mRNA_A-nodosum_M_contig1059.4.3 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1059.4.3 vs. uniprot
Match: D7FVK5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK5_ECTSI) HSP 1 Score: 397 bits (1021), Expect = 4.150e-129 Identity = 213/323 (65.94%), Postives = 243/323 (75.23%), Query Frame = 1
Query: 277 ASPSAAAKEIPADKGTMTVGAALHHSYRVGLSGAGAMSFSVVTLMWLHTIVTYQQRHGTNFRETCKELWRAGGVGRFYRGVIPSLVVAPLCRFGDTLSNEMVLVWLKGEHARRESRIAEGQP--GG------VEVPMWVATFLGSVGAAAFHGLVVPLDTYKVILQVDGKKGLDVMKKRIAMRGPFAAYDGALAIAGGSLMGHYPWRVKVGVRTYLTYNLMEQRIPET--DDARARRARSAFIGATSSIVSATASNFFRVLKV--QSHDRPDGVSYVQSIKQIVTKDGGGARGAMGVLGRGLGGRMAGSALQGLVFNVVWQEM 1209
A+P+AA PA +T AL HS+ VGLSG GA FSV T+MWLHTI+TYQQRHGT F ETCK LWR GG RFYRGV+PSL APLCRFGDTLSNE+ +VW G+ G GG ++P+WVATFLGS+GAAAFH +VVPLDTYKVI+QVDGK+GL VMKKRIA RGP A YDGALA AGGSLMGHYPW YLTYNL+EQ +P T + R+RRARSAFIGA +SIVSA ASN FRVLKV QSHDRPDG+SY +SIKQI+ KDGGG RG +GV GRGLGGR+A S+LQGLVFN++WQEM
Sbjct: 41 AAPAAAVAPAPA----VTAREALRHSFTVGLSGGGATVFSVATMMWLHTIITYQQRHGTKFGETCKILWRQGGPRRFYRGVLPSLASAPLCRFGDTLSNELAMVWFHGQQXXXXXXXXSGTTISGGRGDRVDTKLPVWVATFLGSMGAAAFHAVVVPLDTYKVIMQVDGKEGLAVMKKRIATRGPVAVYDGALAFAGGSLMGHYPW--------YLTYNLLEQSLPRTRKGEGRSRRARSAFIGAAASIVSAAASNAFRVLKVYRQSHDRPDGLSYAKSIKQIIKKDGGGTRGVLGVFGRGLGGRVAASSLQGLVFNMIWQEM 351
BLAST of mRNA_A-nodosum_M_contig1059.4.3 vs. uniprot
Match: A0A835ZPC0_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPC0_9STRA) HSP 1 Score: 208 bits (529), Expect = 9.850e-58 Identity = 117/303 (38.61%), Postives = 171/303 (56.44%), Query Frame = 1
Query: 340 ALHHSYRVGLSGAGAMSFSVVTLMWLHTIVTYQQRHGTNFRETCKELWRAGGVGRFYRGVIPSLVVAPLCRFGDTLSNEMVLVWLKGEHARRESRIAEGQPGGVEVPMWVATFLGSVGAAAFHGLVVPLDTYKVILQVDGKKGLDVMKKRIAMRGPFAAYDGALAIAGGSLMGHYPWRVKVGVRTYLTYNLMEQRIPETDDARARRARSAFIGATSSIVSATASNFFRVLKVQSHDRPDGVSYVQSIKQIVTKDGGGARGAMGVLGRGLGGRMAGSALQGLVFNVVWQEMNVLFKED*GSPTR 1248
AL + GL+GA AM +V TLMWL T + YQ RHGT+ R L++ GG+ RFYRGV+P+LV PL RFGDT +N VL L+ + + +P+ V T S AA + +++P+DT K I+QV+GK G +KK+ GP Y GA+A + + +GHYPW + TYN +++RIP+ + AR+A IG SS+VS T SN RV+KV + V+Y+Q+ K ++ DG +G+ GRGL ++ + +QGL+F+V W+ F+E P R
Sbjct: 19 ALRKALGGGLAGASAMVMNVGTLMWLRTAMNYQYRHGTSTRAAITHLYKEGGIPRFYRGVVPALVQGPLSRFGDTAANTGVLALLESMDSTKG------------LPVGVKTLCASGAAALWRIVLMPIDTTKTIMQVEGKNGFPALKKKFKANGPSVLYHGAIAASAATFVGHYPW--------FFTYNYLQERIPKETATLRKLARNAVIGFASSLVSDTCSNSIRVIKVYKQSSTEPVTYLQAAKNVIASDG-----VLGLFGRGLKTKLIANGMQGLMFSVFWK----FFEEQFNGPAR 292
BLAST of mRNA_A-nodosum_M_contig1059.4.3 vs. uniprot
