mRNA_A-nodosum_M_contig1055.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1055.10.1
Unique NamemRNA_A-nodosum_M_contig1055.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1055.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1055contigA-nodosum_M_contig1055:79859..80097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size216
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size114
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866437.3011518-UTR-A-nodosum_M_contig1055:79858..799031680866437.3011518-UTR-A-nodosum_M_contig1055:79858..79903Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1055 79859..79903 -
1680866437.3289406-UTR-A-nodosum_M_contig1055:80040..800971680866437.3289406-UTR-A-nodosum_M_contig1055:80040..80097Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1055 80041..80097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866437.3100019-CDS-A-nodosum_M_contig1055:79903..799941680866437.3100019-CDS-A-nodosum_M_contig1055:79903..79994Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1055 79904..79994 -
1680866437.320554-CDS-A-nodosum_M_contig1055:80017..800401680866437.320554-CDS-A-nodosum_M_contig1055:80017..80040Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1055 80018..80040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1055.10.1prot_A-nodosum_M_contig1055.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1055 79904..80040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1055.10.1

>prot_A-nodosum_M_contig1055.10.1 ID=prot_A-nodosum_M_contig1055.10.1|Name=mRNA_A-nodosum_M_contig1055.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=38bp
MKPALTWGPGALSQEGGVRLTSLLIRRLMVCVKHVYV*
back to top

mRNA from alignment at A-nodosum_M_contig1055:79859..80097-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1055.10.1 ID=mRNA_A-nodosum_M_contig1055.10.1|Name=mRNA_A-nodosum_M_contig1055.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=239bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:79859..80097- (Ascophyllum nodosum dioecious)
CTCTTCGGTTTTCCATCCCAGAGAATGTGAAATAGGGTCTTGTTTTGGCT
GGACGCCATGAAGCCTGCGCTGACATGGGGACCCAGGGACAAGTACTTCG
CGGTCCCGGCGCGCTTTCACAGGAAGGAGGCGTTCGTCTAACTTCATTGT
TAATACGTAGGCTAATGGTGTGTGTAAAACACGTCTATGTGTAGCGCTGG
CTCGGTCAAGAGGAGAAGACCCGGTCGTGGACCGCCGCT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1055:79859..80097-

>mRNA_A-nodosum_M_contig1055.10.1 ID=mRNA_A-nodosum_M_contig1055.10.1|Name=mRNA_A-nodosum_M_contig1055.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=114bp|location=Sequence derived from alignment at A-nodosum_M_contig1055:79859..80097- (Ascophyllum nodosum dioecious)
ATGAAGCCTGCGCTGACATGGGGTCCCGGCGCGCTTTCACAGGAAGGAGG
CGTTCGTCTAACTTCATTGTTAATACGTAGGCTAATGGTGTGTGTAAAAC
ACGTCTATGTGTAG
back to top