mRNA_A-nodosum_M_contig1055.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1055.5.1
Unique NamemRNA_A-nodosum_M_contig1055.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1055.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1055contigA-nodosum_M_contig1055:62388..66494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size303
Hectar predicted targeting categoryother localisation
Exons3
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866437.2480602-CDS-A-nodosum_M_contig1055:62387..624731680866437.2480602-CDS-A-nodosum_M_contig1055:62387..62473Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1055 62388..62473 +
1680866437.262455-CDS-A-nodosum_M_contig1055:64507..646101680866437.262455-CDS-A-nodosum_M_contig1055:64507..64610Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1055 64508..64610 +
1680866437.2716901-CDS-A-nodosum_M_contig1055:66380..664941680866437.2716901-CDS-A-nodosum_M_contig1055:66380..66494Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1055 66381..66494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1055.5.1prot_A-nodosum_M_contig1055.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1055 62388..66494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1055.5.1

>prot_A-nodosum_M_contig1055.5.1 ID=prot_A-nodosum_M_contig1055.5.1|Name=mRNA_A-nodosum_M_contig1055.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=101bp
MAEGGEAATAPEASASTSAEFGGFCKETRCWSLALMAVVPDTGSCTVPLH
NKESNAEQKRIIKRLPQQPVASTLRIEPTEEEIATAMKAMANEKAVGPDG
L
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mRNA from alignment at A-nodosum_M_contig1055:62388..66494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1055.5.1 ID=mRNA_A-nodosum_M_contig1055.5.1|Name=mRNA_A-nodosum_M_contig1055.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4107bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:62388..66494+ (Ascophyllum nodosum dioecious)
ATGGCTGAAGGTGGCGAAGCAGCCACGGCCCCGGAAGCCTCTGCCTCTAC
CTCTGCCGAGTTTGGAGGCTTCTGCAAAGAAACACGGTGCGATGCGATCA
CAAATCATCCCCGCGAAAAAAAAGCCAGCGCCATTACGGCGGCTCTACGA
ACGCACACCGCACGTACCCGTAACCGCTCGGCGACTATTAATAGAGATAT
GACAAGTAATAGAATGGAATACCAATAATGTAATCACGGGGTTTTCGAAC
GTCGTCATGCCTCCCGCTACCTTTGTATATCTGTGACGGGCCTCACGAAC
TCGGGTTCCTCGGCATCGTCGGCGGTCAATGCTGCGGCCGCGATGTCGAG
