mRNA_A-nodosum_M_contig1054.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1054.1.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 140 bits (354), Expect = 2.440e-35 Identity = 70/179 (39.11%), Postives = 111/179 (62.01%), Query Frame = 1
Query: 10 YTDCAFERDWHKEILEMNQMAFVKNMVEQYNISATSNIPKTSGVDLEPRKNGEPGGNEEFPKYRALVRSLMWLSVMTRPDIANALRACARHSHNPSPRHRKALLQVIAYVNVTKEIGLRFVRGSGLRLSVYADAVCTAASNDRRSLSGVAVMLGDTAIGWKSSTQKYVTTATCEAEHVA 546
Y CA ERD ++Q A++ +++++ I+ T++ P DL P+++ EPG ++ R + LMW + TRPDIA AL A R++H P+ R KAL+Q+++Y+N T ++G+ +VRGSGL L VY DA RRS++G+AV +G T + S TQ+ V+ +T EAE++A
Sbjct: 1520 YDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPV---RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIA 1695
BLAST of mRNA_A-nodosum_M_contig1054.1.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 139 bits (350), Expect = 8.140e-35 Identity = 69/179 (38.55%), Postives = 111/179 (62.01%), Query Frame = 1
Query: 10 YTDCAFERDWHKEILEMNQMAFVKNMVEQYNISATSNIPKTSGVDLEPRKNGEPGGNEEFPKYRALVRSLMWLSVMTRPDIANALRACARHSHNPSPRHRKALLQVIAYVNVTKEIGLRFVRGSGLRLSVYADAVCTAASNDRRSLSGVAVMLGDTAIGWKSSTQKYVTTATCEAEHVA 546
Y CA ERD ++Q A++ +++++ I+ T++ P +L P+++ EPG ++ R + LMW + TRPDIA AL A R++H P+ R KAL+Q+++Y+N T ++G+ +VRGSGL L VY DA RRS++G+AV +G T + S TQ+ V+ +T EAE++A
Sbjct: 967 YDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPV---RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIA 1142
BLAST of mRNA_A-nodosum_M_contig1054.1.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE) HSP 1 Score: 128 bits (322), Expect = 2.350e-32 Identity = 69/185 (37.30%), Postives = 114/185 (61.62%), Query Frame = 1
Query: 1 LKMYTDCAFERDWHKEILEMNQMAFVKNMVEQYNISATSNIPKTSGVDLEPRKNGEPGGNEEFPKYRALVRSLMWLSVMTRPDIANALRACARHSHNPSPRHRKALLQVIAYVNVTKEIGLRFVRGSGLRLS--VYADAVCTAASNDRRSLSGVAVMLGDTAIGWKSSTQKYVTTATCEAEHVAL 549
++ + CAF RD +EM+Q +++++++E++N+ TS+IP + D + E G + P +R +V SLMW++ TRPDI+NA+RA ARHSH P H KA +++ Y+ + L++ + + + + VY DA + + DRRS+SG V++ D + W S TQK VT +T EAE+VA+
Sbjct: 92 IRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYKSVMEDE--GARDVP-FREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHGKAAQKILNYLLEAAHLTLKYKQDTMVDVGTLVYVDADFASKATDRRSVSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAM 273
BLAST of mRNA_A-nodosum_M_contig1054.1.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE) HSP 1 Score: 129 bits (323), Expect = 2.390e-32 Identity = 70/185 (37.84%), Postives = 111/185 (60.00%), Query Frame = 1
Query: 1 LKMYTDCAFERDWHKEILEMNQMAFVKNMVEQYNISATSNIPKTSGVDLEPRKNGEPGGNEEFPKYRALVRSLMWLSVMTRPDIANALRACARHSHNPSPRHRKALLQVIAYVNVTKEIGLRFVRGSGLRLS--VYADAVCTAASNDRRSLSGVAVMLGDTAIGWKSSTQKYVTTATCEAEHVAL 549
++ + CAF RD +EM+Q +++++++E++N+ TS+IP + D E G+ F R +V SLMW++ TRPDI+NA+RA ARHSH P H KA +++ Y+ T + L+F + S VY DA + +NDRRS+SG V++ + W S TQK V+ +T EAE++A+
