mRNA_A-nodosum_M_contig1054.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1054.11.1
Unique NamemRNA_A-nodosum_M_contig1054.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1054.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1054contigA-nodosum_M_contig1054:199641..199975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size305
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866435.8602338-UTR-A-nodosum_M_contig1054:199640..1997361680866435.8602338-UTR-A-nodosum_M_contig1054:199640..199736Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1054 199641..199736 -
1680866435.8895395-UTR-A-nodosum_M_contig1054:199931..1999751680866435.8895395-UTR-A-nodosum_M_contig1054:199931..199975Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1054 199932..199975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866435.8698437-CDS-A-nodosum_M_contig1054:199736..1998581680866435.8698437-CDS-A-nodosum_M_contig1054:199736..199858Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1054 199737..199858 -
1680866435.8791053-CDS-A-nodosum_M_contig1054:199888..1999311680866435.8791053-CDS-A-nodosum_M_contig1054:199888..199931Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1054 199889..199931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1054.11.1prot_A-nodosum_M_contig1054.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1054 199737..199931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1054.11.1

>prot_A-nodosum_M_contig1054.11.1 ID=prot_A-nodosum_M_contig1054.11.1|Name=mRNA_A-nodosum_M_contig1054.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=55bp
MLWRMTSLTFLPSRSGRMVVADAYSSDNSLSRQLHGMKLSDEIGSHRNGR
ATMG*
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mRNA from alignment at A-nodosum_M_contig1054:199641..199975-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1054.11.1 ID=mRNA_A-nodosum_M_contig1054.11.1|Name=mRNA_A-nodosum_M_contig1054.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=335bp|location=Sequence derived from alignment at A-nodosum_M_contig1054:199641..199975- (Ascophyllum nodosum dioecious)
TAGCGACAAAGAAGTACGGGTAGGTGGCTCCGGACCTGACGAGGATGCTA
TGGAGGATGACCTCCTTAACTTTCTTGCCATCCCGATTCCGATTTCGAGG
GGGCTGAACGATTGTATCTGGTAGAATGGTCGTCGCGGATGCGTACTCGT
CGGACAATTCCTTGAGCAGGCAACTACACGGTATGAAGTTGAGCGACGAA
ATAGGCTCACATCGTAATGGTAGGGCGACAATGGGGTAATTGAATGCTTT
TGCGATAGGGGTGAATTTATTCCAATTTATACTGGCCTTATAACTCGATA
CTGTTTCCGAGGTGTTCTTATGGATACCAATCGTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1054:199641..199975-

>mRNA_A-nodosum_M_contig1054.11.1 ID=mRNA_A-nodosum_M_contig1054.11.1|Name=mRNA_A-nodosum_M_contig1054.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=165bp|location=Sequence derived from alignment at A-nodosum_M_contig1054:199641..199975- (Ascophyllum nodosum dioecious)
ATGCTATGGAGGATGACCTCCTTAACTTTCTTGCCATCCCGATCTGGTAG
AATGGTCGTCGCGGATGCGTACTCGTCGGACAATTCCTTGAGCAGGCAAC
TACACGGTATGAAGTTGAGCGACGAAATAGGCTCACATCGTAATGGTAGG
GCGACAATGGGGTAA
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