Match: D8LEK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK6_ECTSI) HSP 1 Score: 207 bits (526), Expect = 5.780e-57 Identity = 108/280 (38.57%), Postives = 166/280 (59.29%), Query Frame = 1
Query: 364 GLSGAGAMSFSVVTLMWLHTIVTYQQRHGTNFRETCKELWRAGGVGRFYRGVIPSLVVAPLCRFGDTLSNEMVLVWLKGEHARRESRIAEGQPGGVEVPMWVATFLGSVGAAAFHGLVVPLDTYKVILQVDGKKGLDVMKKRIAMRGPFAAYDGALAIAGGSLMGHYPWRVKVGVRTYLTYNLMEQRIPETDDARARRARSAFIGATSSIVSATASNFFRVLKVQSHDRPDGVSYVQSIKQIVTKDGGGARGAMGVLGRGLGGRMAGSALQGLVFNVVWQ 1203
G +GA AM +V TLMW+ T + YQ RHG + + L+ GG+GRFYRGV P+L+ P+ RFGDT +N VL ++ + + +P+ T SV AA + ++P+DT K I+QV+GK+G + K++ + GP Y GALA + +L+GHYPW + TYN +++RIP+ D + AR+ IG SS+VS T SN RV+KV +GV+YVQ+++ ++ KDG +G+ GRGL ++ + +QGL+F+V+W+
Sbjct: 27 GFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYESTKN------------LPVGAKTLCASVAAALWRIFLMPVDTTKTIMQVEGKEGFPALVKKVKVGGPTVLYHGALAASSATLVGHYPW--------FFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYVQAVRDVIAKDG-----LVGLFGRGLKTKIMANGMQGLMFSVLWK 281
BLAST of mRNA_A-nodosum_M_contig1059.4.3 vs. uniprot
Match: UPI001AE99925 (uncharacterized protein LOC121128000 n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE99925) HSP 1 Score: 194 bits (494), Expect = 6.250e-53 Identity = 110/280 (39.29%), Postives = 158/280 (56.43%), Query Frame = 1
Query: 364 GLSGAGAMSFSVVTLMWLHTIVTYQQRHGTNFRETCKELWRAGGVGRFYRGVIPSLVVAPLCRFGDTLSNEMVLVWLKGEHARRESRIAEGQPGGVEVPMWVATFLGSVGAAAFHGLVVPLDTYKVILQVDGKKGLDVMKKRIAMRGPFAAYDGALAIAGGSLMGHYPWRVKVGVRTYLTYNLMEQRIPETDDARARRARSAFIGATSSIVSATASNFFRVLKVQSHDRPDGVSYVQSIKQIVTKDGGGARGAMGVLGRGLGGRMAGSALQGLVFNVVWQ 1203
G SGA AM V TLMW+ T + YQ R+GT K L+ GG+ RFYRG +P+L PL RFGDT +N +L L+ +VP+++ T SV A + ++P+DT K LQV+G L +K +I +RGP Y G+LA A ++ GH+PW + TYN +++ IP+ D+ + AR+A IG SSIVS + SN RV+K P +SYV + IVTKDG +G+LGRGL R+ + +QGL+F+++W+
Sbjct: 26 GTSGAMAMGIQVTTLMWMRTTMNYQYRYGTTTSIALKALYADGGIRRFYRGFLPALFQGPLSRFGDTAANVGILALLEP----------------YDVPVFLKTAAASVSAGLWRIAIMPIDTTKTTLQVEGVTALPQLKDKIKVRGPLVLYHGSLAAASATMAGHFPW--------FFTYNHLQEAIPKYDETHKKLARNALIGFISSIVSDSVSNSLRVIKTTRQTFPTVISYVDVVNHIVTKDG-----VLGLLGRGLKTRIITNGVQGLMFSILWR 276
BLAST of mRNA_A-nodosum_M_contig1059.4.3 vs. uniprot
Match: A0A7S2V2G3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G3_9STRA) HSP 1 Score: 192 bits (488), Expect = 5.850e-52 Identity = 105/289 (36.33%), Postives = 163/289 (56.40%), Query Frame = 1