Sbjct: 210 VRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPF---REVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDKSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAM 391
BLAST of mRNA_A-nodosum_M_contig1054.1.1 vs. uniprot
Match: A0A6H5JSU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU5_9PHAE) HSP 1 Score: 131 bits (330), Expect = 3.220e-32 Identity = 68/179 (37.99%), Postives = 117/179 (65.36%), Query Frame = 1
Query: 10 YTDCAFERDWHKEILEMNQMAFVKNMVEQYNISATSNIPKTSGVDLEPRKNGEPGGNEEFPKYRALVRSLMWLSVMTRPDIANALRACARHSHNPSPRHRKALLQVIAYVNVTKEIGLRFVRGSGLRLSVYADAVCTAASNDRRSLSGVAVMLGDTAIGWKSSTQKYVTTATCEAEHVA 546
+ CA ERD L ++Q A++ +MV+++++ +TS IP + VDL P ++ E GG + P R + S+M +S +RPD++ A+RA A H+H P+ RH A+ +++ Y+ T+++G+ + RGSGL L+VY DA A + +RRS+SG+A M+G T + S T+ V+ ++ EA+++A
Sbjct: 453 FDGCATERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPASPSVDLGPERDDEKGG--KCP-VREAIGSMMCVSTFSRPDVSFAVRAVACHAHAPAKRHWDAIQKILGYLKETRDVGITYKRGSGLELAVYVDA-SYADTENRRSVSGLATMVGGTVVSHGSKTKSIVSLSSTEAKYIA 627
BLAST of mRNA_A-nodosum_M_contig1054.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.440e-31 Identity = 70/185 (37.84%), Postives = 112/185 (60.54%), Query Frame = 1
Query: 1 LKMYTDCAFERDWHKEILEMNQMAFVKNMVEQYNISATSNIPKTSGVDLEPRKNGEPGGNEEFPKYRALVRSLMWLSVMTRPDIANALRACARHSHNPSPRHRKALLQVIAYVNVTKEIGLRFVRGSGLRLS--VYADAVCTAASNDRRSLSGVAVMLGDTAIGWKSSTQKYVTTATCEAEHVAL 549
++ + CAF RD +EM+Q +++++++E++N+ TS+IP + D E G+ F R +V SLMW++ TRPDI+NA+RA ARHSH P H KA +++ Y+ T + L+F + + S VY DA + +NDRRS+SG V++ + W S TQK V+ +T EAE++A+
Sbjct: 676 VRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPF---REVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAM 857
BLAST of mRNA_A-nodosum_M_contig1054.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.530e-31 Identity = 70/185 (37.84%), Postives = 112/185 (60.54%), Query Frame = 1
Query: 1 LKMYTDCAFERDWHKEILEMNQMAFVKNMVEQYNISATSNIPKTSGVDLEPRKNGEPGGNEEFPKYRALVRSLMWLSVMTRPDIANALRACARHSHNPSPRHRKALLQVIAYVNVTKEIGLRFVRGSGLRLS--VYADAVCTAASNDRRSLSGVAVMLGDTAIGWKSSTQKYVTTATCEAEHVAL 549
++ + CAF RD +EM+Q +++++++E++N+ TS+IP + D E G+ F R +V SLMW++ TRPDI+NA+RA ARHSH P H KA +++ Y+ T + L+F + + S VY DA + +NDRRS+SG V++ + W S TQK V+ +T EAE++A+
Sbjct: 943 VRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPF---REVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAM 1124
BLAST of mRNA_A-nodosum_M_contig1054.1.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE) HSP 1 Score: 128 bits (321), Expect = 4.770e-31 Identity = 70/185 (37.84%), Postives = 113/185 (61.08%), Query Frame = 1
