mRNA_A-nodosum_M_contig1053.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: A0A4Y2Q2G9_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2Q2G9_ARAVE) HSP 1 Score: 110 bits (274), Expect = 8.530e-28 Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = 1
Query: 1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKE 390
M KFPYR+ +G LM+ ++ TRPDI AV ++ +C NPGL H +A L+ ++Y+ T + I + + AYTDS++GAC+D R+S SG ++ V SW + KQ+ A T EAE++A+SE VKE
Sbjct: 33 MEKFPYRQLIGSLMFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAALQILKYVGSTSDLAIELSKANSNEFI-AYTDSNWGACIDDRKSTSGYIIFLGGVPFSWKTTKQKCVALSTMEAEFIAMSETVKE 161
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: UPI00143DEBCB (secreted RxLR effector protein 161-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143DEBCB) HSP 1 Score: 108 bits (269), Expect = 1.150e-26 Identity = 61/133 (45.86%), Postives = 84/133 (63.16%), Query Frame = 1
Query: 1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
MS+ PYR G LM+ T TRPDIA AV A++ F ENPG H +A + ++YL T++ I G LI ++D+D+GA +D RRS +G + A A+SW SRKQ A ++EAEY+ALSEA KE ++
Sbjct: 47 MSQIPYRNLTGSLMYLPTSTRPDIAYAVSALSQFNENPGEEHWKAAKRVLRYLKKTEKMEIVFSETGEKLI--GFSDADWGANIDDRRSYTGYLFKWAGGAISWSSRKQRTVAMSSAEAEYMALSEAAKETIY 177
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: UPI001028384D (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Enterobacteriaceae TaxID=543 RepID=UPI001028384D) HSP 1 Score: 111 bits (278), Expect = 3.100e-26 Identity = 66/133 (49.62%), Postives = 79/133 (59.40%), Query Frame = 1
Query: 1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
M K PY AVG LM+ TRPDIA AV V+ + NPG H +AV ++YL TK RI G Q L +K +TDSD+ LD RRS SG V A AVSW SR Q+ T+EAEYVA SEA KE ++
Sbjct: 265 MDKIPYASAVGSLMYAMIATRPDIAFAVGVVSRYMSNPGKKHWEAVKGILRYLKATKSMRICYGSQE--LSVKGFTDSDYAGDLDNRRSTSGYVFTLAGGAVSWRSRLQDCVTQSTTEAEYVAASEACKESIW 395
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: A0A0J7JWE0_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7JWE0_LASNI) HSP 1 Score: 106 bits (264), Expect = 4.280e-26 Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = 1
Query: 1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGV 396
MSK PYR +G LM+ + TRPDIA AV A+ + N GL H +A + ++YL TK ++ + L+ + D+D+GA +D RRS +G V AN A+SW SRKQ+ + ++EAEYVALSEA KE V
Sbjct: 32 MSKIPYRSLIGSLMYLAISTRPDIAHAVMALGQYNSNYGLEHWRAAKRVLRYLQGTKHVKLVFKKTNKLLV--GFADADWGADVDHRRSYTGYVFQMANTAISWMSRKQKSVVTSSTEAEYVALSEAAKEAV 161
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE) HSP 1 Score: 108 bits (271), Expect = 4.390e-26 Identity = 62/133 (46.62%), Postives = 80/133 (60.15%), Query Frame = 1
Query: 4 SKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGC-GLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
++FP+RE VG LMW +T TRPDIA AVRAVA +C +P L H A + + Y T I+ R G ++ Y D+DF + RRSVSG +V AVSW SR Q+ T+EAEYVAL + VKE +F
Sbjct: 95 TEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 227
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: UPI001CF99591 (secreted RxLR effector protein 161-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF99591) HSP 1 Score: 106 bits (265), Expect = 5.610e-26 Identity = 62/133 (46.62%), Postives = 79/133 (59.40%), Query Frame = 1
Query: 1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
M + PY AVG LM+ TRPDIA AV AV+ + NPG H V ++YL TKE + G G L +K Y+DSDF + +D R+S S + + AVSW S KQ TA T+EAEY+A SEA KE V+
Sbjct: 1 MCEVPYASAVGSLMYAMLCTRPDIAFAVSAVSKYQSNPGERHWTTVKAILKYLRRTKE--LILGYGGSELTLKGYSDSDFQSDVDDRKSTSAFIFVCNGGAVSWKSAKQSTTADSTTEAEYIAASEAAKEAVW 131