ATTTCTTTCGTTGAGCAAAAATACCGTTACCGTTCGAAACAGACAATATA
TATGTAACATATTATAGGTGACATTAAATTTTCCCGACGGGGTAACATAA
CAAGAACCAACACCCCCTCTTCTTGCCAAACGTTTCCCGAACATAAATAA
TACAATAAAGAGTGACTGCCGCACGGAGGATGCTCCTCTTTGTTGTTGTT
GGTCGAGTCGAGTTTGTTCCTAATAAACAACTCGATGAGGTCTCTGGACA
ATAACAAGTGTATCGCGTGACTGCCGTGCTCAATTTTATTCTAAACATTT
AACAGTAACTGCCGTCGGGAAAACAAGTAGAGGGGAGGGGGAGCGCTGTT
TTGTCCCCGCATTTGATACCAGGTATAATTAAGTTACACTCTACGCATAC
AAATATAACAACACAATTCGAGCGGTTTAAATTATACTGCATTATAGAAC
CTCGAAACGTACAGCATTCATATGCCCAAAATTGCCCAAGTAGCCCAGCT
GGAGCGCGCGCGCGGCAGTGCACTCGTTTTTTGTCTTTAGGGGTGAAACC
CGTTGACGGCGTTTTTCCAGGAGGAGGAGGGGGGAAGGGGTCGCGGATCT
GTTCGAAACGGTGCTCAAATCTAGGCTTACTTCAAAGTAATATGGGGGGG
GGGGATTTCTCAAGGTGACAGCGACAGTCGTCGAGACGAGACGGGACGTG
ACGGGACGAGACACGGCGGGGTTGGGAGTAAAAACTTTCACTCTTTCACT
CTCTTCTCAGTTCAGTTGATCGCGGTCTGTGCTGTCCTGTCCTGTCCTGT
AGGGATTGCTGAAGGCACAGCACAGCACAGCACAGCACGGTAGTATTAGT
AATAGTAGTAGTAATAGTAATGGAACCCGCCACATGTTAGTCAAGTGCAC
CTGAACCTGGCCCACGTCCGGACCAATGAAGAAACGAAATATATCCTCTC
GAATATAAAAGTTGTGGCGGTCGGTGAACCGGTGTTCGCGGGAAAGCAGA
AACGTCTGCCAGAAACGACGCGGCTCCATGGCGGAAGTGGTGACCCAGCC
GGTCACCTTGATGAGTATTTCTCCTAATAATATTATTAGAGAGATGACGG
CACGGCGAGAGATGACATAATAAGGGGTGGTGTGGGGTGCACAACTATGA
CGTGAAAGGAAGTAAAGTTCAGCAGTAATACTATTAATATTAATAGTCTA
TTAGGATCTACATCACCGACAAGGGAGACTCGAAATGTATCAATATACCG
GTACTGTATTAGTACTTGGCTGGCTATTCATTATTAATATTAATATATTA
ATAGGTGCATGGATCTTCTTTCTACTGTACCGTACCGTACCGTACCGTGC
CGTACCGTACCctctctCTCTCTCTCTCCCTCTCCCGAGCGATGTTAACG
AGATCGATGTTCTTTGTGTCTTGTGTCCCATTAATAACTCCCACACTATT
ATTAATAGTCTAATACATTTGCTCGCGACGGACAAGTATCGATGTAATAT
ACTTCGTATACATATACTAAGTTCGTATTAGACTACAGGTAATACTTTAG
ACTATCTCTCCACGTTCTCCTTAGCCAAAAAATAATCCAACCCAGGAAAG
TCCTCCAGTAAATGAAACAGTGTGCTCAAGGTCGAGTGGGGTAAAGTAAA
TTAAATTAAAGCAGCAGAACAGAGGTCATCAAGTCATGGCCACTAACCTT
CCGAGGTGGACTTGGCTTCCACCGAATCGTCGCCATCAACGTCGATCCTT
TCCGCGGTGACAAGCCCCAGGTGCTGGAGCTTGGCCTTGATGGCCGTCGT
TCCAGACACCGGCTCCTGCACCGTCCCGTTACATAATAAGGAGTCGAACG
CAGAACAGAAGCGGATTATTAAGGTAATATTATACCAGGTACTCCGTAGT
TCATTTGTATAGTCTAGTGTATAGTGTATTTAAGAAGAACGAAGTACAGT
ACTGTTAATAGTACTATTAGTCAGTACTATTAACAGTACAATATTTGCTG
CTGTTTCAAGATGCTGAACTTGAGTAACTTGAGTATCAGGTACTGTACGG
GTGGGTACAAATATAATACTATAATACATCCATCGTAGTGCTGATGCTGA
TGCTGTCGACCCGATGTAGTTACATTGGGGAACCCTTTTGATACCATGAA
GAGGTCTTGTCTCTACAGCCAATGTTCCCACCTAAACCTTTAGACACTCT
