mRNA_A-nodosum_M_contig10548.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10548.7.1
Unique NamemRNA_A-nodosum_M_contig10548.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10548.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10548contigA-nodosum_M_contig10548:8782..9656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size209
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866437.1289794-UTR-A-nodosum_M_contig10548:8781..88131680866437.1289794-UTR-A-nodosum_M_contig10548:8781..8813Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10548 8782..8813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866437.2124374-CDS-A-nodosum_M_contig10548:8813..88611680866437.2124374-CDS-A-nodosum_M_contig10548:8813..8861Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10548 8814..8861 +
1680866437.2215414-CDS-A-nodosum_M_contig10548:9527..96561680866437.2215414-CDS-A-nodosum_M_contig10548:9527..9656Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10548 9528..9656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10548.7.1prot_A-nodosum_M_contig10548.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10548 8814..9656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10548.7.1

>prot_A-nodosum_M_contig10548.7.1 ID=prot_A-nodosum_M_contig10548.7.1|Name=mRNA_A-nodosum_M_contig10548.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=59bp
MIADRALDIAVELKRKHENDETDDDDDNGETMRVQFRPLKIRRVIFDPVS
SVDGGNNEA
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mRNA from alignment at A-nodosum_M_contig10548:8782..9656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10548.7.1 ID=mRNA_A-nodosum_M_contig10548.7.1|Name=mRNA_A-nodosum_M_contig10548.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=875bp|location=Sequence derived from alignment at A-nodosum_M_contig10548:8782..9656+ (Ascophyllum nodosum dioecious)
CATACTATCTGTCCGTAGCGAACGAGAGCAGGATGATCGCTGATCGAGCC
CTGGACATCGCGGTGGAGCTCAAGCGGAAGGTAATGAACAGCGAGAAGAG
ATACATATGTAATGTAGAGAAGAGATGGGTTCGATGGTGTTCCCGACGAC
CCAACTCTTGGTCTCCGTCCAGTCAGCCTTGCTGCCTACAATAACGTTTT
CCCCTAGTATAACACAACACAAGGACAAGAAGTGTCGTCAATATTATTAT
AACTACAGTATTAATATTATTTCACTCTACTTGGCCCTTTTTACATTACA
TACCAGTATATATTATTATTATAATACGAATATTGTTTGTTCTCGTAGCC
GCCTGTGGAAATACTTGGTTGTAAGGAGAAATAATTATATTTGTGCAGTC
GTTTGATTATGGTAGTGCTCGTTCCTGGCTTTCTGGCCGCGGAGAtGTCT
CTCttTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
GATGGAAGGCGACAATGCCTTCCCACATTTGGGCAATGTCAACCTTCCAT
TCCATTCCGAGCGAGCGAGCGAGCGACCCACCCTAATGTTCAAAGCACAC
TTGCCGAGTTTCCGGTCCCATGCTTTTCAAATCGGGTACTGATCGCGTGA
AGCGCCAAAGCTCCAAGCCGTTGTGGGCGTGACTGACACATCACGCTTTG
CTCGTCCGTCCGTCTGTTCATGCTTGCACTTTTTGTTTCCCCGAAGCATG
AAAATGACGAGACGGACGACGACGACGACAACGGGGAGACGATGCGGGTG
CAGTTCCGCCCCTTAAAGATACGGAGGGTAATCTTCGACCCCGTCTCCTC
CGTAGACGGAGGAAATAATGAAGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10548:8782..9656+

>mRNA_A-nodosum_M_contig10548.7.1 ID=mRNA_A-nodosum_M_contig10548.7.1|Name=mRNA_A-nodosum_M_contig10548.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=177bp|location=Sequence derived from alignment at A-nodosum_M_contig10548:8782..9656+ (Ascophyllum nodosum dioecious)
ATGATCGCTGATCGAGCCCTGGACATCGCGGTGGAGCTCAAGCGGAAGCA
TGAAAATGACGAGACGGACGACGACGACGACAACGGGGAGACGATGCGGG
TGCAGTTCCGCCCCTTAAAGATACGGAGGGTAATCTTCGACCCCGTCTCC
TCCGTAGACGGAGGAAATAATGAAGCC
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