mRNA_A-nodosum_M_contig10563.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10563.4.1
Unique NamemRNA_A-nodosum_M_contig10563.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10563.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10563contigA-nodosum_M_contig10563:10603..12105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1035
Hectar predicted targeting categoryother localisation
Exons2
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866439.7632077-CDS-A-nodosum_M_contig10563:10602..111451680866439.7632077-CDS-A-nodosum_M_contig10563:10602..11145Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10563 10603..11145 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866439.773045-UTR-A-nodosum_M_contig10563:11145..112501680866439.773045-UTR-A-nodosum_M_contig10563:11145..11250Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10563 11146..11250 -
1680866439.7828553-UTR-A-nodosum_M_contig10563:11719..121051680866439.7828553-UTR-A-nodosum_M_contig10563:11719..12105Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10563 11720..12105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10563.4.1prot_A-nodosum_M_contig10563.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10563 10603..11145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10563.4.1

>prot_A-nodosum_M_contig10563.4.1 ID=prot_A-nodosum_M_contig10563.4.1|Name=mRNA_A-nodosum_M_contig10563.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=181bp
MEASLKNFQVIVKNVHTFDGKNAADFIEWYEEIRITLDIYDKAAFRVLQR
DPVPSAATETRNTVNEDLYNVLFFTTKDTVCSVVRHFAGKTLDEGSGHGQ
CAWATLREKYDGCSREALGAEYAKMNSTRMSPGQDPDEFLYELDTRRERL
NACDLSEGPTDRQFEDIILQALPPEYEHICT
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mRNA from alignment at A-nodosum_M_contig10563:10603..12105-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10563.4.1 ID=mRNA_A-nodosum_M_contig10563.4.1|Name=mRNA_A-nodosum_M_contig10563.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1503bp|location=Sequence derived from alignment at A-nodosum_M_contig10563:10603..12105- (Ascophyllum nodosum dioecious)
GACGGTGGTGTCTCGTCCACCCCCTCTCATTCCTTGTCATCTAGTTTTTT
CTATTCCCTAGACTTGGGTCACAGTCGATTGTTATCGCTTTTCTTGGCCA
TTTAAGAGCCCATGTAAACATCCACATGTTTCGGTCCCGTGCACTTTGTG
CATCAATCGGTTAGCTTAACAGTGACCTGCGCCAGCCTCTACAGCCACAT
CAAGCCGTATCACCACATACGCCAAAAAGTTGCGAGCTCTTGATAATAGC
GATAGGTTAAGAGCTATCGGCTTCAGCGCGGCGCGCACATCAGGGATCTT
CGGGGAGACGTCTTGGAGGGAACCTGCAGCAGCATGCAGGGACTGTCAGC
ATCTACGGGACTCTCAAGTTTCGGAAATTTGAAAACGTGAGTTGGATTCA
AATTTCGAAACAACGACTCGGGTCTGGACTGATTATCTAGAACTGAGACT
CCTGCACTGGTATCAACTGCGAGTTGGTGTGCACCGTCGTTAGGACAGCA
ATACATCTAGACTACGCGTCGATTCATCACTAAAATTGAGGTGTTTGATT
TTTTGCATTTGCTCTTTTCACGGGTTGAGAATTTTCTTGCGGCATAACTG
CTGTGCACTTCTCAATGCGTTGAAATTGTATTACGTCCAAGTAAGCCCGC
ACCAGTCTGCAGCAACAACGGCATAATAGGTCGTGCGCGTTGTTTTGACT
CTACGATTAAATTTGCAGCACTAGCGGCACCGTCTGTGCACGCTAAGTCG
AGCCTGCACCAGTTTGCAGCATCAGCGGCACGAGGGTGCCCGTTGGTCAA
GACCATACGTGTAACAGTCTCGACGACACACGATGTGCGCGCCGGGAGAC
CACAGGCCGAGCTTTGCAAACTCGGGGTGTGTCAACAACGAGGCTGTACG
AGGAGTACAGCACTCTACAGCTACCCCCGCGTTTGCCATCGAGCGTGATG
AAGCGTCGTCATGGAGGCATCTCTCAAGAATTTTCAGGTGATCGTGAAGA
ACGTCCACACCTTCGACGGCAAGAATGCGGCTGACTTCATCGAGTGGTAC
GAGGAGATCCGCATTACCCTTGACATCTACGACAAGGCCGCTTTCCGAGT
CCTACAGCGAGACCCGGTACCATCTGCGGCGACAGAAACCCGGAACACGG
TCAACGAAGACTTGTACAACGTGCTGTTCTTCACGACGAAAGATACAGTA
TGCTCCGTTGTCCGCCACTTTGCAGGCAAGACACTCGACGAGGGCTCAGG
ACACGGACAATGCGCGTGGGCCACCCTTCGCGAGAAGTACGACGGCTGTT
CGAGGGAAGCGCTCGGAGCGGAGTACGCCAAAATGAACTCCACGCGGATG
AGTCCGGGCCAAGACCCCGACGAATTCCTGTATGAGCTCGATACTCGCCG
CGAACGCCTCAATGCGTGCGATCTCTCAGAGGGACCGACGGACCGTCAAT
TCGAGGACATCATCCTCCAAGCTCTTCCGCCGGAGTACGAGCATATCTGC
ACA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10563:10603..12105-

>mRNA_A-nodosum_M_contig10563.4.1 ID=mRNA_A-nodosum_M_contig10563.4.1|Name=mRNA_A-nodosum_M_contig10563.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig10563:10603..12105- (Ascophyllum nodosum dioecious)
ATGGAGGCATCTCTCAAGAATTTTCAGGTGATCGTGAAGAACGTCCACAC
CTTCGACGGCAAGAATGCGGCTGACTTCATCGAGTGGTACGAGGAGATCC
GCATTACCCTTGACATCTACGACAAGGCCGCTTTCCGAGTCCTACAGCGA
GACCCGGTACCATCTGCGGCGACAGAAACCCGGAACACGGTCAACGAAGA
CTTGTACAACGTGCTGTTCTTCACGACGAAAGATACAGTATGCTCCGTTG
TCCGCCACTTTGCAGGCAAGACACTCGACGAGGGCTCAGGACACGGACAA
TGCGCGTGGGCCACCCTTCGCGAGAAGTACGACGGCTGTTCGAGGGAAGC
GCTCGGAGCGGAGTACGCCAAAATGAACTCCACGCGGATGAGTCCGGGCC
AAGACCCCGACGAATTCCTGTATGAGCTCGATACTCGCCGCGAACGCCTC
AATGCGTGCGATCTCTCAGAGGGACCGACGGACCGTCAATTCGAGGACAT
CATCCTCCAAGCTCTTCCGCCGGAGTACGAGCATATCTGCACA
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