mRNA_A-nodosum_M_contig106.21.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig106.21.1
Unique NamemRNA_A-nodosum_M_contig106.21.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig106.21.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 8.740e-34
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = 1
Query:   25 LTEVESASNPLIPGMNLSVPLAEAAVGAREGERRRLISLQNRVDKYLLEVLERLPQTIQGFDKGMTQCSALFEPEGPRNGLCGRPGPLRVAFERRHQMESLCTVPLVMDYLSRR 366
            L  V  + NP +PGM LS+  A++A  A EGERR+L+SLQ RVD  LLE+LERLPQT+QGFD GMT CSA+FEPE  R    G PGPLR+A + R  +++ CT PL+ D+LSRR
Sbjct:  566 LETVACSDNPFVPGMTLSIAFAKSASVAPEGERRKLLSLQERVDTLLLEILERLPQTVQGFDGGMTGCSAVFEPELSREDARGLPGPLRLALQERQHVQTFCTQPLLTDFLSRR 679          
BLAST of mRNA_A-nodosum_M_contig106.21.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.340e-31
Identity = 64/122 (52.46%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    1 WPIFTESLLTEVESASNPLIPGMNLSVPLAEAAVGAREGERRRLISLQNRVDKYLLEVLERLPQTIQGFDKGMTQCSALFEPEGPRNGLCGRPGPLRVAFERRHQMESLCTVPLVMDYLSRR 366
            +P   ESLL  + SA NP IPGMNLSV    A   A EGE+RRL S+Q  +D+ LLEVLE +PQT++GF   M  CSA+FEPE   +   G  GPL V   +R QME+ CT+PLV+D++SR+
Sbjct:  675 FPRLKESLLGAISSADNPFIPGMNLSVACTMATRRAMEGEKRRLASMQAAIDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETVISRFHGYQGPLHVVLSKRQQMETYCTIPLVLDFMSRK 796          
BLAST of mRNA_A-nodosum_M_contig106.21.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.360e-31
Identity = 64/122 (52.46%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 WPIFTESLLTEVESASNPLIPGMNLSVPLAEAAVGAREGERRRLISLQNRVDKYLLEVLERLPQTIQGFDKGMTQCSALFEPEGPRNGLCGRPGPLRVAFERRHQMESLCTVPLVMDYLSRR 366
            +P   ESLL  + SA+NP IPGMNLSV    A   A EGE+RRL S+Q  VD+ LLEVLE +PQT++GF   M  CSA+FEPE   +   G  GPL V   +R QME+ CT+PLV+D+++R+
Sbjct:  923 FPRLKESLLGAISSANNPFIPGMNLSVACTTATRRAMEGEKRRLASMQAAVDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETVISRFHGYQGPLHVVLSKREQMETYCTIPLVLDFMTRK 1044          
BLAST of mRNA_A-nodosum_M_contig106.21.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.540e-22
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    7 IFTESLLTEVESASNPLIPGMNLSVPLAEAAVGAREGERRRLISLQNRVDKYLLEVLERLPQTIQGFDK--GMTQCSALFEPEGPR--NGLCGRPGPLRVAFERRHQMESLCTVPLVMDYLS 360
            IF    L  V SA+NP +PG+ LS+ L+EAA  A EGERR L   ++ +D+ LLE+ ERLPQT++GF++  GM  C+ + EPE  R   G     GPL +      Q+E+ C VPL+MD+LS
Sbjct:  538 IFKRCCLRAVTSAANPFVPGVTLSIRLSEAAKQASEGERRALFDTKSSIDELLLEMFERLPQTVRGFEEQAGMDSCTNVLEPELMRATTGSNDLGGPLDMIISDPLQLETFCKVPLIMDFLS 659          
BLAST of mRNA_A-nodosum_M_contig106.21.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.630e-21
Identity = 55/122 (45.08%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    7 IFTESLLTEVESASNPLIPGMNLSVPLAEAAVGAREGERRRLISLQNRVDKYLLEVLERLPQTIQGFDK--GMTQCSALFEPEGPR--NGLCGRPGPLRVAFERRHQMESLCTVPLVMDYLS 360
            +F    L  V SA+NP IPG+ LS+ L EAA  A EGERR L   ++ +D+ LLE+ ERLPQT++GF++  G   C+ + EPE  R  +G     GPL +      Q+E+ C VPL+MD+LS
Sbjct:  521 VFKRCCLRAVTSAANPFIPGVTLSIRLTEAAKQASEGERRALFETKSSIDEMLLEMFERLPQTVRGFEEQAGTDSCTNVLEPELMRAQSGSNDLGGPLDMIISDPLQLETFCKVPLIMDFLS 642          
BLAST of mRNA_A-nodosum_M_contig106.21.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.210e-21
