mRNA_A-nodosum_M_contig1056.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1056.20.1
Unique NamemRNA_A-nodosum_M_contig1056.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1056.20.1 vs. uniprot
Match: D7FZF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF3_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 6.320e-67
Identity = 121/199 (60.80%), Postives = 138/199 (69.35%), Query Frame = 1 
Query:  193 DGRARSVPGSVPATEVGSVETRDRGDRSELPAYGTGLS-SAARDLELSLDRRLSLWERGWRPPTLRELPRGGEGFFSGWTYFGQPERFELVKSTNRSLGPRGAALTDAELEWAVLSLEDAEERMASLQFSEAANVLENVLVRCPGLTLAYYRLGLCLLAARGAHASNQVTRLLDCAMFLEGAENPHLRAAVDLVMRMLR 786
            DG  R++     A   GS  T     RS+  A     S SAA     +   RL+ W  GWRPP LR LPRGGEGFFSGWT+ GQ ERFELVKS NRS+GP G  L+DAELEWAVL LE+AEERM+++ FS AA +LE VL RCPGLTLAYYRL LC+LAARG H S+Q   LLDCAM LEG EN HL A VDLV+R+LR
Sbjct:    8 DGTERAM-----ALSRGSQTTEGVVSRSQPQAQSDNSSGSAAGRTRTASSSRLARWGAGWRPPALRPLPRGGEGFFSGWTHLGQSERFELVKSANRSVGPDGEPLSDAELEWAVLCLEEAEERMSAMYFSTAAGILEGVLGRCPGLTLAYYRLALCVLAARGEHGSSQAKLLLDCAMSLEGVENRHLSAGVDLVLRILR 201
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BLAST of mRNA_A-nodosum_M_contig1056.20.1 vs. uniprot
Match: A0A6H5KA32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA32_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 1.260e-64
Identity = 109/152 (71.71%), Postives = 122/152 (80.26%), Query Frame = 1 
Query:  331 SLDRRLSLWERGWRPPTLRELPRGGEGFFSGWTYFGQPERFELVKSTNRSLGPRGAALTDAELEWAVLSLEDAEERMASLQFSEAANVLENVLVRCPGLTLAYYRLGLCLLAARGAHASNQVTRLLDCAMFLEGAENPHLRAAVDLVMRMLR 786
            +L+ RL  W  GWRPP LR LPRGGEGFFSGWT+ GQPERFELVKS NRS+GP G  L+D ELEWAVL LE+AEERM+++ FS AA +LE VL RCPGLTLAYYRL LC+LAARG H S Q   LLDCAM LEGAEN HL A VDLV+R+LR
Sbjct:  249 TLEDRLGRWGAGWRPPPLRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLSDPELEWAVLCLEEAEERMSAMDFSTAAGILEGVLGRCPGLTLAYYRLALCILAARGEHGSRQAKLLLDCAMSLEGAENRHLSAGVDLVLRILR 400
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BLAST of mRNA_A-nodosum_M_contig1056.20.1 vs. uniprot
Match: A0A6U0VRK9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VRK9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.010e-6
Identity = 58/181 (32.04%), Postives = 75/181 (41.44%), Query Frame = 1 
Query:  367 WRPPTLRELPRGGEGFFSGWTYFGQPERFELVKSTNR------SLGPRGAALTDAELEWAVLSLEDAEERMASLQFSEAANVLENVLVRCPGLTLAYYRLGLCLLAARGAHASNQVTRLLDCAMFLEGAENPHLRAAVDLVMRMLRND-----AIPEESWSEDHPKSLGDLRALEAALDQL 876
            W+P   R  P+        W+      RFEL +           L P   A++DA +E AVLS EDAEE M +  FSEA  V  NV    P       RL  CL A  G      V  LL  A+ +E   N HL    + ++R+LR +      + +       P  LG L A E  L  L
