mRNA_A-nodosum_M_contig1053.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1053.1.1
Unique NamemRNA_A-nodosum_M_contig1053.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: A0A4Y2Q2G9_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2Q2G9_ARAVE)

HSP 1 Score: 110 bits (274), Expect = 8.530e-28
Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKE 390
            M KFPYR+ +G LM+ ++ TRPDI  AV  ++ +C NPGL H +A L+ ++Y+  T +  I   +      + AYTDS++GAC+D R+S SG ++    V  SW + KQ+  A  T EAE++A+SE VKE
Sbjct:   33 MEKFPYRQLIGSLMFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAALQILKYVGSTSDLAIELSKANSNEFI-AYTDSNWGACIDDRKSTSGYIIFLGGVPFSWKTTKQKCVALSTMEAEFIAMSETVKE 161          
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: UPI00143DEBCB (secreted RxLR effector protein 161-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143DEBCB)

HSP 1 Score: 108 bits (269), Expect = 1.150e-26
Identity = 61/133 (45.86%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
            MS+ PYR   G LM+  T TRPDIA AV A++ F ENPG  H +A  + ++YL  T++  I     G  LI   ++D+D+GA +D RRS +G +   A  A+SW SRKQ   A  ++EAEY+ALSEA KE ++
Sbjct:   47 MSQIPYRNLTGSLMYLPTSTRPDIAYAVSALSQFNENPGEEHWKAAKRVLRYLKKTEKMEIVFSETGEKLI--GFSDADWGANIDDRRSYTGYLFKWAGGAISWSSRKQRTVAMSSAEAEYMALSEAAKETIY 177          
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: UPI001028384D (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Enterobacteriaceae TaxID=543 RepID=UPI001028384D)

HSP 1 Score: 111 bits (278), Expect = 3.100e-26
Identity = 66/133 (49.62%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
            M K PY  AVG LM+    TRPDIA AV  V+ +  NPG  H +AV   ++YL  TK  RI  G Q   L +K +TDSD+   LD RRS SG V   A  AVSW SR Q+     T+EAEYVA SEA KE ++
Sbjct:  265 MDKIPYASAVGSLMYAMIATRPDIAFAVGVVSRYMSNPGKKHWEAVKGILRYLKATKSMRICYGSQE--LSVKGFTDSDYAGDLDNRRSTSGYVFTLAGGAVSWRSRLQDCVTQSTTEAEYVAASEACKESIW 395          
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: A0A0J7JWE0_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7JWE0_LASNI)

HSP 1 Score: 106 bits (264), Expect = 4.280e-26
Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGV 396
            MSK PYR  +G LM+ +  TRPDIA AV A+  +  N GL H +A  + ++YL  TK  ++   +    L+   + D+D+GA +D RRS +G V   AN A+SW SRKQ+   + ++EAEYVALSEA KE V
Sbjct:   32 MSKIPYRSLIGSLMYLAISTRPDIAHAVMALGQYNSNYGLEHWRAAKRVLRYLQGTKHVKLVFKKTNKLLV--GFADADWGADVDHRRSYTGYVFQMANTAISWMSRKQKSVVTSSTEAEYVALSEAAKEAV 161          
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.390e-26
Identity = 62/133 (46.62%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    4 SKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGC-GLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
            ++FP+RE VG LMW +T TRPDIA AVRAVA +C +P L H  A +  + Y   T    I+  R    G  ++ Y D+DF +    RRSVSG +V     AVSW SR Q+     T+EAEYVAL + VKE +F
Sbjct:   95 TEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 227          
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: UPI001CF99591 (secreted RxLR effector protein 161-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF99591)

HSP 1 Score: 106 bits (265), Expect = 5.610e-26
Identity = 62/133 (46.62%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
            M + PY  AVG LM+    TRPDIA AV AV+ +  NPG  H   V   ++YL  TKE  +  G  G  L +K Y+DSDF + +D R+S S  + +    AVSW S KQ  TA  T+EAEY+A SEA KE V+
Sbjct:    1 MCEVPYASAVGSLMYAMLCTRPDIAFAVSAVSKYQSNPGERHWTTVKAILKYLRRTKE--LILGYGGSELTLKGYSDSDFQSDVDDRKSTSAFIFVCNGGAVSWKSAKQSTTADSTTEAEYIAASEAAKEAVW 131          
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: UPI001EEB589B (secreted RxLR effector protein 161-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEB589B)

HSP 1 Score: 105 bits (263), Expect = 1.020e-25
Identity = 63/133 (47.37%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
            M+K PYREAVG L++ S   RPDI+ AV  VA FC+NPG AH   V K + YL  T E  I   +     I   YTD+D+G  LD R S SG+V       VSW S++Q+  +  T+EAEYVA S+A KE V+
Sbjct:   69 MAKVPYREAVGCLLYISITCRPDISYAVSQVAKFCQNPGRAHWSGVKKILAYLSGTTELGIMFEKNETSPI-SGYTDADYGDDLDNRCSTSGSVFFVYGNLVSWSSKRQKCISQSTTEAEYVAASDACKEAVW 200          
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: UPI001EAF45B3 (secreted RxLR effector protein 161-like n=2 Tax=Osmia bicornis bicornis TaxID=1437191 RepID=UPI001EAF45B3)