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   10 FTESLLTEVESASNPLIPGMNLSVPLAEAAVGAREGERRRLISLQNRVDKYLLEVLERLPQTIQGFDKGMTQCSALFEPEGPRNGLCGRPGPLRVAFERRHQMESLCTVPLVMDYLSRR 366
            F +  L  V SA+NP IPG+ LS+ LAEAA  A EGERR +  +Q  V+  LLEVLERLP++++ F++ M  C  +FEP+   +       PL +   R+ Q E  C VPLVMD+L R+
Sbjct:  479 FKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEPKF-LDVFEDFEKPLEMMLSRQQQRELFCNVPLVMDFLKRK 596          
BLAST of mRNA_A-nodosum_M_contig106.21.1 vs. uniprot
Match: A0A6H5KIV5_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIV5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.610e-20
Identity = 60/134 (44.78%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   25 LTEVESASNPLIPGMNLSVPLAEAAVGAREGERRRLISLQNRVDKYLLEVLERLPQTIQGFDKG------MTQCSALFEPEGPR------------NGLCGR---PGPLRVAFERRHQMESLCTVPLVMDYLSR 363
            L  V SA NPL+ GM LS+ LA+AA    EG+R+  + LQN V+  +LEV ERLPQT+ GF +G      M  CS +F PE  R            +G  G     GPL +A + RHQ+E  CT PLV+DYL+R
Sbjct:  189 LDAVCSAVNPLLVGMRLSLLLADAAGMGNEGQRQVALRLQNEVEDLVLEVFERLPQTVDGFREGDVGGSGMDACSVVFAPEKIRPRDETIPSHLFQDGTGGTRVDSGPLEMALQARHQLELFCTQPLVLDYLNR 322          
BLAST of mRNA_A-nodosum_M_contig106.21.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.180e-19
Identity = 52/122 (42.62%), Postives = 77/122 (63.11%), Query Frame = 1
Query:   10 FTESLLTEVESASNPLIPGMNLSVPLAEAAVGAREGERRRLISLQNRVDKYLLEVLERLPQTIQGFDKGMTQ-CSALFEPE--GPRNGLCGRPGPLRVAFERRHQMESLCTVPLVMDYLSRR 366
            F    L  V +A+NP +PG+ LS+ LAEAA  A EGE+R +  ++  V+  LLE+ ERLP+T++ FD+     C+ +FEP+  G  + L G   P+ +   ++ QM + C VPLVMD+LSRR
Sbjct:  189 FKNCCLRAVTTAANPFMPGLLLSIRLAEAAKEANEGEQRHIDEIRASVEALLLEIFERLPRTVRAFDEETKGGCTGMFEPQILGGHHPL-GFERPVNMILSKQEQMNTFCNVPLVMDFLSRR 309          
BLAST of mRNA_A-nodosum_M_contig106.21.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.770e-18
Identity = 49/120 (40.83%), Postives = 70/120 (58.33%), Query Frame = 1
Query:   10 FTESLLTEVESASNPLIPGMNLSVPLAEAAVGAREGERRRLISLQNRVDKYLLEVLERLPQTIQGFDKGMTQCSALFEPEG-PRNGLCGRPGPLRVAFERRHQMESLCTVPLVMDYLSRR 366
            F +  L  V SASNP IPG+ LS+ LAEAA    EGE+R +  +  RV+  LLE+LE LP++++ F++ M     +FEP   P         P+ +   RR Q E  C+ PLVMD++ R+
Sbjct:  297 FRDCCLDAVASASNPFIPGLVLSIRLAEAAEKTNEGEQRAITDVHARVNDLLLEILEGLPRSVRSFERDMDASGDMFEPASLPSKDF---ETPMEMILSRRQQTEIFCSAPLVMDFIKRK 413          
BLAST of mRNA_A-nodosum_M_contig106.21.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.200e-16
Identity = 50/119 (42.02%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   25 LTEVESASNPLIPGMNLSVPLAEAAVGAREGERRRLISLQNRVDKYLLEVLERLPQTIQGFDKGMTQCSALFEPE-----GPRNGLCGRPGPLRVAFERRHQMESLCTVPLVMDYLSRR 366
            L  V ++ N  I GM LSV   +    A EGER  L ++Q  V   LLE+LERLPQT+ GF+ GM  CSA+  PE     G   G   +P    +      Q E+ C+ PL+MDYLSR+
Sbjct:   53 LRVVAASDNLFISGMTLSVARVDVTKKAPEGERGTLEAIQGHVHALLLEILERLPQTVNGFNGGMADCSAVLGPEFDSKTGESTGF--KPPLALLLLANSIQTETFCSTPLIMDYLSRK 169          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig106.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FLB1_ECTSI8.740e-3457.89Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LT30_ECTSI2.340e-3152.46Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5LDE6_9PHAE2.360e-3152.46Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBU4_9PHAE2.540e-2245.90Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FZR6_ECTSI1.630e-2145.08Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KJG3_9PHAE2.210e-2145.38Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KIV5_9PHAE2.610e-2044.78Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
