mRNA_A-nodosum_M_contig1058.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1058.20.1
Unique NamemRNA_A-nodosum_M_contig1058.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1058.20.1 vs. uniprot
Match: D7FWJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWJ1_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 7.650e-31
Identity = 58/70 (82.86%), Postives = 66/70 (94.29%), Query Frame = 2 
Query:    2 SGSEDRMLDSEQEAAEIDGVDPWKAAMQGDLDALLQYIDNNGDVNQRDRENNTPLHWACQENHLDMVGVL 211
            S SE+++LDSEQE  E+DGVDPWKAAMQGDLDALLQYID+NGDVNQRDR+NNTPLHWACQE+H D+VGVL
Sbjct:    8 SASEEKILDSEQEP-EMDGVDPWKAAMQGDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVL 76
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BLAST of mRNA_A-nodosum_M_contig1058.20.1 vs. uniprot
Match: A0A836C8I0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8I0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.810e-20
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:   56 GVDPWKAAMQGDLDALLQYIDNNGDVNQRDRENNTPLHWACQENHLDMVGVL 211
            G+DPWKAA  GDLDA+L +ID  GDVN RD  NNTPLHWACQE+H D+VGVL
Sbjct:    7 GIDPWKAATAGDLDAILTFIDEGGDVNCRDANNNTPLHWACQESHFDIVGVL 58
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BLAST of mRNA_A-nodosum_M_contig1058.20.1 vs. uniprot
Match: A0A835Z0Q5_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.970e-18
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 2 
Query:   59 VDPWKAAMQGDLDALLQYIDNNGDVNQRDRENNTPLHWACQENHLDMVGVL 211
            VDPWKAA  GDLDA+L YID  GDVN RD  NNTPLHWACQE+H D+VGVL
Sbjct:    4 VDPWKAATSGDLDAILTYIDEGGDVNCRDVNNNTPLHWACQESHFDIVGVL 54
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BLAST of mRNA_A-nodosum_M_contig1058.20.1 vs. uniprot
Match: A0A2I0AVS4_9ASPA (Acyl-CoA-binding domain-containing protein 2 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AVS4_9ASPA)

HSP 1 Score: 53.5 bits (127), Expect = 6.630e-6
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 2 
Query:   74 AAMQGDLDALLQYIDNNGDVNQRDRENNTPLHWACQENHLDMVGVL 211
            +A +G++D LL++I+N   VN RD E  TPLHWA    HL++V +L
Sbjct:  242 SAREGEVDGLLKHIENGASVNARDSEGRTPLHWAVDRGHLEVVELL 287
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BLAST of mRNA_A-nodosum_M_contig1058.20.1 vs. uniprot
Match: A0A1U8AW91_NELNU (acyl-CoA-binding domain-containing protein 1 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8AW91_NELNU)

HSP 1 Score: 50.8 bits (120), Expect = 5.890e-5
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 2 
Query:   74 AAMQGDLDALLQYIDNNGDVNQRDRENNTPLHWACQENHLDMVGVL 211
            +A +G++D LL+Y+DN   V+ RD E  TPLHWA    HL++V +L
Sbjct:  252 SAREGEMDNLLKYMDNGVPVDLRDGEGRTPLHWAVDRGHLNIVELL 297
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BLAST of mRNA_A-nodosum_M_contig1058.20.1 vs. uniprot
Match: A0A843WK81_COLES (ACB domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WK81_COLES)

HSP 1 Score: 50.4 bits (119), Expect = 8.070e-5
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 2 
Query:   74 AAMQGDLDALLQYIDNNGDVNQRDRENNTPLHWACQENHLDMV 202
            +A +G+ +ALL  IDN   VN RD E  TPLHWA    HLD+V
Sbjct:  266 SAREGEANALLALIDNGVSVNLRDGEGRTPLHWAVDRGHLDVV 308
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1058.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FWJ1_ECTSI7.650e-3182.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8I0_9STRA1.810e-2073.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0Q5_9STRA1.970e-1876.47Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A2I0AVS4_9ASPA6.630e-647.83Acyl-CoA-binding domain-containing protein 2 n=1 T... [more]
A0A1U8AW91_NELNU5.890e-547.83acyl-CoA-binding domain-containing protein 1 n=1 T... [more]
A0A843WK81_COLES8.070e-553.49ACB domain-containing protein n=1 Tax=Colocasia es... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1058contigA-nodosum_M_contig1058:102022..104957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FWJ1
PFAMsAnk,Ank_2,Ank_3,Ank_4
Model size347
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.82e-29
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size327
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866441.5490818-UTR-A-nodosum_M_contig1058:102021..1020401680866441.5490818-UTR-A-nodosum_M_contig1058:102021..102040Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1058 102022..102040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866441.5618124-CDS-A-nodosum_M_contig1058:102040..1021061680866441.5618124-CDS-A-nodosum_M_contig1058:102040..102106Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1058 102041..102106 +
1680866441.5706265-CDS-A-nodosum_M_contig1058:104166..1043641680866441.5706265-CDS-A-nodosum_M_contig1058:104166..104364Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1058 104167..104364 +
1680866441.5805254-CDS-A-nodosum_M_contig1058:104894..1049571680866441.5805254-CDS-A-nodosum_M_contig1058:104894..104957Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1058 104895..104957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1058.20.1prot_A-nodosum_M_contig1058.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1058 102041..104957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1058.20.1