Query: 364 GLSGAGAMSFSVVTLMWLHTIVTYQQRHGTNFRETCKELWRAGGVGRFYRGVIPSLVVAPLCRFGDTLSNEMVLVWLKGEHARRESRIAEGQPGGVEVPMWVATFLGSVGAAAFHGLVVPLDTYKVILQVDGKKGLDVMKKRIAMRGPFAAYDGALAIAGGSLMGHYPWRVKVGVRTYLTYNLMEQRIPETDDARARRARSAFIGATSSIVSATASNFFRVLKVQSHDRPDGVSYVQSIKQIVTKDGGGARGAMGVLGRGLGGRMAGSALQGLVFNVVWQEMNVLFKED 1230
G++GA AM +V TL+WL T + YQ R+GT E K L++ GGV RFY+G +P+LV P+ RFGDT +N L + + R +P V T S AA + ++P+DT K +QV+G KG+ + + GP Y GALA + + +GHYPW + T+N++ RIP+ DD + R+AFIG +S++S T SN RV+KV P+ VSYV ++K ++ +DG G+ GRGL ++ + +QG++F+V+W+ + + +D
Sbjct: 27 GIAGAMAMGVNVTTLIWLRTTMNYQYRYGTTTTEALKALYKEGGVLRFYKGYLPALVQGPMSRFGDTAANTGTLALMDSYDSTRN------------LPAAVKTVSASATAAIWRIFLMPVDTLKTTMQVEGSKGVGQLAAKFKAGGPTVLYHGALAASTATFVGHYPW--------FTTFNILNARIPKYDDLPKKLMRNAFIGFCASLISDTCSNSIRVVKVYRQTHPEKVSYVNAVKGVIAEDG-----LAGLFGRGLKTKILANGMQGIMFSVMWRMIEDMINKD 290
BLAST of mRNA_A-nodosum_M_contig1059.4.3 vs. uniprot
Match: A0A7R9YEQ5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEQ5_9STRA) HSP 1 Score: 191 bits (485), Expect = 3.910e-51 Identity = 108/288 (37.50%), Postives = 165/288 (57.29%), Query Frame = 1
Query: 364 GLSGAGAMSFSVVTLMWLHTIVTYQQRHGTNFRETCKELWRAGGVGRFYRGVIPSLVVAPLCRFGDTLSNEMVLVWLKGEHARRESRIAEGQPGGVEVPMWVATFLGSVGAAAFHGLVVPLDTYKVILQVDGKKGLDVMKKRIAMRGPFAAYDGALAIAGGSLMGHYPWRVKVGVRTYLTYNLMEQRIPETDDARARR--ARSAFIGATSSIVSATASNFFRVLKVQSHDRPDGVSYVQSIKQIVTKDGGGARGAMGVLGRGLGGRMAGSALQGLVFNVVWQEMNVLF 1221
G +GA AM +V TLMWL T V YQ R+GT K+L+ GG+ RFYRGV+P+LV PL RFGDT +N V+V + + ++ +P V T S+ AA + ++P+DT K LQV+G++ L + K++ GP Y GALA A + +GHYPW + TYN +++ IP+ D + R+A IG SS+VS T SN RV+KV + +SY + +++++ +DG MG+ GRGL ++ + LQG++F+V+W+ ++ F
Sbjct: 57 GAAGAAAMFINVGTLMWLRTTVNYQYRYGTGTVTALKKLYAEGGIPRFYRGVLPALVQGPLSRFGDTAANTGVMVLMDSYDSTKD------------LPAVVKTGGASLAAACWRIFLMPIDTVKTTLQVEGRQALSQLFKKVGNHGPHVLYAGALAAASATFVGHYPW--------FATYNTLQETIPKPQDHETLKKFGRNAMIGFCSSVVSDTCSNSIRVVKVYKQSNAEALSYPEVVRRVIKEDG-----VMGLFGRGLQTKILSNGLQGIMFSVLWKYIDDKF 319
BLAST of mRNA_A-nodosum_M_contig1059.4.3 vs. uniprot
Match: F2USX5_SALR5 (MC family transporter n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2USX5_SALR5) HSP 1 Score: 189 bits (479), Expect = 1.010e-50 Identity = 108/288 (37.50%), Postives = 165/288 (57.29%), Query Frame = 1
Query: 364 GLSGAGAMSFSVVTLMWLHTIVTYQQRHGTNFRETCKELWRAGGVGRFYRGVIPSLVVAPLCRFGDTLSNEMVLVWLKGEHARRESRIAEGQPGGVEVPMWVATFLGSVGAAAFHGLVVPLDTYKVILQVDGKKGLDVMKKRIAMRGPFAAYDGALAIAGGSLMGHYPWRVKVGVRTYLTYNLMEQRIPETDDARARRARSAFIGATSSIVSATASNFFRVLKV--QSHDRPDGVSYVQSIKQIVTKDGGGARGAMGVLGRGLGGRMAGSALQGLVFNVVWQEMNVLF 1221