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: UPI001EEB589B (secreted RxLR effector protein 161-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEB589B) HSP 1 Score: 105 bits (263), Expect = 1.020e-25 Identity = 63/133 (47.37%), Postives = 80/133 (60.15%), Query Frame = 1
Query: 1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
M+K PYREAVG L++ S RPDI+ AV VA FC+NPG AH V K + YL T E I + I YTD+D+G LD R S SG+V VSW S++Q+ + T+EAEYVA S+A KE V+
Sbjct: 69 MAKVPYREAVGCLLYISITCRPDISYAVSQVAKFCQNPGRAHWSGVKKILAYLSGTTELGIMFEKNETSPI-SGYTDADYGDDLDNRCSTSGSVFFVYGNLVSWSSKRQKCISQSTTEAEYVAASDACKEAVW 200
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: UPI001EAF45B3 (secreted RxLR effector protein 161-like n=2 Tax=Osmia bicornis bicornis TaxID=1437191 RepID=UPI001EAF45B3) HSP 1 Score: 105 bits (261), Expect = 1.120e-25 Identity = 57/133 (42.86%), Postives = 86/133 (64.66%), Query Frame = 1
Query: 1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKEGVF 399
M++ PYR +G LM+ +T TRPDIA AV A++ F +NPG H +A + ++Y+ T++ I + LI ++D+D+GA +D RRS +G V A+SW SRKQ+ A ++EAEY+ALSEA KE ++
Sbjct: 12 MNQVPYRSLIGSLMYLATSTRPDIAHAVSALSQFNDNPGEEHWKAAKRVLRYIKRTEKMEIVFTKTENELI--GFSDADWGASIDDRRSYTGYVFRLFGGAISWSSRKQKTVAMSSAEAEYMALSEAAKESIY 142
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: A0A4Y2WQ03_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2WQ03_ARAVE) HSP 1 Score: 110 bits (274), Expect = 1.910e-25 Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = 1
Query: 1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKE 390
M KFPYR+ +G LM+ ++ TRPDI AV ++ +C NPGL H +A L+ ++Y+ T + I + + AYTDS++GAC+D R+S SG ++ V SW + KQ+ A T EAE++A+SE VKE
Sbjct: 401 MEKFPYRQLIGSLMFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAALQILKYVGSTSDLAIELSKANSNEFI-AYTDSNWGACIDDRKSTSGYIIFLGGVPFSWKTTKQKCVALSTMEAEFIAMSETVKE 529
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Match: A0A4Y2LHN7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LHN7_ARAVE) HSP 1 Score: 110 bits (274), Expect = 2.190e-25 Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = 1
Query: 1 MSKFPYREAVGELMWTSTMTRPDIACAVRAVASFCENPGLAHKQAVLKGMQYLLHTKE*RIT*GRQGCGLIMKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYVALSEAVKE 390
M KFPYR+ +G LM+ ++ TRPDI AV ++ +C NPGL H +A L+ ++Y+ T + I + + AYTDS++GAC+D R+S SG ++ V SW + KQ+ A T EAE++A+SE VKE
Sbjct: 843 MEKFPYRQLIGSLMFLASRTRPDIQFAVTFLSQYCSNPGLNHWKAALQILKYVGSTSDLAIELSKANSNEFI-AYTDSNWGACIDDRKSTSGYIIFLGGVPFSWKTTKQKCVALSTMEAEFIAMSETVKE 971 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1053.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1053.1.1 >prot_A-nodosum_M_contig1053.1.1 ID=prot_A-nodosum_M_contig1053.1.1|Name=mRNA_A-nodosum_M_contig1053.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=62bp MKAYTDSDFGACLDTRRSVSGAVVMPANVAVSWHSRKQEVTASGTSEAEYback to top mRNA from alignment at A-nodosum_M_contig1053:6537..6935+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1053.1.1 ID=mRNA_A-nodosum_M_contig1053.1.1|Name=mRNA_A-nodosum_M_contig1053.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:6537..6935+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1053:6537..6935+ >mRNA_A-nodosum_M_contig1053.1.1 ID=mRNA_A-nodosum_M_contig1053.1.1|Name=mRNA_A-nodosum_M_contig1053.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=186bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:6537..6935+ (Ascophyllum nodosum dioecious)back to top |