>prot_A-nodosum_M_contig1058.20.1 ID=prot_A-nodosum_M_contig1058.20.1|Name=mRNA_A-nodosum_M_contig1058.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=109bp
MLDSEQEAAEIDGVDPWKAAMQGDLDALLQYIDNNGDVNQRDRENNTPLH
WACQENHLDMVGVLVSRNADLDPVNDFQSTPLHYACREGNLDIVTGLINF
NANIEARNK
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mRNA from alignment at A-nodosum_M_contig1058:102022..104957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1058.20.1 ID=mRNA_A-nodosum_M_contig1058.20.1|Name=mRNA_A-nodosum_M_contig1058.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2936bp|location=Sequence derived from alignment at A-nodosum_M_contig1058:102022..104957+ (Ascophyllum nodosum dioecious)
CTCGGGCTCAGAGGACCGAATGCTTGACTCGGAGCAGGAGGCAGCAGAAA
TTGACGGCGTTGACCCTTGGAAGGCGGCAATGCAGGTACTAGTACTGCAC
TCCCAACTGTATATGACTCGCAGTTATTATCATCCAGTTATTTCAATCTT
TCTAGACTCGTATGATAGCCCAGCTGTAGTCAGCTGTACAAAGACTGCCG
ACTGCCTTCTGTTGGTTATTGAAGATTGCAGATTGCGACACACGTACTGT
ACTGTACTGCACTGTGTGAATACCAGTAAAGAAATCTTTCTTTGCAGTTT
TCGTACGGCTGGCCACCTACTTCAAGTAACTTTTTTTTCTTCAGGCGACT
GCGCTTTAACAGCTgTGCTTTTTCTCTTTTCCTTCCCTTCTTACGTATTA
GTACCAGTATAGTATTAGTATTAATAGTACTCTCTCTATTCACGCGGCTG
CTCAACCACGAGCGGGACAGGACCTGAACGACGCACACTCGGTATCCATA
GATCTCTATAAATCCAGTATGATAGTCCTGTCATACAGTAAGTACAGTAT
TAATATTTAGTTCAATTTCATCTCTCCTGCATTTTGTAAGTAATGATATT
AAATACTCCTTATTTAGTACTGTGCTACTGTGCTTGTACCGGTATGATAG
TTGAGAACACATTCATTCAAGTACTGTCAGTTGTAGGACTTTTTTTATCT
AGTGCCTAAAAAATACTGTATTGAGACTATTTACCTGGTATATTTATATG
ATAACCGCCGGTACTTTCAACATGCCCACTGCATATGATACCAATAGTGG
GTGTGGTGTGGGAAGGAGAGGCCAATGTTAATTGGTCTATGTATGGTGAC
CTTACCTGCCAAGGCAGCACTCGTTTGGAATTAATTACCTTGAGGTTTAC
TGGCCCTGTGCTGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATT
GCGTGACCCGTAAATAAACTCGGGACTGATCCGATGGCGTATGGCGGTAT
AAATGGACGCCGCGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGC
ACCAGATTCAGCCAGAGTATGTATGGAGATGAGCAGGCTGACGCGGGACG
GGACGGCTGAACCCGTCTCGCGAGACCACATTCTCAGGCACGCACGGGGA
CACGGGAATATTAATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCA
ACCTTACCCGGTCGGTTGATCCATACTCTGCTATATGTGATGACCATACA
TACATATATACATGCCTGGTACATACATTGCTGCTGATTGATGGTGGCCT
CAACGTCCTATACTGTATAGTAATAAGTTACCAATCCCACATATTAATAC
TGCAACATTGCCATCCTGTGATACCTGTGGCCGCTAAGGGTCTTCTCTCT
CTCCCCGTTACTCGAGCTACAGTACCTTATTAATAGTACCTTAGTACCTT
