mRNA_A-nodosum_M_contig10548.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10548.1.1
Unique NamemRNA_A-nodosum_M_contig10548.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10548.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10548contigA-nodosum_M_contig10548:433..849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size197
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866436.9932122-CDS-A-nodosum_M_contig10548:432..4891680866436.9932122-CDS-A-nodosum_M_contig10548:432..489Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10548 433..489 +
1680866437.0039198-CDS-A-nodosum_M_contig10548:711..8491680866437.0039198-CDS-A-nodosum_M_contig10548:711..849Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10548 712..849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10548.1.1prot_A-nodosum_M_contig10548.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10548 433..849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10548.1.1

>prot_A-nodosum_M_contig10548.1.1 ID=prot_A-nodosum_M_contig10548.1.1|Name=mRNA_A-nodosum_M_contig10548.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp
MKTSLIAGYMPLVPFKISLSTFELPVVEPSHREASLKPYLDTRIEELLAD
KLDWAPPGWKSPEMC
back to top

mRNA from alignment at A-nodosum_M_contig10548:433..849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10548.1.1 ID=mRNA_A-nodosum_M_contig10548.1.1|Name=mRNA_A-nodosum_M_contig10548.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig10548:433..849+ (Ascophyllum nodosum dioecious)
ATGAAGACGTCACTCATCGCGGGCTATATGCCTTTGGTTCCCTTCAAAAT
TAGCTTGGTGAGGATTGAGGAGTGAGGAGTGAACATCGTAGATCCAAGAT
GGGGGATCGACCAGAGCGAGCCCCGGTAGCAACTCTCGAGGAGCTGGTAG
AACCTACCTTCAAGTTTTGGCGAGTCTTGCCTGGGAATCCCGTGGAACAA
TACTGACAACCATGGTACTCGTATGACATAGTATTGTCCGCTGCTATCGG
TGCGCACGTCAACCCGTGTTTTGCCTCAGAGCACGTTTGAGCTCCCGGTG
GTGGAACCTAGTCATCGGGAGGCCTCCCTGAAGCCCTACCTGGATACGCG
CATCGAAGAGCTCCTCGCGGACAAGCTCGACTGGGCTCCTCCGGGCTGGA
AGTCCCCCGAAATGTGC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10548:433..849+

>mRNA_A-nodosum_M_contig10548.1.1 ID=mRNA_A-nodosum_M_contig10548.1.1|Name=mRNA_A-nodosum_M_contig10548.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig10548:433..849+ (Ascophyllum nodosum dioecious)
ATGAAGACGTCACTCATCGCGGGCTATATGCCTTTGGTTCCCTTCAAAAT
TAGCTTGAGCACGTTTGAGCTCCCGGTGGTGGAACCTAGTCATCGGGAGG
CCTCCCTGAAGCCCTACCTGGATACGCGCATCGAAGAGCTCCTCGCGGAC
AAGCTCGACTGGGCTCCTCCGGGCTGGAAGTCCCCCGAAATGTGC
back to top