Sbjct:   78 WQPSERRMRPQ------EIWSPLADAARFELSEYFAACGIGLDGLPPERDAVSDALVEAAVLSSEDAEELMRAGLFSEACEVYLNVAAFAPASAFLLLRLAQCLAAIHGKGKLGHVLALLSAAVSIE-PWNKHLLQWSETLLRLLRREPLEAGVVGDALADRQDPLRLGTLPASEGMLTAL 251
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BLAST of mRNA_A-nodosum_M_contig1056.20.1 vs. uniprot
Match: A0A7S2GJR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJR6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.330e-5
Identity = 46/134 (34.33%), Postives = 64/134 (47.76%), Query Frame = 1 
Query:  226 PATEVGSVETRDRGDRSEL--PAYG-TGLSSAARDLEL------------------SLDRRLSLWERGWRPPTLRELPRGGEGFFSGWTYFGQPERFELVKSTNRSLGPRGAALTDAELEWAVLSLEDAEERMA 564
            P  +   +  RDRG    L  P  G  GL+   R +EL                   LD RL   +  ++PP L  L    + + S W++ G+ +RFELVKS+ RS    G   T++E+EW V+S E AEE MA
Sbjct:   24 PGRDAAEIPARDRGAGCRLCEPMLGDVGLAHRLRQIELLRGVVIREASVGKTPLVPPLDDRLE--DSMFQPPPLLPL-HCADKYSSQWSWVGELDRFELVKSSQRSRNIFGHRQTESEIEWIVMSHELAEELMA 154
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1056.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FZF3_ECTSI6.320e-6760.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA32_9PHAE1.260e-6471.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U0VRK9_9STRA1.010e-632.04Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2GJR6_9STRA1.330e-534.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1056contigA-nodosum_M_contig1056:175568..180831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1345
Hectar predicted targeting categoryother localisation
Exons5
Cds size324
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1056.20.1prot_A-nodosum_M_contig1056.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1056 176540..180368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866439.3843384-UTR-A-nodosum_M_contig1056:175567..1760431680866439.3843384-UTR-A-nodosum_M_contig1056:175567..176043Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1056 175568..176043 +
1680866439.3936846-UTR-A-nodosum_M_contig1056:176457..1765391680866439.3936846-UTR-A-nodosum_M_contig1056:176457..176539Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1056 176458..176539 +
1680866439.4430625-UTR-A-nodosum_M_contig1056:180368..1808311680866439.4430625-UTR-A-nodosum_M_contig1056:180368..180831Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1056 180369..180831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866439.4030874-CDS-A-nodosum_M_contig1056:176539..1765951680866439.4030874-CDS-A-nodosum_M_contig1056:176539..176595Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1056 176540..176595 +