HSP 1 Score: 105 bits (261), Expect = 1.120e-25
Identity = 57/133 (42.86%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
            M++ PYR  +G LM+ +T TRPDIA AV A++ F +NPG  H +A  + ++Y+  T++  I   +    LI   ++D+D+GA +D RRS +G V      A+SW SRKQ+  A  ++EAEY+ALSEA KE ++
Sbjct:   12 MNQVPYRSLIGSLMYLATSTRPDIAHAVSALSQFNDNPGEEHWKAAKRVLRYIKRTEKMEIVFTKTENELI--GFSDADWGASIDDRRSYTGYVFRLFGGAISWSSRKQKTVAMSSAEAEYMALSEAAKESIY 142          
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: A0A4Y2WQ03_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2WQ03_ARAVE)

HSP 1 Score: 110 bits (274), Expect = 1.910e-25
Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKE 390
            M KFPYR+ +G LM+ ++ TRPDI  AV  ++ +C NPGL H +A L+ ++Y+  T +  I   +      + AYTDS++GAC+D R+S SG ++    V  SW + KQ+  A  T EAE++A+SE VKE
Sbjct:  401 MEKFPYRQLIGSLMFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAALQILKYVGSTSDLAIELSKANSNEFI-AYTDSNWGACIDDRKSTSGYIIFLGGVPFSWKTTKQKCVALSTMEAEFIAMSETVKE 529          
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: A0A4Y2LHN7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LHN7_ARAVE)

HSP 1 Score: 110 bits (274), Expect = 2.190e-25
Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKE 390
            M KFPYR+ +G LM+ ++ TRPDI  AV  ++ +C NPGL H +A L+ ++Y+  T +  I   +      + AYTDS++GAC+D R+S SG ++    V  SW + KQ+  A  T EAE++A+SE VKE
Sbjct:  843 MEKFPYRQLIGSLMFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAALQILKYVGSTSDLAIELSKANSNEFI-AYTDSNWGACIDDRKSTSGYIIFLGGVPFSWKTTKQKCVALSTMEAEFIAMSETVKE 971          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y2Q2G9_ARAVE8.530e-2843.08Retrovirus-related Pol polyprotein from transposon... [more]
UPI00143DEBCB1.150e-2645.86secreted RxLR effector protein 161-like n=1 Tax=Be... [more]
UPI001028384D3.100e-2649.62Ty1/Copia family RNAse HI domain-containing protei... [more]
A0A0J7JWE0_LASNI4.280e-2645.45Retrovirus-related pol polyprotein from transposon... [more]
A0A6H5KRB4_9PHAE4.390e-2646.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001CF995915.610e-2646.62secreted RxLR effector protein 161-like n=1 Tax=Ma... [more]
UPI001EEB589B1.020e-2547.37secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
UPI001EAF45B31.120e-2542.86secreted RxLR effector protein 161-like n=2 Tax=Os... [more]
A0A4Y2WQ03_ARAVE1.910e-2543.08Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2LHN7_ARAVE2.190e-2543.08Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1053contigA-nodosum_M_contig1053:6537..6935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7425.NV18873-PA
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size399
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.74e-10
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size186
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866433.462909-UTR-A-nodosum_M_contig1053:6536..67491680866433.462909-UTR-A-nodosum_M_contig1053:6536..6749Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1053 6537..6749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866433.5498283-CDS-A-nodosum_M_contig1053:6749..69351680866433.5498283-CDS-A-nodosum_M_contig1053:6749..6935Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1053 6750..6935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1053.1.1prot_A-nodosum_M_contig1053.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1053 6750..6935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1053.1.1

>prot_A-nodosum_M_contig1053.1.1 ID=prot_A-nodosum_M_contig1053.1.1|Name=mRNA_A-nodosum_M_contig1053.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=62bp
MKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEY
VALSEAVKEGVF
back to top

mRNA from alignment at A-nodosum_M_contig1053:6537..6935+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1053.1.1 ID=mRNA_A-nodosum_M_contig1053.1.1|Name=mRNA_A-nodosum_M_contig1053.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:6537..6935+ (Ascophyllum nodosum dioecious)
ATGTCAAAATTCCCATACCGAGAGGCAGTAGGGGAACTCATGTGGACGTC AACGATGACACGGCCGGACATTGCGTGCGCGGTACGCGCTGTGGCCAGTT TCTGTGAAAACCCGGGACTGGCGCATAAACAAGCGGTGTTAAAGGGCATG CAATATCTTCTCCACACGAAGGAATGAAGGATCACATAGGGTAGGCAGGG CTGTGGACTCATCATGAAAGCGTACACGGACTCTGATTTTGGAGCTTGCC TGGATACTAGACGCTCGGTATCGGGTGCGGTGGTGATGCCAGCGAACGTG GCGGTCAGCTGGCACTCGAGAAAGCAAGAAGTGACTGCGTCGGGTACCTC AGAGGCAGAGTACGTTGCCTTGTCAGAGGCGGTAAAGGAGGGGGTTTTT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1053:6537..6935+

>mRNA_A-nodosum_M_contig1053.1.1 ID=mRNA_A-nodosum_M_contig1053.1.1|Name=mRNA_A-nodosum_M_contig1053.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=186bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:6537..6935+ (Ascophyllum nodosum dioecious)
ATGAAAGCGTACACGGACTCTGATTTTGGAGCTTGCCTGGATACTAGACG
CTCGGTATCGGGTGCGGTGGTGATGCCAGCGAACGTGGCGGTCAGCTGGC
ACTCGAGAAAGCAAGAAGTGACTGCGTCGGGTACCTCAGAGGCAGAGTAC
GTTGCCTTGTCAGAGGCGGTAAAGGAGGGGGTTTTT
back to top