G +GA AM V TLMWL T + YQ R+GT+ K L++ GGV RFYRG+ P+L+ PL RFGDT +N +L L + R +P+ V T S AA + +++P+DT K ++QV+G G+ ++ ++ GP Y G+LA + +GH+PW + T+N + IPE +D A+ AR A IG SS++S T SN RV KV Q+H +P ++YVQ+++++++KDG G+ RGLG R+ + +QG++F VVW+ + F
Sbjct: 27 GGAGAAAMVTQVCTLMWLRTTMNYQYRYGTSTPAAIKALYKQGGVLRFYRGIGPALLQGPLSRFGDTAANTGILTLLDSYESTRS------------LPVAVKTVAASGTAALWRVVLMPIDTLKTVMQVEGHDGMTKLRAKLKAGGPRVLYHGSLAALSATFVGHFPW--------FATFNYLNATIPEAEDKWAKLARRAAIGFCSSVISDTTSNSIRVTKVTKQAHTKP--ITYVQAVREVISKDG-----VSGLFFRGLGTRLIANGMQGMMFTVVWKGLEERF 287
BLAST of mRNA_A-nodosum_M_contig1059.4.3 vs. uniprot
Match: A0A8J1ZCX4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZCX4_9DINO) HSP 1 Score: 189 bits (480), Expect = 1.060e-50 Identity = 105/280 (37.50%), Postives = 158/280 (56.43%), Query Frame = 1
Query: 364 GLSGAGAMSFSVVTLMWLHTIVTYQQRHGTNFRETCKELWRAGGVGRFYRGVIPSLVVAPLCRFGDTLSNEMVLVWLKGEHARRESRIAEGQPGGVEVPMWVATFLGSVGAAAFHGLVVPLDTYKVILQVDGKKGLDVMKKRIAMRGPFAAYDGALAIAGGSLMGHYPWRVKVGVRTYLTYNLMEQRIPETDDARARRARSAFIGATSSIVSATASNFFRVLKVQSHDRPDGVSYVQSIKQIVTKDGGGARGAMGVLGRGLGGRMAGSALQGLVFNVVWQ 1203
G++G+ AM V TLMW+ TI+ YQ R+G R+ L+ GG+ RFYRG ++ PL RFGDT +N VL L + +P V T S AA + + P+DT K I+QV+GK GLD++ + +GP + GA+A + + +GHYPW + TYN +++ IP+ D+ + AR+A IG SS++S T SN RV+K PD +SY +++K+IV KDG +G+ GRGL R+ + +QGL+F+V+W+
Sbjct: 32 GIAGSAAMVVQVSTLMWIRTIMNYQYRYGMGLRQATSTLYAEGGILRFYRGYFAAIAQGPLSRFGDTAANAGVLALLDANEST------------ASLPAAVKTVGASGMAATWRIAITPIDTVKTIMQVEGKPGLDILFAKSRAKGPTVFWHGAVAASAATFVGHYPW--------FATYNTLQEVIPQYDELPKKLARNAGIGFVSSVISDTISNSLRVVKTYRQTNPDPISYSETVKKIVDKDG-----YVGLFGRGLQTRIIANGMQGLMFSVMWR 286
BLAST of mRNA_A-nodosum_M_contig1059.4.3 vs. uniprot
Match: A0A0L0FNE2_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FNE2_9EUKA) HSP 1 Score: 187 bits (476), Expect = 3.550e-50 Identity = 103/291 (35.40%), Postives = 164/291 (56.36%), Query Frame = 1
Query: 364 GLSGAGAMSFSVVTLMWLHTIVTYQQRHGTNFRETCKELWRAGGVGRFYRGVIPSLVVAPLCRFGDTLSNEMVLVWLKGEHARRESRIAEGQPGGVEVPMWVATFLGSVGAAAFHGLVVPLDTYKVILQVDGKKGLDVMKKRIAMRGPFAAYDGALAIAGGSLMGHYPWRVKVGVRTYLTYNLMEQRIP--ETDDARARRARSAFIGATSSIVSATASNFFRVLKVQSHDRPDGVSYVQSIKQIVTKDGGGARGAMGVLGRGLGGRMAGSALQGLVFNVVWQEMNVLFKED 1230
G+ GA AM +V +LMWL T + YQ R+GT+ E K L++ GG+ RFYRG P+L PL RFGDT +N VL L +P+ V T S AA + ++P+DT K +QV+G KG+ ++ +++ GP Y GA+A +G + +GHYPW + YNL+++++P E D+ + R+A IG +S+VS T SN RV+K +SY +++K ++ +DG +G+ GRGL R+ +A+QG++F+V+W+ + + +D
