mRNA_A-nodosum_M_contig1058.45.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1058.45.1
Unique NamemRNA_A-nodosum_M_contig1058.45.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1058.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1058contigA-nodosum_M_contig1058:254135..254809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size218
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866440.2674623-CDS-A-nodosum_M_contig1058:254134..2541941680866440.2674623-CDS-A-nodosum_M_contig1058:254134..254194Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1058 254135..254194 -
1680866440.276065-CDS-A-nodosum_M_contig1058:254653..2548091680866440.276065-CDS-A-nodosum_M_contig1058:254653..254809Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1058 254654..254809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1058.45.1prot_A-nodosum_M_contig1058.45.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1058 254135..254809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1058.45.1

>prot_A-nodosum_M_contig1058.45.1 ID=prot_A-nodosum_M_contig1058.45.1|Name=mRNA_A-nodosum_M_contig1058.45.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=72bp
MRCSPTEVHAAVVLGSAGVFQNVSRKRTAPLHKHGMANRRYYNSTGYRVV
HIKPVAHNPADQTPPNRGGSIP
back to top

mRNA from alignment at A-nodosum_M_contig1058:254135..254809-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1058.45.1 ID=mRNA_A-nodosum_M_contig1058.45.1|Name=mRNA_A-nodosum_M_contig1058.45.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at A-nodosum_M_contig1058:254135..254809- (Ascophyllum nodosum dioecious)
ATGAGATGTAGCCCTACTGAAGTACATGCAGCAGTTGTGCTAGGTTCAGC
AGGCGTTTTTCAGAATGTGTCGAGAAAAAGAACGGCCCCGCTACACAAGC
ACGGCATGGCGAATAGGAGATACTATAATAGTACAGGCTATCGAGTAGTA
CATATTGTGAGGGCGAAAAATAGGGGGGGGGGGGGTTGTTGCGGTAGGTA
AAAATGTTACTTGGTACCCCCCAAAAGGGGCAGATAATAGTTGTGTAGGT
GCAGCAGCAAAAGGCTTCGTAGCGAAAGTAGCAGTTGCACACGCCCTGTG
TCCTCCAGACGCACCAAAAAGCTGTTTTTTGGGGGGTTTCATTTTTCTGA
AAATAAAAATTTGTTTCGGGCGGTGACGCTAAAGTACGATCAAAGTATGC
GTTTTGAAGTAGTACCACGGCAATAGAGCTTGATCGCGCCGCTATGGAGA
CAAAGGTAACGCCCTATTTATCTTTATATTCCTGTGCAGAGGGGGGGGGA
AGAGTCCGTACAAAAGTGTCGCGGGAATGACACGCGAGTTATGAGGTTTG
TTTGGTTGATTGATTCGTTACCCAAGCCCAGTGAACGCTCTACATCCCAA
GCCTGGCTTACAGAGAAGCCCGTGGCGCATAACCCCGCGGATCAAACGCC
TCCAAACCGCGGCGGCTCCATTCCC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1058:254135..254809-

>mRNA_A-nodosum_M_contig1058.45.1 ID=mRNA_A-nodosum_M_contig1058.45.1|Name=mRNA_A-nodosum_M_contig1058.45.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig1058:254135..254809- (Ascophyllum nodosum dioecious)
ATGAGATGTAGCCCTACTGAAGTACATGCAGCAGTTGTGCTAGGTTCAGC
AGGCGTTTTTCAGAATGTGTCGAGAAAAAGAACGGCCCCGCTACACAAGC
ACGGCATGGCGAATAGGAGATACTATAATAGTACAGGCTATCGAGTAGTA
CATATTAAGCCCGTGGCGCATAACCCCGCGGATCAAACGCCTCCAAACCG
CGGCGGCTCCATTCCC
back to top