFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAEIFFASYVL 399
TFLPGAQF++ G+L KP YY+VP MRM + F V+++ LA Y+ L +D L+ EI +V+
Sbjct: 469 TFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTAVALESDDGELSNTEIALTFHVM 534
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Match: A0A6H5KIV5_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIV5_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 4.440e-7 Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 166 VLQGADAQYLILTFLPGAQFIIAGLLAKPNVYYRVPAMRMAMDFVVYIMMLAFYSFCVLLHEDEPLTTAEIFFASYVL 399
VL+G+ + LT G QFI+A ++A+P Y VPA+RMA+D +VY++MLA ++ VL +++ + E+ F YVL
Sbjct: 374 VLEGSHSVLGSLTLSAGKQFILAQVVARPAFSYSVPAVRMAVDLLVYLLMLALFAKDVLWYKEGTVEVGEVVFFVYVL 451 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig106.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig106.22.1 >prot_A-nodosum_M_contig106.22.1 ID=prot_A-nodosum_M_contig106.22.1|Name=mRNA_A-nodosum_M_contig106.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=133bp RDSGRVLRDKTALSRLAEDDVVGGGLVLGYTQDSDGRHVFDRDPFGESWIback to top mRNA from alignment at A-nodosum_M_contig106:524063..524462+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig106.22.1 ID=mRNA_A-nodosum_M_contig106.22.1|Name=mRNA_A-nodosum_M_contig106.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=400bp|location=Sequence derived from alignment at A-nodosum_M_contig106:524063..524462+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig106:524063..524462+ >mRNA_A-nodosum_M_contig106.22.1 ID=mRNA_A-nodosum_M_contig106.22.1|Name=mRNA_A-nodosum_M_contig106.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig106:524063..524462+ (Ascophyllum nodosum dioecious)back to top |