mRNA_A-nodosum_M_contig1054.6.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: D8LNC5_ECTSI (Nuclear nucleic acid-binding protein C1D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC5_ECTSI) HSP 1 Score: 239 bits (611), Expect = 1.980e-72 Identity = 121/163 (74.23%), Postives = 137/163 (84.05%), Query Frame = 3
Query: 72 MADESESKKGMESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWHNAKTTDSKEAQRRRAEAGIGRSLPAGQPENCTSPAA 560
MA SE KG+ESL NFERALGHVRNSV+PLT MSR+EVG C+S DRA LNLQVAYGV+SLFYMFL+TQGVSP+THPVK ELDRIRGYF RLK VGKPPEQRT+KVD A+RRFI+ ALSGD W NAK TD K AQ++RA AGIGR+ PAGQPE+ ++ AA
Sbjct: 1 MAGASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTDPKSAQQKRASAGIGRANPAGQPEDFSAQAA 163
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: UPI001F04DAC0 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04DAC0) HSP 1 Score: 94.4 bits (233), Expect = 3.410e-19 Identity = 50/135 (37.04%), Postives = 80/135 (59.26%), Query Frame = 3
Query: 108 SLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWH-------NAKTTDSKEAQRR 491
++ +F + G V +++PL + S DE+ + DRAKL+L V YG+ ++F+++L TQGV+P H VK ELDRI+ Y ++K V + ++ +MK+D A RRF+ AL+ + AKTT K +R
Sbjct: 18 AMKDFHHSFGSVEETLEPLLRSSNDELHEKLDVLDRAKLDLMVVYGINTMFWIYLITQGVNPKEHGVKHELDRIKNYMKKVKDVSER-KKASMKIDKDAARRFVKGALANPKASEVVSDKEKRAKTTKQKNKNKR 151
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: A0A835ZH36_9STRA (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH36_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 5.620e-19 Identity = 47/110 (42.73%), Postives = 75/110 (68.18%), Query Frame = 3
Query: 111 LNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGD 440
L N +AL ++++ ++PLT+ +R+E+ + ++ + AKLN +AYG++SL+YM LRT+G H VK ELDRI+G RL+ V P QR + V+ AA +RFI + L+G+
Sbjct: 25 LTNLHKALHNLKSKLRPLTETTREELASQVTKQEMAKLNAAMAYGISSLYYMLLRTKGCDTTDHGVKKELDRIKGAMGRLQMVKVP--QRGIVVNVAAAQRFIKHGLAGN 132
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: C1D_XENLA (Nuclear nucleic acid-binding protein C1D n=2 Tax=Xenopus TaxID=8353 RepID=C1D_XENLA) HSP 1 Score: 91.7 bits (226), Expect = 2.340e-18 Identity = 45/104 (43.27%), Postives = 70/104 (67.31%), Query Frame = 3
Query: 120 FERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNAL 431
FE ++G V ++ + +SR E+ I P ++AKL+L AY + SLF+++L TQG++P HPVK EL+RIRGY NR+K++ ++ ++D A RRFI +AL
Sbjct: 22 FENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIYLTTQGINPKEHPVKEELERIRGYMNRVKEI--TDRKKAARLDKGAARRFIKHAL 123
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: A0A2D4BWA5_PYTIN (Nuclear nucleic acid-binding protein C1D n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWA5_PYTIN) HSP 1 Score: 92.0 bits (227), Expect = 3.970e-18 Identity = 50/132 (37.88%), Postives = 84/132 (63.64%), Query Frame = 3
Query: 102 MESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPA----THPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWHNAKTTDSKEAQ 485
+E+L + ++ L V +Q L S +E A +SP ++AK+ + +AY + +L Y++L+TQGVS TH VK ELDR++G+ ++K + + T+K+D A++RFI+NALSGD+ + +AK EA+
Sbjct: 6 VEALTSVDQTLAAVEEHLQVLKNKSLEEFLAELSPIEKAKVQVSLAYSINALLYVYLKTQGVSSKDIRQTH-VKQELDRVKGFIKKIKDTEELAKGPTLKLDKEASQRFINNALSGDQVYVDAKNARDAEAK 136
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: R1DEY4_EMIHU (Nuclear nucleic acid-binding protein C1D n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEY4_EMIHU) HSP 1 Score: 91.3 bits (225), Expect = 4.870e-18 Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 3
Query: 117 NFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPE--QRTMKVDAAATRRFIDNALSG 437
NFER LG + V+ L + E+ + P + A+L+L VAY + +LFYM+L+TQG+ A HPV AEL+RI+GY +++ + E QR ++A+A +RFI +AL G