Query: 1 LKMYTDCAFERDWHKEILEMNQMAFVKNMVEQYNISATSNIPKTSGVDLEPRKNGEPGGNEEFPKYRALVRSLMWLSVMTRPDIANALRACARHSHNPSPRHRKALLQVIAYVNVTKEIGLRFVRGSGLRLS--VYADAVCTAASNDRRSLSGVAVMLGDTAIGWKSSTQKYVTTATCEAEHVAL 549
++ + CAF RD +EM+Q +++++++E++N+ TS+IP + D E G+ F R +V SLMW++ TRPDI+NA+RA ARHSH P+ H KA +++ Y+ T + L++ + + + + VY DA + + DRRS SG V++ D + W S TQK VT +T EAE+VA+
Sbjct: 377 VRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYRSVIEDEGAGDVPF---RDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAM 558
BLAST of mRNA_A-nodosum_M_contig1054.1.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.510e-29 Identity = 73/185 (39.46%), Postives = 107/185 (57.84%), Query Frame = 1
Query: 1 LKMYTDCAFERDWHKEILEMNQMAFVKNMVEQYNISATSNIPKTSGVDLEPRKNGEPGGNEEFPKYRALVRSLMWLSVMTRPDIANALRACARHSHNPSPRHRKALLQVIAYVNVTKEIGLRFVRG--SGLRLSVYADAVCTAASNDRRSLSGVAVMLGDTAIGWKSSTQKYVTTATCEAEHVAL 549
L+ Y+ C +ERD L ++Q + K + E++ + IP + L EP + E+P +RAL+ SL+W++++TRPDIANA+RA AR+ P H +A L ++ Y T G+ F RG SG L +ADA + + DRRS+SG VM AI W S TQK VT +T +AE+VA+
Sbjct: 101 LQWYSGCYYERDREAGRLTISQETYTKELGERHGVEWGGGIPLPTTWRLWDSDVNEP--SVEYP-FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAM 282
BLAST of mRNA_A-nodosum_M_contig1054.1.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 123 bits (308), Expect = 3.270e-29 Identity = 74/185 (40.00%), Postives = 107/185 (57.84%), Query Frame = 1
Query: 1 LKMYTDCAFERDWHKEILEMNQMAFVKNMVEQYNISATSNIPKTSGVDLEPRKNGEPGGNEEFPKYRALVRSLMWLSVMTRPDIANALRACARHSHNPSPRHRKALLQVIAYVNVTKEIGLRFVRG--SGLRLSVYADAVCTAASNDRRSLSGVAVMLGDTAIGWKSSTQKYVTTATCEAEHVAL 549
L+ Y+ C +ERD L ++Q + K + E+Y + IP + L EP + E+P +RAL+ SL+W++++TRPDIANA+RA AR+ P H +A L ++ Y T G+ F RG SG L +ADA + + DRRS+SG VM AI W S TQK VT +T +AE+VA+
Sbjct: 405 LQWYSGCYYERDREAGRLTISQETYTKELGERYGVEWGGGIPLPTTWRLWDSDVNEP--SVEYP-FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAM 586 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1054.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1054.1.1 >prot_A-nodosum_M_contig1054.1.1 ID=prot_A-nodosum_M_contig1054.1.1|Name=mRNA_A-nodosum_M_contig1054.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=181bp MYTDCAFERDWHKEILEMNQMAFVKNMVEQYNISATSNIPKTSGVDLEPRback to top mRNA from alignment at A-nodosum_M_contig1054:32094..32642+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1054.1.1 ID=mRNA_A-nodosum_M_contig1054.1.1|Name=mRNA_A-nodosum_M_contig1054.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=549bp|location=Sequence derived from alignment at A-nodosum_M_contig1054:32094..32642+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1054:32094..32642+ >mRNA_A-nodosum_M_contig1054.1.1 ID=mRNA_A-nodosum_M_contig1054.1.1|Name=mRNA_A-nodosum_M_contig1054.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig1054:32094..32642+ (Ascophyllum nodosum dioecious)back to top |