mRNA_A-nodosum_M_contig10534.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10534.1.1
Unique NamemRNA_A-nodosum_M_contig10534.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10534.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10534contigA-nodosum_M_contig10534:3107..6843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size562
Hectar predicted targeting categoryother localisation
Exons5
Cds size225
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10534.1.1prot_A-nodosum_M_contig10534.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10534 3107..4137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866435.7803223-CDS-A-nodosum_M_contig10534:3106..32241680866435.7803223-CDS-A-nodosum_M_contig10534:3106..3224Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10534 3107..3224 -
1680866435.792938-CDS-A-nodosum_M_contig10534:4030..41371680866435.792938-CDS-A-nodosum_M_contig10534:4030..4137Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10534 4031..4137 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866435.801478-UTR-A-nodosum_M_contig10534:4137..41581680866435.801478-UTR-A-nodosum_M_contig10534:4137..4158Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10534 4138..4158 -
1680866435.8102756-UTR-A-nodosum_M_contig10534:4298..44271680866435.8102756-UTR-A-nodosum_M_contig10534:4298..4427Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10534 4299..4427 -
1680866435.8185542-UTR-A-nodosum_M_contig10534:5971..60981680866435.8185542-UTR-A-nodosum_M_contig10534:5971..6098Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10534 5972..6098 -
1680866435.827064-UTR-A-nodosum_M_contig10534:6783..68431680866435.827064-UTR-A-nodosum_M_contig10534:6783..6843Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10534 6784..6843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10534.1.1

>prot_A-nodosum_M_contig10534.1.1 ID=prot_A-nodosum_M_contig10534.1.1|Name=mRNA_A-nodosum_M_contig10534.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
MGVERAQDLFPTLGYVEDLLAPDLRWNPAGSAHPNRTRLWALNNGGHGDC
VFHSVAWALWGRDDPDDVSGDCVD*
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mRNA from alignment at A-nodosum_M_contig10534:3107..6843-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10534.1.1 ID=mRNA_A-nodosum_M_contig10534.1.1|Name=mRNA_A-nodosum_M_contig10534.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3737bp|location=Sequence derived from alignment at A-nodosum_M_contig10534:3107..6843- (Ascophyllum nodosum dioecious)
GTCAGCATTAGAAGCCTGCATATCGGCGAATTTTTAACATCGCGGGACAG
CTTCCTGAAGGTTTAATTATATGCGGCCGAAGGCCGCGAAATATTACAAA
TTACAACACTCCTAGATCGAACGGCTGATACTGTACTAGCTACTGCTTCC
CATCGAGATACATTTAACACTTTGTGGGCTTCAGCCGACGCACAGACCCA
CACTCGCAGGTGTACTCCTGCAAAGCTGCCTCATTGTAGTATCGCTGCTA
GCTAGGTGGTGCGTGGAACAGCGGCACAGCATCGTCAGACGTCAAGTAGT
GCAGCAAAGCGATTTTTGAAAACACGTACAGTATTCAAAATAACCTACAG
TACTGTAATAATATCAGAGTCAGTTCATTAGTACTGAATGTGAAGTTGTT
GTGTACAGATGGTACAGAGGTAGTACAGTAGTATGTAGTGGTATTATAGT
ATAAACCCGGAATATGGCGAAACACAATTTGTGCTATAATACCGTAGTAC
ATTGTCAGGCGACCCACCAGAGCCAGCATGGCTTTTATCGTGGGCAGCTA
ACACACATCTGCAGTTGTGGCTGTAGAGACGTGGATTTTGTGTGCAGCAA
TGCACGTTCGGCTCATTCCTTTACAGCCGTCGCCTTTCGTGAAATATCAA
GCACAGCCCGGAGGAAATTACTGCTGGTCATTGAGATATGAGATACATAT
GACTCTGTGGGCTTCAGGCGACGCACAGATCAACAATCGTCGCAGGTTTA
CTACGGCAGAGCTGCCTTATCAAAGTATCGCTGCTAGGTGGTGTGTGGAT
GACCAAACAGTGGCTCACTCCTCGAGGCCGGTGGCGCATCCTTCTCGAAC
TTCGTGAAAATAGAGGATTTCGGTGGGTTATCGGTAGGTACATGCCTCAT