Sbjct: 25 NFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAASQEAEASQRQASLNASAAKRFIVHALGG 133
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: A0A7S3W1R2_EMIHU (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W1R2_EMIHU) HSP 1 Score: 91.3 bits (225), Expect = 6.120e-18 Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 3
Query: 117 NFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPE--QRTMKVDAAATRRFIDNALSG 437
NFER LG + V+ L + E+ + P + A+L+L VAY + +LFYM+L+TQG+ A HPV AEL+RI+GY +++ + E QR ++A+A +RFI +AL G
Sbjct: 31 NFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAASQEAEASQRQASLNASAAKRFIVHALGG 139
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: A0A2R2MU34_LINUN (Nuclear nucleic acid-binding protein C1D n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MU34_LINUN) HSP 1 Score: 91.7 bits (226), Expect = 7.800e-18 Identity = 59/178 (33.15%), Postives = 101/178 (56.74%), Query Frame = 3
Query: 105 ESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWH--NAKTTDSKEAQRRRAEAGIGRSLPAGQPENCTSPAAWKPRENPPATSGKRKHQTPAVTTG 632
+ L++F+ +L V ++++PL +EV ++P D AK+NL AY V SLF+ +L +G +P HPVK ELDRIRGY NR+K++ + +++ K+D A++RF+ +AL W +AK + K+ ++A R P + + + E+ + SGK++ +T TG
Sbjct: 18 DQLSSFDDSLTKVEDTLKPLLMTPLNEVHEKLNPLDCAKVNLVAAYAVNSLFWTYLNVRGENPKEHPVKQELDRIRGYMNRVKEIQE--KEKAPKLDKPASKRFVKSAL-----WQAAHAKASAQKDDGASTSQADTSRLQPQPKRQRLN-----EQNESSKSESGKKEKRTAKCNTG 183
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: A0A3B4A2J3_9GOBI (Nuclear nucleic acid-binding protein C1D n=2 Tax=Oxudercinae TaxID=497678 RepID=A0A3B4A2J3_9GOBI) HSP 1 Score: 89.7 bits (221), Expect = 1.480e-17 Identity = 46/126 (36.51%), Postives = 78/126 (61.90%), Query Frame = 3
Query: 105 ESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWHNAKTTDSKEA 482
E L F+ A+ V+N + L M R+++ + P D+AKL+L Y + SLF+M+L T+G++P H +K EL+RIR Y N++K++ +++ ++D A RF+ NAL ++AK + SK+A
Sbjct: 16 EQLTGFDSAVSSVKNMLDTLISMPRNDLLQKLDPLDQAKLDLMSVYTLNSLFWMYLVTRGINPRDHGIKQELERIRTYMNKVKEI--TDKKKAARLDKGAASRFLRNALYDPEEKNSAKKSASKKA 139
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: G5BNU9_HETGA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5BNU9_HETGA) HSP 1 Score: 89.0 bits (219), Expect = 1.920e-17 Identity = 45/122 (36.89%), Postives = 78/122 (63.93%), Query Frame = 3
Query: 105 ESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWHNAKTTD 470
E L+ FE ++G V ++ + +SR+++ + P ++AK++L AY +TS+F+++L T GVSP HPVK EL+RI+ Y NR+K++ +++ K+D A RF+ +AL + H AK +
Sbjct: 16 EYLSTFENSIGAVDEMLRAMMSVSRNDLLQKLDPLEQAKVDLVSAYSLTSMFWVYLTTHGVSPKEHPVKQELERIKVYMNRVKEI--TDKKKAGKLDPGAASRFVKSALGQLKPKHAAKVAN 135 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1054.6.2 >prot_A-nodosum_M_contig1054.6.2 ID=prot_A-nodosum_M_contig1054.6.2|Name=mRNA_A-nodosum_M_contig1054.6.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=263bp MADESESKKGMESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKback to top mRNA from alignment at A-nodosum_M_contig1054:98346..100605- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1054.6.2 ID=mRNA_A-nodosum_M_contig1054.6.2|Name=mRNA_A-nodosum_M_contig1054.6.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2260bp|location=Sequence derived from alignment at A-nodosum_M_contig1054:98346..100605- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1054:98346..100605- >mRNA_A-nodosum_M_contig1054.6.2 ID=mRNA_A-nodosum_M_contig1054.6.2|Name=mRNA_A-nodosum_M_contig1054.6.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=789bp|location=Sequence derived from alignment at A-nodosum_M_contig1054:98346..100605- (Ascophyllum nodosum dioecious)back to top |