mRNA_A-nodosum_M_contig1055.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1055.16.1
Unique NamemRNA_A-nodosum_M_contig1055.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1055.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1055contigA-nodosum_M_contig1055:93988..94884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size329
Hectar predicted targeting categoryother localisation
Exons2
Cds size285
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866437.36077-UTR-A-nodosum_M_contig1055:93987..940291680866437.36077-UTR-A-nodosum_M_contig1055:93987..94029Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1055 93988..94029 -
1680866437.4128962-UTR-A-nodosum_M_contig1055:94882..948841680866437.4128962-UTR-A-nodosum_M_contig1055:94882..94884Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1055 94883..94884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866437.3800297-CDS-A-nodosum_M_contig1055:94029..942391680866437.3800297-CDS-A-nodosum_M_contig1055:94029..94239Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1055 94030..94239 -
1680866437.402478-CDS-A-nodosum_M_contig1055:94807..948821680866437.402478-CDS-A-nodosum_M_contig1055:94807..94882Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1055 94808..94882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1055.16.1prot_A-nodosum_M_contig1055.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1055 94030..94882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1055.16.1

>prot_A-nodosum_M_contig1055.16.1 ID=prot_A-nodosum_M_contig1055.16.1|Name=mRNA_A-nodosum_M_contig1055.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=95bp
MDAAAELGKNPVSKHQIQPEYGDEQANTGRDCQTRLARPNSPTIVGMEKR
GAYKLVHGDLPRQQSRSTIGGEGMSHFFPCFGRWHENSPSRGYY*
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mRNA from alignment at A-nodosum_M_contig1055:93988..94884-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1055.16.1 ID=mRNA_A-nodosum_M_contig1055.16.1|Name=mRNA_A-nodosum_M_contig1055.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:93988..94884- (Ascophyllum nodosum dioecious)
AAATGGACGCCGCCGCGGAACTCGGGAAGAATCCCGTAAGTAAGCACCAG
ATTCAGCCTGAGTATGGAGATGAGCAGGCTAACACGGGACGGAACTGCCA
AAACCGTCTCGCGTGATTAAATTCACCAACAACAGTGGGTGTGGAAAAGA
GAGGCGCATATAAACTGGTCCATGGTGACCTGCCAAGGCAGCAGAGTCGT
TCAACGATTGGGGGGGGCCGGGATGTCGCATTTTTTTTCCTGTTTTGGGA
GATGGCACGAAAATAGCCCCTCCCGGGGATATTACTGACCAACCTTCTAG
TGGAATGAGTTGGATTTGGGGCAAGTTTGCCGACCATGTAGAAGATCATG
TGGTCCTATCCCCGGAAGGGACTGTTTTGGTGACCTCCCCGGGGACGCAA
TCGTCGTATCCCCACCCTCAATCATTGAACGACTCAGCATTCGTTCGAAA
CTACCTTGAGGTTTACTGGACCTGTGCCGGCGGACTCTCGGCAGTGAACG
CCATCGGTTAGCATTTCCGTGACCCGATAAACTCGGGACTGACGCGATAG
CGTATGGCGGTTTTAAATAAGTAAATGGACGCCGCCGCGGAACTCGGGAA
GAATCCCGTAAGCACCAGATTCAGCCTGAGTACGGAGATGAGCAGGCTAA
CACGGGACGGGACTGCCAAACCCGTCTCGCGAGACCAAATTCACCAACAA
TAGTGGGTATGGAAAAGAGAGGCGCATATAAACTGGTCCATGGTGACCTG
CCAAGGCAGCAGAGTCGTTCAACGATTGGGGGGGAGGGGATGTCGCATTT
TTTCCCCTGTTTTGGGAGATGGCACGAAAATAGCCCCTCCCGGGGATATT
ATTGACCAACCTTCTAGTGGAATGAGTTGGATTCGGGGCAAGTTTGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1055:93988..94884-

>mRNA_A-nodosum_M_contig1055.16.1 ID=mRNA_A-nodosum_M_contig1055.16.1|Name=mRNA_A-nodosum_M_contig1055.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=285bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:93988..94884- (Ascophyllum nodosum dioecious)
ATGGACGCCGCCGCGGAACTCGGGAAGAATCCCGTAAGTAAGCACCAGAT
TCAGCCTGAGTATGGAGATGAGCAGGCTAACACGGGACGGGACTGCCAAA
CCCGTCTCGCGAGACCAAATTCACCAACAATAGTGGGTATGGAAAAGAGA
GGCGCATATAAACTGGTCCATGGTGACCTGCCAAGGCAGCAGAGTCGTTC
AACGATTGGGGGGGAGGGGATGTCGCATTTTTTCCCCTGTTTTGGGAGAT
GGCACGAAAATAGCCCCTCCCGGGGATATTATTGA
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