GAATTTGGGATTTTGAGGAGCCCCTAAATCTGGTGGGCGAGGTTGACGGT
GGCCAACCGATGGCCCACTTCTGGCACCAGGAGTACGATTTAGTCCTCGC
CCCTGAAGGCCTGCCTGCCTCCAGAAGGTCGCATCTTTCGTCGTGTGTGT
TGTCTTTTAAAGAAAAATCAGAACGCGCCTAGACCTTCTGATATGATCCT
TTGTCTGGACTGTCGTCGCATCGCTTTGATTGGTACATGCCTATTGAAAT
TAAGAATTTTGATTGGTACATGCCTATTGAATTTAGGGATTTTGATTGGT
ACATCCCTATTGAAACCTGTCCCGCTCACATTTGAACTCGCCCTGCATAT
CCGGCTGTGAAAGCATACTGAGCGCTGCGAGTTGTCAGGCAGGGGGATTG
AAGATCGGAAATAATTGTCAGAATTTGAAACCTGCATATATTCGGCTGCG
AAAGCATGCTCAATTATATAGTCTACCACCTCTGTTATGCTCATGATCGT
ACTGTGCTGTTGTAGCTATAAATATGTGAATGTTCTCTCATTATACTCCC
CTTAACACCAACACTCCTGAACTACAGTTAATAAAAATTATGAACGTTTG
ATTTTTCTTAAACGCGGGACATCATGTCCCTCTATTTAACAATATTTTAT
CGAAAAATAGTCTTCTTTTCCTGCTTCAACCGGGTGGTCTGGACCTATCT
ATCCCTTCTACTGTACTGTACTGTAAGGCTCTTTCTTCTGTTTACTCATT
CGTGGTAGTTAGCTGTATTAATGTATTACTTGTACCTACCAGGTATAATT
TGTTGCAGTTAATAGTTTCATGACTTACCCCTGTACCTACGTATATATTC
TACAGTACGATAGACTCCGTTTCACCAATATCTGGACCCGATCCCAAACC
CAATATACTGTAAAATAATGGAGTTATATCTAGTTTCACCGTGTGCTTTT
GCCTCTGTTTTGGTGGACTTGCCGGGTGATTGACGGTGGGTTTCCTCGCG
ATATTACGGCGTTGACCTTATACAGTACTGTATCGTTGGAGAACCCGATT
AAATCCCATCAAAAGAGTTTTCGTCCTTACAGCATTTTGTTCCCATTTAC
CTACCAGGTATTTATTACTGTATAAACGTTTTGACAGTTTTCCCCCCTGG
CTATTAATAGGTGGATGCTCAGAACGTTAGGTTTAGGTGCGTTCAGATTT
TTGTGTAAAGAGAAGAGAAGAGAAGGGAAGAGAACTGCGCTTCACTTGTA
GACTAGACTATTAGTAGACTAGACTAGACTAGGCTCTACGGGAGGGGCAC
AGCACAAAACGTTCACTGTTCACTGTTCACTGTGTTGGCGTTTTTTGCGT
TTTTCGCGCCCGCCCGCCCGCGGAAGAAAATTCGTGCAAGTTTGTACCTA
GTTTCACCCGTAGAGTAGCGCTCTCTAGACAACACGCGCCGCCGGTTCTT
ACCTGGGAGAAGACATCTCTGAAGCGTCAAAACTGTGCTTTGCTTGCTCG
TGTCACGTCTGCGCAGGCGCATAAGGGCGAGGATATTGCGCAGGTGATCC
TGGCGCAGCTGGAGAAAGCGCGCGCTTCGAGGGAGCACGTGGACACGCCG
CTCCTGAAGCTGGCGACACCTCTGATACCTGCCCATCTGAGCCGAGTGAG
AAAGAAGATGAGGCATCGGCTTGAGCCCTCGTAGCAACCGTTTTTGGGCA
GGTGGGCGTATCTATGAAAAGAGTCTTAAGCGAGTCCATGCGATGAAAAA
ATGTTGTTTGTTTGCTCTCATGCTTCCCCCCTCAGAGCACATTCCAGCTT
CCGGCTATGGGCGTCGAAAGAGCGCAGGACTTGTTCCCTACCTTGGGTTA
CGTGGAAGACCTCCTTGCGCCGGATCTCCGGTGGAATCCTGCGGGCAGTG
CCCACCCCAACCGGTGCGGCAGCCTCTGGGATGGTCCAGTTTACAAATCA
CCCGTACGAGGTTGTTGACTCTCTTCGTAGAAGTAGAGCTTATATTATGT
AGAAGTAAGTAAGTACCATACTATTAATATTATTAGTGTGTTTTGACCGA
AATTACTCAAATCCCCACAGCCTACGCCATCGATAGACAGACACCTGTAC
ACTCTGATGATGCTGTGGTTCTAAAACCATCCCTCCGATCCGCTGCAGCT
TCACGTGTACAGTAAGTATTACGGAGTAAGTGTAGAGTAACCGTTCCTAC
TCTCTCTCCACTTTGTAGTATAATAGAATGGAATGGAATGTAATGTTTCC
TCCAGCAGTATAATAGATAAATATACTATAAATGACCAAGTTTTTGTATA
GTTGGGGTTATGTTTACAAGTAGAGTTAGGGTTGGACCGGTTTCGCATTA
GCCATGGGGTCAACCATTGAATGTTCACTCTATAAAACATACTGGTAATT
AGTTTAGTTTGCACATCCTTCCCCACTAGTCTAACGGTATTACCAGTACT
TGTTAATAGTATTAGGACGGAGTAGTGAAGTAGTGAATAGAATAGAATAC
CGTATGTCAATGTCATGTCATATTATGTTAGGAACAAGATCGATCGCAAT
GCAAGACTTGATGATCAATACTGAATGCCGTCATTCCTCTAGCCTACCCC
TTCGTGCTTCCTTCCCTTTGCATCACATGCTCCTTCCTCTCTTCTCTACT
CTTCACTTCTCTACTCTTCTCTTCTCTTCTCTTCTCTTCTCTGTCTCGTT
GCTGGTGCCGAGAGCACAGGACGCGCCTGTGGGCGCTGAATAACGGCGGT
CACGGTGACTGCGTTTTCCACTCAGTGGCATGGGCGCTCTGGGGGCGTGA
CGACCCTGACGATGTGAGTGGAGACTGCGTCGACTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10534:3107..6843-

>mRNA_A-nodosum_M_contig10534.1.1 ID=mRNA_A-nodosum_M_contig10534.1.1|Name=mRNA_A-nodosum_M_contig10534.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig10534:3107..6843- (Ascophyllum nodosum dioecious)
ATGGGCGTCGAAAGAGCGCAGGACTTGTTCCCTACCTTGGGTTACGTGGA
AGACCTCCTTGCGCCGGATCTCCGGTGGAATCCTGCGGGCAGTGCCCACC
CCAACCGGACGCGCCTGTGGGCGCTGAATAACGGCGGTCACGGTGACTGC
GTTTTCCACTCAGTGGCATGGGCGCTCTGGGGGCGTGACGACCCTGACGA
TGTGAGTGGAGACTGCGTCGACTAA
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