AGTACCTTAGTACCTTGAGGGCTACCTACCGGCCCTGTGCCGGCGGACTC
TCGGCGGTAACGCCATCGGTACGCAATTGCGTTATCCGATAAACTCGAGA
CTGACCCGATGGCGGTTGACGGTATAGCTATAGATGAACGCCGTCGCGAA
AAACGAAACCCGCGAGTGTAAGCGCCAGATTCAGCCAGAGTATCATATGG
AGAATGGGCGAGAGAGCTATTATAATGCAGGACGAGACGGCCGAACCCGT
CTCGCGAGACTAAATTCCTAGGCGCCAACGGGGACAGGGAAAAGAAGTAC
TTTCTTTCTCCGTTGAGCTGACCACAAGCAGGATTGGCAACCATTCCCCG
GTCGAGGCTCTGTCTGCTAAACGTGATTCATATTTCATATATACACATAC
TGTCTGCACTATTTATGGTATGTAATAGTATGTACTATTAATAGAGGAGG
TGATGGTGGAAGATGCCTCGCAATGTGTTTCTGCTGTGTGTCGTTGTTAA
AAAAGCATTCGAACCTACGTTCCCTTTTTGCCATTCAAGCCTATGAATAG
TTCAGGTCAGAGCAACGAAACTTGCAAGCTTTTCACCCCGTTCTTCCGAC
AAGGCTCTTGCTCTTAATCGAACCTAACGGCGAACCGTTCCGTTTGCGCC
GTGCTCGATCGCCTTCTCCATCCTTGGTTCGTGTGTTCTCCAAAGGGCGA
CCTGGATGCGTTGCTGCAGTATATCGACAACAACGGAGACGTGAATCAGC
GCGATAGGGAGAACAACACCCCTCTCCACTGGGCGTGCCAGGAGAACCAC
CTGGACATGGTCGGGGTGCTGGTGTCAAGAAATGCCGACCTCGATCCCGT
CAACGACTTCCAGTCCACCCCCTTGCACTACGCCTGCCGAGAGGTGAGGT
GACCGCGGGGGCGTTGGCTCGATGGTGTTCGGTTCGGTTCGGTTCGAGTT
TTGCACGTGCTTGGGGAGATGAGGACCACCCCTCCTATATAGCTTAGTTC
GACAAATGGGTTTATAACTTGTATTAATGGCACAATTGGCGGTACCGTCT
GTATGTATTGTTGGAAAATCGCGCGTTTGTACAGGTGTAGTTTGTAGAAC
ACTTAAGACACTTGACGCAGCAGGAGGTATTGTCCACATGTCATAGCATC
CCATAGCTATACCATCTTTCCCCGTAGTTGAAACCGGACGGTTCCTCTAC
GTGTAGCGTCTTGTCGGTCGAGTCTGGATTTGCTTTTTCTTTCGGTAGAC
GTGCAGCCATCCGCCAAACACCTTCCCTACCACAAAAACACGACCTTTAG
CCTTTACAAAGGTGTAGCGTGGCGCGTGGGGTAACGCCTCTCTACAAATC
TTTGTTCGCCTTTCGGGTAACAACACGCACGATAGACTTGTCTGATGCCA
CCGCCTCCCCAACGCTGTTCCAGGGTAACCTCGACATCGTTACGGGGCTG
ATCAACTTCAACGCCAACATAGAGGCGCGCAACAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1058:102022..104957+

>mRNA_A-nodosum_M_contig1058.20.1 ID=mRNA_A-nodosum_M_contig1058.20.1|Name=mRNA_A-nodosum_M_contig1058.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=327bp|location=Sequence derived from alignment at A-nodosum_M_contig1058:102022..104957+ (Ascophyllum nodosum dioecious)
ATGCTTGACTCGGAGCAGGAGGCAGCAGAAATTGACGGCGTTGACCCTTG
GAAGGCGGCAATGCAGGGCGACCTGGATGCGTTGCTGCAGTATATCGACA
ACAACGGAGACGTGAATCAGCGCGATAGGGAGAACAACACCCCTCTCCAC
TGGGCGTGCCAGGAGAACCACCTGGACATGGTCGGGGTGCTGGTGTCAAG
AAATGCCGACCTCGATCCCGTCAACGACTTCCAGTCCACCCCCTTGCACT
ACGCCTGCCGAGAGGGTAACCTCGACATCGTTACGGGGCTGATCAACTTC
AACGCCAACATAGAGGCGCGCAACAAG
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