1680866439.413302-CDS-A-nodosum_M_contig1056:176934..1771051680866439.413302-CDS-A-nodosum_M_contig1056:176934..177105Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1056 176935..177105 +
1680866439.4242573-CDS-A-nodosum_M_contig1056:178804..1788351680866439.4242573-CDS-A-nodosum_M_contig1056:178804..178835Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1056 178805..178835 +
1680866439.434614-CDS-A-nodosum_M_contig1056:180302..1803681680866439.434614-CDS-A-nodosum_M_contig1056:180302..180368Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1056 180303..180368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1056.20.1

>prot_A-nodosum_M_contig1056.20.1 ID=prot_A-nodosum_M_contig1056.20.1|Name=mRNA_A-nodosum_M_contig1056.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=108bp
MASLQFSEAANVLENVLVRCPGLTLAYYRLGLCLLAARGAHASNQVTRLL
DCAMFLEGAENPHLRAAVDLVMRMLRNDAIPEESWSEDHPKSLGDLRALE
AALDQLI*
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mRNA from alignment at A-nodosum_M_contig1056:175568..180831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1056.20.1 ID=mRNA_A-nodosum_M_contig1056.20.1|Name=mRNA_A-nodosum_M_contig1056.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5264bp|location=Sequence derived from alignment at A-nodosum_M_contig1056:175568..180831+ (Ascophyllum nodosum dioecious)
AGGCCGCTGAGGTCTCCTCTCGACGATTCTTTGGCCCTCTGGAACGAAGG
AAGAAGGGAGCGTATCGGCGAGCTTGAGGCTGGACTCCGGCAAAACGATG
CCCGACAGCGCGAAGAGGGAAACCTATCACAGGTTGCCGGGGGCACACAC
CCGCCTCATCAGCCACGTCCCTGCGCCGAAAACGCACCAAGCGACGGACG
AGCTCGCAGCGTCCCAGGATCAGTCCCTGCAACAGAGGTGGGCAGCGTCG
AGACTCGAGATCGAGGCGATCGGTCTGAACTCCCAGCTTACGGAACTGGC
TTGTCTAGCGCCGCACGCGATCTAGAGCTTTCACTCGACCGGAGGTTGAG
TCTGTGGGAAAGGGGTTGGCGTCCACCAACGCTGAGGGAGCTCCCTCGAG
GAGGGGAAGGGTTTTTCTCAGGCTGGACGTACTTCGGCCAGCCGGAGCGC
TTTGAGTTGGTGAAGAGCACGAACAGGTTTGTGCGTTAGCTCGACCGGGC
GGGGGTAGGCGCGCGCGTTTCTTTGGACAAACCACCTCTGAACCACCTCT
CATCGTGGGACAATCCCCGTCGCTGTCTTCGGGAACAATGTAATGACAGT
CGCTGCACAGCTGTATAACTCGCTTATTGGAGTACACGTACCCGTTGCTG
CCGAGCGGCACCATCTTGCGATGGACCCAGGGCTGCGTGTTGTATCGTGG
GATTCCCCCATGTTGAAGTCGAAAAGTGTATTGTGCACCACCACAAGTCC
GTTGGCTACTAATAGCAACAGAGCTGGCGAGTATGCCCTTCCTAAGGTTT
GCACCTACCCTACCCTTTGCTCGCGAATATTTTGCTGCGAGGATATGGAA
AAAAAGTATTAATAGCCTGGCATCCTTGTCTTCGGCGCAGATCTCTGGGA
CCCCGAGGTGCCGCGCTGACAGACGCGGAACTCGAGTGGGCGGTGCTTTC
CCTAGAAGACGCCGAGGAGCGCATGGCCTCGCTACAATTTTCGGAGGCGG
