mRNA_A-nodosum_M_contig1054.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1054.12.1
Unique NamemRNA_A-nodosum_M_contig1054.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1054.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1054contigA-nodosum_M_contig1054:200122..201129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size691
Hectar predicted targeting categoryother localisation
Exons2
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866435.930037-UTR-A-nodosum_M_contig1054:200121..2001911680866435.930037-UTR-A-nodosum_M_contig1054:200121..200191Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1054 200122..200191 -
1680866435.9385629-UTR-A-nodosum_M_contig1054:200508..2005121680866435.9385629-UTR-A-nodosum_M_contig1054:200508..200512Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1054 200509..200512 -
1680866435.9588742-UTR-A-nodosum_M_contig1054:201055..2011291680866435.9588742-UTR-A-nodosum_M_contig1054:201055..201129Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1054 201056..201129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866435.9500241-CDS-A-nodosum_M_contig1054:200512..2010551680866435.9500241-CDS-A-nodosum_M_contig1054:200512..201055Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1054 200513..201055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1054.12.1prot_A-nodosum_M_contig1054.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1054 200513..201055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1054.12.1

>prot_A-nodosum_M_contig1054.12.1 ID=prot_A-nodosum_M_contig1054.12.1|Name=mRNA_A-nodosum_M_contig1054.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=181bp
MVDVYRNKSRIESCGKQASFEVAGTKPVECFAQHSPDGVVDTCSRKCTSG
GCSKKPSIGVANTKMTEYCAHHTRLNCGVEGYREREVGPHNSGKKTTGNV
IPDGAKHKTRNPPPTKTSPPSDGSRGSRKRVRHPEMTPTASKRAVLRESS
GVAGTLPEIDGQKFLVKRNFSMKPEVQLSL*
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mRNA from alignment at A-nodosum_M_contig1054:200122..201129-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1054.12.1 ID=mRNA_A-nodosum_M_contig1054.12.1|Name=mRNA_A-nodosum_M_contig1054.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1008bp|location=Sequence derived from alignment at A-nodosum_M_contig1054:200122..201129- (Ascophyllum nodosum dioecious)
GCGGCAAGGGGCCGTCGTTCGAAGTGGCAGGTACAAAAACGGCGGAATAC
TGTTCGCAGCACGCCCCGGACGGGATGGTCGACGTCTACAGGAATAAGTC
CAGAATCGAAAGCTGCGGCAAGCAGGCGTCGTTCGAAGTGGCTGGTACAA
AACCTGTCGAGTGCTTTGCGCAGCACTCCCCGGACGGGGTGGTCGACACC
TGCAGCAGAAAGTGCACAAGCGGGGGCTGCAGCAAGAAGCCGTCGATTGG
AGTGGCCAACACAAAAATGACAGAGTACTGTGCACATCACACCAGGCTAA
ATTGCGGTGTCGAAGGATACAGGGAGAGAGAGGTTGGCCCACACAACTCC
GGGAAGAAAACCACTGGAAACGTAATTCCTGATGGCGCTAAACATAAAAC
CAGAAATCCTCCTCCCACCAAGACAAGCCCTCCGTCGGATGGTAGCCGGG
GATCTCGTAAGCGAGTACGACACCCAGAAATGACACCTACGGCTTCGAAG
CGAGCTGTCTTAAGGGAGTCGTCTGGAGTAGCGGGAACTTTGCCGGAAAT
CGACGGGCAAAAATTTCTCGTGAAACGAAATTTTTCCATGAAGCCGGAGG
TGCAGCTCTCGTTGTAGCCAGGTACACTATAAGTGACCGCAGGCCATATC
TGCTTAATAATGTTTTTATACTTAAGTACTATGATTCCGGCGACCGTAGC
TCATTCGTTGGCTTTTCCTCTGTTTAGATTGAATGCGTAACCCGTCTCCT
TCATGAATCTCGCGCTGTATTTCGTCTCATGGTTGTGAGTTCAGCTCAAG
GACCCCTCTTCCTTTTAGCCCCTCAAGACCTTGCAGCTGCAGCCATTCTT
TAGCGAAACAGCCATTCTTTAGCGAAACACCTTAGTCGTGCTTACCCCCA
AGACCCTGTTCTACCGTTCTCTCGTCTATCGAACTCAGGAGCTATGGTCA
AGGGCATGGTCATGATATTTATACTACTGTCGCGGAGATGCTGATGGGTC
TGGTGAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1054:200122..201129-

>mRNA_A-nodosum_M_contig1054.12.1 ID=mRNA_A-nodosum_M_contig1054.12.1|Name=mRNA_A-nodosum_M_contig1054.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig1054:200122..201129- (Ascophyllum nodosum dioecious)
ATGGTCGACGTCTACAGGAATAAGTCCAGAATCGAAAGCTGCGGCAAGCA
GGCGTCGTTCGAAGTGGCTGGTACAAAACCTGTCGAGTGCTTTGCGCAGC
ACTCCCCGGACGGGGTGGTCGACACCTGCAGCAGAAAGTGCACAAGCGGG
GGCTGCAGCAAGAAGCCGTCGATTGGAGTGGCCAACACAAAAATGACAGA
GTACTGTGCACATCACACCAGGCTAAATTGCGGTGTCGAAGGATACAGGG
AGAGAGAGGTTGGCCCACACAACTCCGGGAAGAAAACCACTGGAAACGTA
ATTCCTGATGGCGCTAAACATAAAACCAGAAATCCTCCTCCCACCAAGAC
AAGCCCTCCGTCGGATGGTAGCCGGGGATCTCGTAAGCGAGTACGACACC
CAGAAATGACACCTACGGCTTCGAAGCGAGCTGTCTTAAGGGAGTCGTCT
GGAGTAGCGGGAACTTTGCCGGAAATCGACGGGCAAAAATTTCTCGTGAA
ACGAAATTTTTCCATGAAGCCGGAGGTGCAGCTCTCGTTGTAG
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