TCCACTTGAGGTGGATGCTCAGAAGGTTTAGATGCGTTCAGTTTTTTCTT
AAACAGAAGGAGTAGGGAAATACAAAAACCTGAAACTATGTAATAGTACC
AGATTCGGCGAAGGCGGAGGACAGCTCGATCGTTGACGAGCCAGGGGAGG
GCTTAACCTCTGTGCGCGAGAATCACAGGCTTGAACCGGGAGGTTTCTGA
GGGAAAAGCTGATCTCTTACCACGGTCATTTTTCTTCCTACGAGGGCCAC
ATGGAGCGGCGAACCGGCAAGATTCGTGGGGCTTTTTCAAGCATGCACAG
GGCTTTGGACGGCTGGATGCTGGCTCGCGCGCCGGCTTCACCAGCTCAAG
GCCTCCACCACCATGGACCTCGGTATTTCAATTTTCCTTATTTTTGTACG
ATGTGTGGCCTTGAGAAACTTGCAATTGATGATCAAAACTGGTTGGAACG
TATTTGTCCGATTTGTTGCTGAGAACGCTGGTCGTGGGTAGGCGACAACA
ATCCGAGTCAATCGAGGCTGCTCTCGACATGGAGTAAAGGAGGTTTGATG
AACCGTTTTGTTATTGGTCGGTGCCATCGCTTGTAGAGTCGCATAACTTT
TTGTCGCGATTTGGATCCCTGTTGGTCTTAGTTGCGGGTTGTCACCATGA
TGTGACCCGTTGACCTTGGTACATTAGTGACCACGTACAGTACCGGATTG
GCAACCACGTACATTACTGGGTTTGGTTGAGGCCCGATCGGTTAATGTGA
AGAATACAACAACAACAACAACAACAACAACTGATCAAGTACCTAAATAG
TACTGGTACAGTATATTTCAAAATAAAAATCTGAACGCGTATCTGAACCT
CCTGAGCAGTCAAAATTAAGGTTAAGGTGGGAACATTGGCTGTCAGAACG
AAGGTCTAGGCGCGTTCTGATTTTTCTTTAAAAAACTCGTCATGGTACAG
TATTAAAAGGGTTCCTCAGTGTAGTCACACAGGGCCATTGTCCGAGTATT
TTTTGCGCCCTTGCCAGTTTCTCTTTGTATGGAGAGTACGTCGTACGTTC
TTTTCTCCCCTTCCAGATGGTGTTTTTCTAGTACCTTGTGACCACGGGCA
GGATTTTTGACATCAGCTTATTAATATGTGAGAATTCAATCAATCAATCC
ATCAATCAACAGCACAATACAAGTACTTGTATCGGGGAGAAACGAGAAAC
CCACCGTGGCGTACAAAATTGCGGGCGATACTACTATATTTTACAATTAT
AATAACCCTTCTACAGTTGGTAATGTACAAACAGTAAGTGAACAATAGAA
CGTAAAGTTCAGTACTGTAAATTCTGTCGACAGTCCCACGAATGAATACC
GCACCGGCTTCGACATACAAGTACTTGTACACCTTCCGTTCGCTGCTGAA
CTCTAAATCTAAATCCGACATGCTCGATCCCGACATACCCAAGAGGCTGC
CGCAGCAACCAGTCGCGAGTACCCTCAGGATCGAGCCCACGGAGGAGGAG
ATTGCCACAGCGATGAAAGCAATGGCAAACGAGAAAGCAGTGGGGCCGGA
CGGGCTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1055:62388..66494+

>mRNA_A-nodosum_M_contig1055.5.1 ID=mRNA_A-nodosum_M_contig1055.5.1|Name=mRNA_A-nodosum_M_contig1055.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=303bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:62388..66494+ (Ascophyllum nodosum dioecious)
ATGGCTGAAGGTGGCGAAGCAGCCACGGCCCCGGAAGCCTCTGCCTCTAC
CTCTGCCGAGTTTGGAGGCTTCTGCAAAGAAACACGGTGCTGGAGCTTGG
CCTTGATGGCCGTCGTTCCAGACACCGGCTCCTGCACCGTCCCGTTACAT
AATAAGGAGTCGAACGCAGAACAGAAGCGGATTATTAAGAGGCTGCCGCA
GCAACCAGTCGCGAGTACCCTCAGGATCGAGCCCACGGAGGAGGAGATTG
CCACAGCGATGAAAGCAATGGCAAACGAGAAAGCAGTGGGGCCGGACGGG
CTT
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