CGAATGTCCTAGAGAACGTCTTGGTCAGGTAATTTTTATTTTTTGTGAAA
TGTGTTAAGCATTCTGAGTTTGTGCACGCCACATTAAGTCGAGGAAGGTC
CGTGCGGTGGTCGTCGATGCGATTGTTAGGTGTTATATCTGTGACGGAGC
GACTCGTATTCATGCCTGGGATCCGTGAAAGCAAGCACCGGGTCGAATGA
CTGAGCCGGGACCGATCAAAGACTGCCCGGTCGAGACAGACACGAAATGA
CCTTGCGCCGTCGCCCGACGCCATACGTGGAAATGCTCTTTTTGCTGCAA
CCGTTTCCGACCGATCCGGAGCACCCTACCTTGCCGAACACTCAACCCTA
CCGCAACCCTACCGCAGGTGCCCTGGCTTGACGCTGGCCTACTACCGCCT
TGGCCTTTGCTTGTTGGCCGCGAGGGGTGCTCACGCTTCCAACCAGGTTA
CGCGTCTTCTCGACTGCGCGATGTTCCTAGAGGGCGCGGAAAACCCACAT
CTCCGCGCCGCTGTAGACCTGGTGATGAGGATGCTGAGGTATAGACGACC
TACCCGCTTTCAGTCTTTCTTCTCCCCCTCCCCCTTAAACGAGGGCGCGT
GTGGTTTCATATAACTATCGTATACCGAGAAAGAAACCAGATTGGGCCGT
GTCTTAAAAACCTCTCTCTAAGAAAATTGTAAAATTATAATTGTAAAAGC
ACGGCATACTATATATAAACAAAATATGCTGTGATTGTGGGTAATGCACT
CAGCGGGGACCGCCGAGAGGTTTAATTCTTATTTTTTCAATATTTTCGAA
GTCAAATTATATTGATGCATACCCAATAATTGGCTCCAAAAGTAAGAAAA
GCGCGGTGTAGATTAACAGTAACTCTTATGAAAAGCGGTACAAAAGGAGG
TACAGAAGAAGGTGGTCGACGTGGGGTAGTTCGTTGCATTCCTCCCCGAG
CGAGCCTCTATTAGAGCTCTTTTGTAGAGGTAGACCGTAAGAACGATCGG
CACGAAGAGCTCGCTGAAGTGCTTGTTCTGATCTTGCAGAGCAGATTTTA
TGTGCCCCCCGTCCCCCCCCTGCTCCCGCGCCACCGTTGGCGTTGAAGAG
AAGAGAAGAGAATGGTTTCAGAAACCTAGCACAGAACAAGACAAAAGCAA
AGTAATATAAACCACCTGGTCGTTCTCTGTACTTGTCTCTTCAGCTCTAT
AATATGCAGATGACTTTATAGCTTACAGAACAGCAGTAGCACTCGTACCT
CGTGCCCCAAAGTCACTACATACTATAATACAATACTATTACGACATAAG
AGTACTGTAAGAGTACTATTAATACTATATATTAACACTTGTCTTTACAG
TACCAGGGACGCCGCCGACACGGTTACCGTTGCTTTCTTTCTGTCTGCTG
CCATCGGTTGGAGTGGCGGCGGAAAATAGAAGATAACGCCATCGGTTGGA
ACTGTGACAATGGAACTTTCATCATAGCCATAGTCATAGTTCGGGTTAGG
GTTGAAGACCGGAAGAGTTATCGATCGCCTCAATCTCGCCTGGATTTGTT
TCTTGTATGCCTCAATCTGGTGTATCCTTTGCAAGAAAAAACCTTGAACC
GATCAGAAACCTTTCGACCATTGAGCGTTGAGCATTGCCAACGTGGTACC
AAACACGTTAATGGTAGCAATTAGGGGATAAATTATGTTAGGTCGGAAGG
TTTCAGTGCGAGAACGGGTACAAGTGTACGTGGTCAAAGACTTGAATTTC
AGTGCGCCTCGTGCGTGTATTCGAGCCATATTTATTTTTTAGAAATCTGA
ACCTCCGCCTGGGGGAATTTCCACTTCATAAGGCTTCAAGACTATACCGG
GAATAGTGACAAACAGAAGAGCCCAAACGTAGGAACAGTACCGTATCACG
AAAGCGCCGCTTTTCGATTTTCGAAGTTCGATGTGCGCACCTTCCAAATT
TCTGTTTTACGATATTCCAAAGAAAGGCTTCAAAGGCGCGGCCTTGATCT
ATGTATTACAGTTCTATTTTAAAACAATTTCTTGTCTTCAATATCTCTAC
TCCTTATTTTGTATTTTATCAATCTCCTTGCTCTACAATACTGTACACGA
CGAGTTGTCAACATCACCTGTCATGGATCCCTTCGTGGAAGTCATTATCA
AACTTATCAAACTTATTATCAAACTTATCAAACTTATCGCGGCCCAAATA
AATTGCCGTTACTGCCGTTGAATATGCTCGTCGGCAGGAACGATGCCATC
CCGGAGGAGAGTTGGTCGGTGAGTTGGTTGGAAATTGTACTGGATTATAC
AGTGCCTCATTATTACGCATGTTTCATCAATCATCGATCATCAATCATCG
ATACTGTCCGTGCGCGCGCAATTTCATTTACACTCAGCACCTACCTCCAC
CGGCCACGAAACGGCGCTTGACAACACCAGCGGAATACTCGTCTTAATAA
CTGTAGTTTGATCTTGGATCTTAATCTTGGATCTTAATCTTGGATCTTAA