Sbjct: 33 GVPGAVAMGINVTSLMWLRTTMNYQYRYGTSTTEAFKHLYKEGGIRRFYRGYGPALFQGPLSRFGDTAANAGVLALLDSYDTTSN------------LPVGVKTIFASAAAATWRVFLMPVDTLKTTMQVEGAKGVSQLRGKLSSGGPKVLYSGAIAASGATFVGHYPW--------FFVYNLLQEKLPKAEKDETLKKLGRNAVIGFCASVVSDTCSNSIRVVKTTKQTAAVQMSYPETVKMVIKQDG-----LIGLFGRGLKTRILANAMQGMLFSVLWKALEEQWNKD 298
BLAST of mRNA_A-nodosum_M_contig1059.4.3 vs. uniprot
Match: A0A2K3CTE6_CHLRE (Uncharacterized protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3CTE6_CHLRE) HSP 1 Score: 188 bits (478), Expect = 7.310e-50 Identity = 106/282 (37.59%), Postives = 158/282 (56.03%), Query Frame = 1
Query: 364 GLSGAGAMSFSVVTLMWLHTIVTYQQRHGTNFRETCKELWRAGGVGRFYRGVIPSLVVAPLCRFGDTLSNEMVLVWLKGEHARRESRIAEGQPGGVEVPMWVATFLGSVGAAAFHGLVVPLDTYKVILQVDGKKGLDVMKKRIAMRGPFAAYDGALAIAGGSLMGHYPWRVKVGVRTYLTYNLMEQRIPET--DDARARRARSAFIGATSSIVSATASNFFRVLKVQSHDRPDGVSYVQSIKQIVTKDGGGARGAMGVLGRGLGGRMAGSALQGLVFNVVWQ 1203
GL G AM+ V++LMWL T + YQ R+GT+ + L++ GGV RFYRG++P++V PL RFGDT +N L L + P +P+ V T + S A F L++P+DT K I+QV+GK + + +++A GP Y GALA A + +GHYPW + TYN + +P+ DD +A+ RSA +G SS VS SN RV+K + +SY Q + I+ KDG +G++GRGL ++ + LQG+ F++VW+
Sbjct: 43 GLPGMAAMATQVLSLMWLRTTINYQYRYGTDTTTALRTLYKEGGVRRFYRGLLPAMVQGPLSRFGDTAANAGTLSLL------------DAYPSTAGLPVGVKTLVASTAAGCFRVLLMPVDTVKTIMQVEGKDAVAALWRKVATGGPGVLYHGALASAAATFVGHYPW--------FATYNYLNAVLPKAPADDLKAKLGRSAIMGFCSSFVSDCCSNSIRVIKTTKQTTREPMSYPQVARMIIEKDG-----VLGLMGRGLKTKIIANGLQGICFSIVWR 299 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1059.4.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1059.4.3 >prot_A-nodosum_M_contig1059.4.3 ID=prot_A-nodosum_M_contig1059.4.3|Name=mRNA_A-nodosum_M_contig1059.4.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=367bp MPHTLPDGHRQQQNQQHKHQIASKMDSRESPAGTSTLPASTTIAAAEGASback to top mRNA from alignment at A-nodosum_M_contig1059:107087..120049- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1059.4.3 ID=mRNA_A-nodosum_M_contig1059.4.3|Name=mRNA_A-nodosum_M_contig1059.4.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=12963bp|location=Sequence derived from alignment at A-nodosum_M_contig1059:107087..120049- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1059:107087..120049- >mRNA_A-nodosum_M_contig1059.4.3 ID=mRNA_A-nodosum_M_contig1059.4.3|Name=mRNA_A-nodosum_M_contig1059.4.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=1101bp|location=Sequence derived from alignment at A-nodosum_M_contig1059:107087..120049- (Ascophyllum nodosum dioecious)back to top |