D7G6K7_ECTSI2.180e-1942.62Transient Receptor Potential Channel. C terminally... [more]
A0A6H5JG42_9PHAE3.770e-1840.83Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JCX0_9PHAE5.200e-1642.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig106contigA-nodosum_M_contig106:523673..524040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FLB1
PFAMsIon_trans
Model size370
Max annot lvl2759|Eukaryota
KEGG koko:K04981
KEGG TC1.A.4.5.8
KEGG Pathwayko04978,map04978
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.43e-34
EggNOG OGsKOG3614@1|root,KOG3614@2759|Eukaryota
EC2.7.11.1
Descriptionion channel activity
Cds size366
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866445.6710157-CDS-A-nodosum_M_contig106:523672..5240381680866445.6710157-CDS-A-nodosum_M_contig106:523672..524038Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig106 523673..524038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig106.21.1prot_A-nodosum_M_contig106.21.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig106 523673..524038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig106.21.1

>prot_A-nodosum_M_contig106.21.1 ID=prot_A-nodosum_M_contig106.21.1|Name=mRNA_A-nodosum_M_contig106.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=122bp
WPIFTESLLTEVESASNPLIPGMNLSVPLAEAAVGAREGERRRLISLQNR
VDKYLLEVLERLPQTIQGFDKGMTQCSALFEPEGPRNGLCGRPGPLRVAF
ERRHQMESLCTVPLVMDYLSRR
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mRNA from alignment at A-nodosum_M_contig106:523673..524040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig106.21.1 ID=mRNA_A-nodosum_M_contig106.21.1|Name=mRNA_A-nodosum_M_contig106.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=368bp|location=Sequence derived from alignment at A-nodosum_M_contig106:523673..524040+ (Ascophyllum nodosum dioecious)
TGGCCAATTTTCACCGAAAGCCTTCTTACTGAAGTCGAATCTGCCAGCAA TCCGTTGATCCCTGGCATGAACCTTTCGGTACCACTCGCTGAAGCCGCAG TAGGGGCACGCGAGGGGGAACGAAGGAGGCTTATATCGCTTCAGAATAGG GTGGACAAGTACCTGCTAGAGGTGCTCGAACGATTGCCTCAGACAATACA AGGGTTTGACAAAGGAATGACTCAATGTTCCGCCTTGTTCGAGCCTGAAG GACCTAGAAATGGTCTCTGTGGACGGCCTGGACCGCTTAGGGTGGCGTTT GAAAGGCGGCACCAGATGGAGAGTCTCTGCACGGTACCCCTGGTTATGGA TTACCTCTCACGTCGATT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig106:523673..524040+

>mRNA_A-nodosum_M_contig106.21.1 ID=mRNA_A-nodosum_M_contig106.21.1|Name=mRNA_A-nodosum_M_contig106.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at A-nodosum_M_contig106:523673..524040+ (Ascophyllum nodosum dioecious)
TGGCCAATTTTCACCGAAAGCCTTCTTACTGAAGTCGAATCTGCCAGCAA
TCCGTTGATCCCTGGCATGAACCTTTCGGTACCACTCGCTGAAGCCGCAG
TAGGGGCACGCGAGGGGGAACGAAGGAGGCTTATATCGCTTCAGAATAGG
GTGGACAAGTACCTGCTAGAGGTGCTCGAACGATTGCCTCAGACAATACA
AGGGTTTGACAAAGGAATGACTCAATGTTCCGCCTTGTTCGAGCCTGAAG
GACCTAGAAATGGTCTCTGTGGACGGCCTGGACCGCTTAGGGTGGCGTTT
GAAAGGCGGCACCAGATGGAGAGTCTCTGCACGGTACCCCTGGTTATGGA
TTACCTCTCACGTCGA
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