TCTTGGATCCTTCCTTCCAGTGTTGTCGCGTAATTTACGTTGGCACGCCC
AATTATACTTGCACTTTTGTAATTGAAGCCTGCAAGCACGGCGATACTTT
CAACATGCCCACTTCATACCAATAGTGGGAGTGGGAAAGAGGGAGGCATA
TTCATCGGTCCATGGTGAACTGCCAAGGCAGCACTCGTTCGGAACTACCT
TGAGGTTTACTGGCCCTATGCCGGCGGACTCTCGGCAGTGAACGCCATCG
GTGACGCAATTGCGTGACCCGATAAACTCGGGACTGACCCGATGGCGCAT
GGCGGTTTAAATAAATAAATGGATGCCGCCGCGGAAATCGGGAGGGATAC
CGCGAGTAAGCACCAGATTCAGCCTCTGAGTATGGAGATAAGCAGGCTGA
CGCGGGACGAGACTACCGAACTCCTCTCGCGAGACCAAATTCTCAGGCGC
GAATGGGGACAGGGAAATGTTAATTTTCCCTGTTCAGCTGACCACGAGCA
GGATTGGCAACCTTACCCGGTTGATCCTTACTCTTGCTATATGTGATGGC
CATACATGGATAGGCTAAACATCCCACAGCACGGTCTGCGTGACGACAAT
CCGGGAAGCATCCGTCCCTGACACGGGGAGGTCTGCGAGTATTTCATCCC
GAGTTCATCGGCATCCCATATGTACCGCCGGTACTTTTAACCTACCCACT
TCATACCAATAGTGGGTGTGGGAAAGAGAGGCGCATATCATTTGGTCCAT
GGTGACTTGCCAAGGCAGCGCCCGTTTGGATCTACCTTGTGGTTTACTGG
CTCTGTGCTGGCGAACTCTCGGCATAGAACGCCATCGGTACGCAAATGCG
TGACCCGATAAACTCGACACTGACCGGATGGCATATGGCTGTTAAAATAA
AAAATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCA
AATCCAGCCTGGGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCC
GAACCCGTCTCGAGAGACCAAATTTTCAGTCGCGAACGGGGACAGGGAAA
TATTCATTTTCCCTGTTCGGCTGACCACGAGCAGGATGGGCAACCTTACC
CGGTTGATCCATACTCTCGCTATATGTGATGACCATACATGATCCGATCT
TCATAGATCAAGGACGACCTGTCTGTATCCCCGACTCTTTCCTCCGTTCA
CGCATACGCTGCTTGTCATTTAATTTGTCTCGCAGGAGGATCACCCGAAG
TCCCTTGGAGATCTCCGAGCGCTTGAGGCGGCCCTGGACCAGCTAATCTG
ACTGGCGATGGCCAAAGTTATCAGCATTTTCTTCTCGCCAGTTGTGGGGC
GGGCGTCTCTTCTGTTGCCGTACAGCCGATTTTGGGGCTTGCTCTCGAAA
CAATGCTGTTGTTTTTTTATAATCCTGGGGAGTGTGGTCGTCCATCCCGC
AGAATCCGTCGGAGTTGTGTGAAACGACAGTACAGTACATATGTTACAGT
ACTTACAATAAATCCTCTACACTATACACTATACACTATTAATAATAGTA
TTACAGATCTCTCAATTTTTCTCGTCTCCGTCTGCCCGGTTGCGCGGTGG
AGATGAAAGTGTCGTCAGGGTCACAAGGGTGTTGTTGTCATCATAATCAT
AACTAAACAATAAAATGTGATAAAGTGACTGAACTCTCTGCGTTCATCAA
ATTTGGGTGAATCCGTGGGAAGCGCGTGCATTCACCATGCCGCAGAATAC
GTAGGCGTTGGGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1056:175568..180831+

>mRNA_A-nodosum_M_contig1056.20.1 ID=mRNA_A-nodosum_M_contig1056.20.1|Name=mRNA_A-nodosum_M_contig1056.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at A-nodosum_M_contig1056:175568..180831+ (Ascophyllum nodosum dioecious)
ATGGCCTCGCTACAATTTTCGGAGGCGGCGAATGTCCTAGAGAACGTCTT
GGTCAGGTGCCCTGGCTTGACGCTGGCCTACTACCGCCTTGGCCTTTGCT
TGTTGGCCGCGAGGGGTGCTCACGCTTCCAACCAGGTTACGCGTCTTCTC
GACTGCGCGATGTTCCTAGAGGGCGCGGAAAACCCACATCTCCGCGCCGC
TGTAGACCTGGTGATGAGGATGCTGAGGAACGATGCCATCCCGGAGGAGA
GTTGGTCGGAGGATCACCCGAAGTCCCTTGGAGATCTCCGAGCGCTTGAG
GCGGCCCTGGACCAGCTAATCTGA
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